Miyakogusa Predicted Gene

Lj5g3v0238160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0238160.1 Non Chatacterized Hit- tr|I1MY40|I1MY40_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,65.4,0,seg,NULL;
Conserved domain common to transcription factors TFIIS, elongin A,
CRSP70,Transcription fa,CUFF.52669.1
         (998 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24200.1 | Symbols:  | Transcription elongation factor (TFIIS...   185   2e-46
AT3G48050.2 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    59   2e-08
AT3G48050.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    59   2e-08
AT3G48060.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    55   2e-07

>AT4G24200.1 | Symbols:  | Transcription elongation factor (TFIIS)
           family protein | chr4:12556927-12559929 REVERSE
           LENGTH=1000
          Length = 1000

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/162 (54%), Positives = 119/162 (73%)

Query: 1   MTLEDFFTLTEMKDGLTASSRVQELITVMKKEQDCVVKNAGDAIRQWAAVASTIAATQNK 60
           MTLEDFFTLTE+KDGLT +SRV+EL++VM+  +D V+KN+GDA RQW AVASTIAAT+N+
Sbjct: 1   MTLEDFFTLTEIKDGLTVTSRVEELVSVMQSNKDSVLKNSGDAFRQWTAVASTIAATKNR 60

Query: 61  DCLDLFIRLDGVWYINRWLNDAQNFVVDEHEGLLEESITAMLRAVEKLYQDCEMSISSEI 120
           DCLD+F+ LDG+ Y++ WL +AQ    D  +  +EESI A+L AVE L  D    +SS +
Sbjct: 61  DCLDVFVNLDGLVYLSSWLAEAQMLDNDSVDRSVEESILALLEAVENLGVDSSKLVSSGL 120

Query: 121 RVTVSNLLGHQSSKVQDRARVLFSNWKEGGNGDTESHETDIC 162
            V V  L+ H SS+VQD+AR LF +WK+  + D   H+++ C
Sbjct: 121 WVAVKKLVDHGSSRVQDQARKLFGSWKDKDDYDHSEHDSESC 162


>AT3G48050.2 | Symbols:  | BAH domain ;TFIIS helical bundle-like
            domain | chr3:17734270-17739412 REVERSE LENGTH=1613
          Length = 1613

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 163/463 (35%), Gaps = 108/463 (23%)

Query: 597  TTAPISVVSASKPAQTSGLLTAP---LQFEGTLGGWKGSAATSAFRPASPRKKSD---SE 650
            T A I+V +A+K     G    P   L+ +G +G W+GSAATSAFRPA PRK  D   S 
Sbjct: 1180 TRASITVAAAAK-----GPFVPPEDLLRNKGAVG-WRGSAATSAFRPAEPRKPQDVLLSI 1233

Query: 651  KNVSVG-GGTDISKQRQVCLDIDLNVAEGE--EGLVKQ------------IGQFPDLPSG 695
             N S     T   KQ +  LD DLNV +    E L  Q               F  + SG
Sbjct: 1234 NNTSTSDASTSAGKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSDITNSFDQVRSG 1293

Query: 696  QSSEELSPKRPGRFELDLNSVGDDGD----TQPSNHRMEGKL----FPVRNGYWXXXXXX 747
                 L     G  +LDLN V D  D    T  S+HR++        P   G        
Sbjct: 1294 VMGSALD-HSSGGLDLDLNKVDDSTDMISYTMNSSHRLDSSFQQVKLPSTGGR------- 1345

Query: 748  XXXXMQPYVRNIDLNDRPFFQTDLVDQGPAKSSPNIEAYGHPKSA--PMISILGAKVEVA 805
                     R+ DLND P      V+       P++    H +S      S+ G +V   
Sbjct: 1346 ---------RDFDLNDGPVGDDAAVE-------PSMVLNQHSRSGLPSQPSLSGIRVNGE 1389

Query: 806  RREYVPQNWSLPNG------------KAIEPAIDLTMSGSSQFLG-------------LG 840
                    +   N             +  +P   +   G  + LG              G
Sbjct: 1390 NMASFSTWFPAANAYSAVSMPPIMPERGDQPFPMIATRGPQRMLGPTTGVSSFTPEGYRG 1449

Query: 841  PVVSDN-----HSTVFGYNQXXXXXXXXXXXXAMYGSGGTIPYMVDSRGAPAVP----QV 891
            PV+S +      ST F Y              A +    T      S G    P    Q+
Sbjct: 1450 PVLSSSPAMPFQSTTFQY-PVFPFGNSFPVTSANFPGASTAHMDSSSSGRACFPGVNSQI 1508

