Miyakogusa Predicted Gene

Lj5g3v0238160.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0238160.2 Non Chatacterized Hit- tr|I1MY40|I1MY40_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,68.54,0,seg,NULL;
Conserved domain common to transcription factors TFIIS, elongin A,
CRSP70,Transcription fa,CUFF.52669.2
         (1074 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24200.1 | Symbols:  | Transcription elongation factor (TFIIS...   223   5e-58
AT3G48050.2 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    60   8e-09
AT3G48050.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    60   8e-09
AT3G48060.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    59   2e-08

>AT4G24200.1 | Symbols:  | Transcription elongation factor (TFIIS)
            family protein | chr4:12556927-12559929 REVERSE
            LENGTH=1000
          Length = 1000

 Score =  223 bits (568), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 231/466 (49%), Gaps = 44/466 (9%)

Query: 627  DLESSQVTEAARDPGGNSEKSLCTFDLNEEVGSDDVGVSSNAMSTTPIPIVSASRTAQTS 686
            D+E   +  AA+   G  EKS C FDLN+++  D+  V  ++ STTP P+  +   + ++
Sbjct: 561  DVEERHLATAAKSEVGR-EKSPCGFDLNQDICPDETDVIMSSTSTTPAPMSVSFSVSSSA 619

Query: 687  GLPTAPLKFDGTLQWKGSAATSAFRPASPHENTESEKNVSVGGNSDISKQRQDCLDIDLN 746
                AP   + +L  KGSAATS F  A PH+       V  G   D+ +++     IDLN
Sbjct: 620  MPAAAPWHLERSLSGKGSAATSVFHSALPHK-------VPSG---DLREKQVISRGIDLN 669

Query: 747  VAEGEEEFVKQIGESPGLP-------SGQSSVELSPKRSRRFELDLNSVGDDGDT-QPSD 798
            VAE  ++ V+ +      P        G+SS E S + S +F LDLN + +D +   PS+
Sbjct: 670  VAEVGDDQVEDLTPWKQFPFSSSNSRGGESSHEASLRGSSKFNLDLNCMNEDDEMPPPSE 729

Query: 799  QRMEGQLLSGRNGYWXXXXXXXXXXXXXXVR--NIDLNDKPLFQTDLVDKA-RPTKSSSN 855
             +ME +L    NG                 +  N DLND+P F  D  D+     +   +
Sbjct: 730  SKMETRLFLSHNGQQSASPVSSSSVAQQSGKEVNFDLNDRPQFFIDSRDQGPYYGRHPWS 789

Query: 856  VETYGLSKSDAPVISILGAKVEVGRKEFVPQIWSIPNGKANIEPAMDLTMSEAGGALGLT 915
              +YG  K + P ISILG KVE  RK+ VPQ+ S  +   ++EPA  L M   G +LGL 
Sbjct: 790  TASYGGHKLEEPGISILGTKVEADRKDSVPQMASFLSNGKSLEPATGLHMGRTGNSLGLA 849

Query: 916  PTVPYNNHSTVFGYNQLTXXXXXXXXXXKYGSGGTIPYMVDSRGAPI-VPQVGAGVGPSS 974
            P V ++  + ++GYN LT           Y  G  IPYMVDSRG P+ +PQ+   +G + 
Sbjct: 850  PGVSFSP-APMYGYNGLTGPPGLSMSSPMYVPGTAIPYMVDSRGTPVMMPQI---IGSAP 905

Query: 975  YTQPPF-----IMSMTGTQLGLNGVGPSRPNFDLNSGLLIDGGNRDALATRPFFFPAQGR 1029
            Y QPPF      MS+ G     N  G  RPNFD NSG  ++ GNR++L  R F  P+Q  
Sbjct: 906  YVQPPFPQQHMFMSLAGGSPSTN--GSMRPNFDQNSGFGLEIGNRESLNLRQFLSPSQSG 963

Query: 1030 AM-EEQHVRTLPQXXXXXGVGGKRKEPDSSWETYPFSYKHQQPPWK 1074
            AM E       P       +GGKRKEP+  WE          PPW+
Sbjct: 964  AMGEHSGANVEPSSSSSISIGGKRKEPEPRWEF---------PPWR 1000



 Score =  189 bits (480), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 114/147 (77%)

Query: 1   MTLEDFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENK 60
           MTLEDFFTLTE+KDGLT  SRVEEL+S MQ  +DSV+KN+GDA RQW +VASTIAAT+N+
Sbjct: 1   MTLEDFFTLTEIKDGLTVTSRVEELVSVMQSNKDSVLKNSGDAFRQWTAVASTIAATKNR 60

