Miyakogusa Predicted Gene

Lj5g3v0240220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0240220.1 CUFF.52777.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75850.1 | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-...   473   e-134
AT2G17790.1 | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:773...   426   e-120
AT3G51310.1 | Symbols: VPS35C | VPS35 homolog C | chr3:19044634-...   402   e-112

>AT1G75850.1 | Symbols: VPS35B | VPS35 homolog B |
           chr1:28478053-28483874 REVERSE LENGTH=790
          Length = 790

 Score =  473 bits (1216), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 218/262 (83%), Positives = 247/262 (94%), Gaps = 1/262 (0%)

Query: 5   GFEDEEKWLAEGIAGVQHNAFFLHRALDDNNLRDALKYAAMMLSELRTSRLSPHKYYELY 64
           G EDE+KWLAEGIAG+QHNAFF+HRALD NNLR+ LKY+A+MLSELRTS+LSP KYY+LY
Sbjct: 6   GVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYDLY 65

Query: 65  MRAFDELRRLEIFFKDETRHGVAIVDLYELVQHAGNILPRLYLLCTAGSVYLRCKDAPVK 124
           MRAFD+LR+LEIFFKDE+RHG+ +VDLYELVQHAGNILPR+YLLCT GSVY++ K AP K
Sbjct: 66  MRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAPSK 125

Query: 125 DVLKDLVEMCRSVQHPIRGLFLRSYLSQISRDKLPDIGSEYEGGDSNGVMDAVEFVLQNF 184
           DVLKDLVEMCR VQHPIRGLFLRSYL+Q+SRDKLP+IGS+YE GD+N VMDAVEFVLQNF
Sbjct: 126 DVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYE-GDANTVMDAVEFVLQNF 184

Query: 185 TEMNKLWVRLQHRGPGRIRDKKEKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVL 244
           TEMNKLWVR+QH+GPG +R+K+EKERNELRDLVGKNLHVL QIEGVDLEMYK+TVLP VL
Sbjct: 185 TEMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRVL 244

Query: 245 EQVVNCKDELAQFYLMECIIQV 266
           EQVVNCKD+LAQ+YLMECIIQV
Sbjct: 245 EQVVNCKDKLAQYYLMECIIQV 266


>AT2G17790.1 | Symbols: VPS35A, ZIP3 | VPS35 homolog A |
           chr2:7733685-7739344 FORWARD LENGTH=787
          Length = 787

 Score =  426 bits (1096), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/266 (76%), Positives = 244/266 (91%), Gaps = 1/266 (0%)

Query: 1   MIAEGFEDEEKWLAEGIAGVQHNAFFLHRALDDNNLRDALKYAAMMLSELRTSRLSPHKY 60
           MIA+G EDEEKWLA G A  + NAF++ RA+D NNL+DALKY+A MLSELRTS+LSPHKY
Sbjct: 1   MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRRLEIFFKDETRHGVAIVDLYELVQHAGNILPRLYLLCTAGSVYLRCKD 120
           Y+LYMRAFDELR+LEIFF +ETR G ++++LYELVQHAGNILPRLYLLCTAGSVY++ K+
Sbjct: 61  YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query: 121 APVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQISRDKLPDIGSEYEGGDSNGVMDAVEFV 180
           AP K++LKDLVEMCR +QHP+RGLFLRSYL+QISRDKLPDIGSEYE GD++ V+DAVEFV
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYE-GDADTVIDAVEFV 179

Query: 181 LQNFTEMNKLWVRLQHRGPGRIRDKKEKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVL 240
           L NFTEMNKLWVR+QH+GP R ++++EKER ELRDLVGKNLHVLSQ+EGVDL+MY+DTVL
Sbjct: 180 LLNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVL 239

Query: 241 PSVLEQVVNCKDELAQFYLMECIIQV 266
           P VLEQ+VNC+DE+AQ+YL++CIIQV
Sbjct: 240 PRVLEQIVNCRDEIAQYYLIDCIIQV 265


>AT3G51310.1 | Symbols: VPS35C | VPS35 homolog C |
           chr3:19044634-19049321 REVERSE LENGTH=790
          Length = 790

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/266 (73%), Positives = 232/266 (87%), Gaps = 4/266 (1%)

Query: 1   MIAEGFEDEEKWLAEGIAGVQHNAFFLHRALDDNNLRDALKYAAMMLSELRTSRLSPHKY 60
           MIA+   D+EKWLA  IA V+ NAF++ RA+D NNL+DALK++A MLSELRTS+LSPHKY
Sbjct: 1   MIAD---DDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKY 57

Query: 61  YELYMRAFDELRRLEIFFKDETRHGVAIVDLYELVQHAGNILPRLYLLCTAGSVYLRCKD 120
           YELYMR F+EL  LEIFFK+ET  G +I +LYELVQHAGNILPRLYLLCT GSVY++ KD
Sbjct: 58  YELYMRVFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKD 117

Query: 121 APVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQISRDKLPDIGSEYEGGDSNGVMDAVEFV 180
               D+LKDLVEMCR+VQHP+RGLFLRSYL+Q++RDKLP IGS+ E GD +  M+A+EFV
Sbjct: 118 VTATDILKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLE-GDGDAHMNALEFV 176

Query: 181 LQNFTEMNKLWVRLQHRGPGRIRDKKEKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVL 240
           LQNFTEMNKLWVR+QH+GP R ++K+EKERNELRDLVGKNLHVLSQ+EGVDL +Y+DTVL
Sbjct: 177 LQNFTEMNKLWVRMQHQGPSREKEKREKERNELRDLVGKNLHVLSQLEGVDLGIYRDTVL 236

Query: 241 PSVLEQVVNCKDELAQFYLMECIIQV 266
           P +LEQVVNCKDELAQ YLM+CIIQV
Sbjct: 237 PRILEQVVNCKDELAQCYLMDCIIQV 262