Query: 892  GGSTVLSSYNQP-PFIMSMT--GTQLGL--NGVGSSHPHFDLNS---GFLVDGGNRDALA 943
             G  V    N P P+I+ +   G+  G+  NG        DLNS   G   +G +   L 
Sbjct: 1509 LGPGVPVPSNYPRPYIVGLPNGGSNGGVLDNGAKWFRSGLDLNSGPGGHETEGRDESTLV 1568

Query: 944  GRPFFFPAQGRAMEEHVRSFPQXXXXXXXXGKRKEPDGGWETY 986
             R     A     E+  R +           KRKEP+GGW+ Y
Sbjct: 1569 ARQLSSSASLPLKEDQARMYQMSGGVL----KRKEPEGGWDGY 1607



 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 5   DFFTLTEMKDGLTASSRVQELITVMKKEQD-CVVKNAGDAIRQWAAVASTIAATQNKDCL 63
           +    TE K GL  S  V++L+ +M  E++   +   G AI     +A  +AAT   DCL
Sbjct: 263 EILKFTE-KGGLVDSEGVEKLVQLMLPERNEKKIDLVGRAI-----LAGVVAATDKFDCL 316

Query: 64  DLFIRLDGVWYINRWLNDAQNFVV------DEHEGLLEESITAMLRAVEKLYQDCEMSIS 117
             F++L G+   + WL +     V       + + L+++ +  +LRA++KL  +     +
Sbjct: 317 SRFVQLRGLPVFDEWLQEVHKGKVGDGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQT 376

Query: 118 SEIRVTVSNLLGHQSSKVQDRARVLFSNWKE 148
             I  +V++L  H++S++  +AR L   WK+
Sbjct: 377 CNIGKSVNHLRSHKNSEIGKKARSLVDTWKK 407


>AT3G48050.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like
            domain | chr3:17734270-17739412 REVERSE LENGTH=1613
          Length = 1613

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 163/463 (35%), Gaps = 108/463 (23%)

Query: 597  TTAPISVVSASKPAQTSGLLTAP---LQFEGTLGGWKGSAATSAFRPASPRKKSD---SE 650
            T A I+V +A+K     G    P   L+ +G +G W+GSAATSAFRPA PRK  D   S 
Sbjct: 1180 TRASITVAAAAK-----GPFVPPEDLLRNKGAVG-WRGSAATSAFRPAEPRKPQDVLLSI 1233

Query: 651  KNVSVG-GGTDISKQRQVCLDIDLNVAEGE--EGLVKQ------------IGQFPDLPSG 695
             N S     T   KQ +  LD DLNV +    E L  Q               F  + SG
Sbjct: 1234 NNTSTSDASTSAGKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSDITNSFDQVRSG 1293

Query: 696  QSSEELSPKRPGRFELDLNSVGDDGD----TQPSNHRMEGKL----FPVRNGYWXXXXXX 747
                 L     G  +LDLN V D  D    T  S+HR++        P   G        
Sbjct: 1294 VMGSALD-HSSGGLDLDLNKVDDSTDMISYTMNSSHRLDSSFQQVKLPSTGGR------- 1345

Query: 748  XXXXMQPYVRNIDLNDRPFFQTDLVDQGPAKSSPNIEAYGHPKSA--PMISILGAKVEVA 805
                     R+ DLND P      V+       P++    H +S      S+ G +V   
Sbjct: 1346 ---------RDFDLNDGPVGDDAAVE-------PSMVLNQHSRSGLPSQPSLSGIRVNGE 1389

Query: 806  RREYVPQNWSLPNG------------KAIEPAIDLTMSGSSQFLG-------------LG 840
                    +   N             +  +P   +   G  + LG              G
Sbjct: 1390 NMASFSTWFPAANAYSAVSMPPIMPERGDQPFPMIATRGPQRMLGPTTGVSSFTPEGYRG 1449

Query: 841  PVVSDN-----HSTVFGYNQXXXXXXXXXXXXAMYGSGGTIPYMVDSRGAPAVP----QV 891
            PV+S +      ST F Y              A +    T      S G    P    Q+
Sbjct: 1450 PVLSSSPAMPFQSTTFQY-PVFPFGNSFPVTSANFPGASTAHMDSSSSGRACFPGVNSQI 1508