Query: 61  DCLDLFIQLDGLRFINRWLNDAQNVGFSANDGTIEESTTAMLRAVEKLYIDREKSISSGI 120
           DCLD+F+ LDGL +++ WL +AQ +   + D ++EES  A+L AVE L +D  K +SSG+
Sbjct: 61  DCLDVFVNLDGLVYLSSWLAEAQMLDNDSVDRSVEESILALLEAVENLGVDSSKLVSSGL 120

Query: 121 WATVSNLLGHQSSKVQDRARVLYDNWK 147
           W  V  L+ H SS+VQD+AR L+ +WK
Sbjct: 121 WVAVKKLVDHGSSRVQDQARKLFGSWK 147


>AT3G48050.2 | Symbols:  | BAH domain ;TFIIS helical bundle-like
           domain | chr3:17734270-17739412 REVERSE LENGTH=1613
          Length = 1613

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 5   DFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENKDCLD 64
           +    TE K GL     VE+L+  M  E++   K      R  A +A  +AAT+  DCL 
Sbjct: 263 EILKFTE-KGGLVDSEGVEKLVQLMLPERNE--KKIDLVGR--AILAGVVAATDKFDCLS 317

Query: 65  LFIQLDGLRFINRWLNDAQNVGFSANDGTIEES-------TTAMLRAVEKLYIDREKSIS 117
            F+QL GL   + WL +    G   + G+ ++S          +LRA++KL ++     +
Sbjct: 318 RFVQLRGLPVFDEWLQEVHK-GKVGDGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQT 376

Query: 118 SGIWATVSNLLGHQSSKVQDRARVLYDNWK 147
             I  +V++L  H++S++  +AR L D WK
Sbjct: 377 CNIGKSVNHLRSHKNSEIGKKARSLVDTWK 406


>AT3G48050.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like
           domain | chr3:17734270-17739412 REVERSE LENGTH=1613
          Length = 1613

 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 5   DFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENKDCLD 64
           +    TE K GL     VE+L+  M  E++   K      R  A +A  +AAT+  DCL 
Sbjct: 263 EILKFTE-KGGLVDSEGVEKLVQLMLPERNE--KKIDLVGR--AILAGVVAATDKFDCLS 317

Query: 65  LFIQLDGLRFINRWLNDAQNVGFSANDGTIEES-------TTAMLRAVEKLYIDREKSIS 117
            F+QL GL   + WL +    G   + G+ ++S          +LRA++KL ++     +
Sbjct: 318 RFVQLRGLPVFDEWLQEVHK-GKVGDGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQT 376

Query: 118 SGIWATVSNLLGHQSSKVQDRARVLYDNWK 147
             I  +V++L  H++S++  +AR L D WK
Sbjct: 377 CNIGKSVNHLRSHKNSEIGKKARSLVDTWK 406


>AT3G48060.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like
           domain | chr3:17743234-17748372 REVERSE LENGTH=1611
          Length = 1611

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 5   DFFTLTEMKDGLTAPSRVEELISAMQREQDSVVKNAGDATRQWASVASTIAATENKDCLD 64
           +    TE K GL     VE+L+  M  E++   K      R  A +A  +AAT   DCL 
Sbjct: 263 EILKFTE-KGGLVDSEGVEKLVQLMLPERNE--KKIDLVGR--AILAGFVAATNRFDCLS 317

Query: 65  LFIQLDGLRFINRWLNDAQNVGFSANDGTIEES-------TTAMLRAVEKLYIDREKSIS 117
            F+QL GL   + WL +    G   + G+ ++S          +LRA++KL ++     +
Sbjct: 318 RFVQLRGLPVFDEWLQEVHK-GKVGDGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQT 376

Query: 118 SGIWATVSNLLGHQSSKVQDRARVLYDNWK 147
             I  +V++L  H++S++  +AR L D WK
Sbjct: 377 CNIGKSVNHLRSHKNSEIGKKARSLVDTWK 406



 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 30/127 (23%)

Query: 651  FDLNEEVGSDDV--GVSSN-------------AMSTTPIPIVSASR-------TAQTSGL 688
            FDLNE    DD   G S+N              ++T P P+   S         A     
Sbjct: 1135 FDLNEGFDGDDAQHGDSNNFSGSVVLTPTPLQPVNTLPFPVAPVSSGIPASITVAAAVKG 1194

Query: 689  PTAP----LKFDGTLQWKGSAATSAFRPASPHENTESEKNVSVGGNSDIS----KQRQDC 740
            P  P    L++ G + W+GSAATSAFRPA P +  +   +++    SD S    KQ +  
Sbjct: 1195 PFVPPEDLLRYKGAVGWRGSAATSAFRPAEPRKAQDVLLSINNTSTSDASTSAGKQTRTF 1254

Query: 741  LDIDLNV 747
            LD DLNV
Sbjct: 1255 LDFDLNV 1261