Query: 892  GGSTVLSSYNQP-PFIMSMT--GTQLGL--NGVGSSHPHFDLNS---GFLVDGGNRDALA 943
             G  V    N P P+I+ +   G+  G+  NG        DLNS   G   +G +   L 
Sbjct: 1509 LGPGVPVPSNYPRPYIVGLPNGGSNGGVLDNGAKWFRSGLDLNSGPGGHETEGRDESTLV 1568

Query: 944  GRPFFFPAQGRAMEEHVRSFPQXXXXXXXXGKRKEPDGGWETY 986
             R     A     E+  R +           KRKEP+GGW+ Y
Sbjct: 1569 ARQLSSSASLPLKEDQARMYQMSGGVL----KRKEPEGGWDGY 1607



 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 5   DFFTLTEMKDGLTASSRVQELITVMKKEQD-CVVKNAGDAIRQWAAVASTIAATQNKDCL 63
           +    TE K GL  S  V++L+ +M  E++   +   G AI     +A  +AAT   DCL
Sbjct: 263 EILKFTE-KGGLVDSEGVEKLVQLMLPERNEKKIDLVGRAI-----LAGVVAATDKFDCL 316

Query: 64  DLFIRLDGVWYINRWLNDAQNFVV------DEHEGLLEESITAMLRAVEKLYQDCEMSIS 117
             F++L G+   + WL +     V       + + L+++ +  +LRA++KL  +     +
Sbjct: 317 SRFVQLRGLPVFDEWLQEVHKGKVGDGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQT 376

Query: 118 SEIRVTVSNLLGHQSSKVQDRARVLFSNWKE 148
             I  +V++L  H++S++  +AR L   WK+
Sbjct: 377 CNIGKSVNHLRSHKNSEIGKKARSLVDTWKK 407


>AT3G48060.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like
            domain | chr3:17743234-17748372 REVERSE LENGTH=1611
          Length = 1611

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 81/202 (40%), Gaps = 55/202 (27%)

Query: 600  PISVVSASKPAQTS------GLLTAP---LQFEGTLGGWKGSAATSAFRPASPRKKSD-- 648
            P++ VS+  PA  +      G    P   L+++G +G W+GSAATSAFRPA PRK  D  
Sbjct: 1174 PVAPVSSGIPASITVAAAVKGPFVPPEDLLRYKGAVG-WRGSAATSAFRPAEPRKAQDVL 1232

Query: 649  -SEKNVSVG-GGTDISKQRQVCLDIDLNVAEGE--EGLVKQ------------IGQFPDL 692
             S  N S     T   KQ +  LD DLNV +    E L  Q               F  +
Sbjct: 1233 LSINNTSTSDASTSAGKQTRTFLDFDLNVPDERVLEDLASQRSGNPTNCTSGITNNFDQV 1292

Query: 693  PSGQSSEELSPKRPGRFELDLNSVGDDGD----TQPSNHRMEGKL----FPVRNGYWXXX 744
             SG     L     G   LDLN V D  D    T  S+HR++        P   G     
Sbjct: 1293 RSGVMGSALDHSSGG---LDLNKVDDLTDMNSYTMNSSHRLDSSFQQVKLPSTGGR---- 1345

Query: 745  XXXXXXXMQPYVRNIDLNDRPF 766
                        R+ DLND P 
Sbjct: 1346 ------------RDFDLNDGPV 1355



 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 13/151 (8%)

Query: 5   DFFTLTEMKDGLTASSRVQELITVMKKEQD-CVVKNAGDAIRQWAAVASTIAATQNKDCL 63
           +    TE K GL  S  V++L+ +M  E++   +   G AI     +A  +AAT   DCL
Sbjct: 263 EILKFTE-KGGLVDSEGVEKLVQLMLPERNEKKIDLVGRAI-----LAGFVAATNRFDCL 316

Query: 64  DLFIRLDGVWYINRWLNDAQNFVV------DEHEGLLEESITAMLRAVEKLYQDCEMSIS 117
             F++L G+   + WL +     V       + + L+++ +  +LRA++KL  +     +
Sbjct: 317 SRFVQLRGLPVFDEWLQEVHKGKVGDGGSPKDSDRLVDDFLLVLLRALDKLPVNLNALQT 376

Query: 118 SEIRVTVSNLLGHQSSKVQDRARVLFSNWKE 148
             I  +V++L  H++S++  +AR L   WK+
Sbjct: 377 CNIGKSVNHLRSHKNSEIGKKARSLVDTWKK 407