Miyakogusa Predicted Gene
- Lj5g3v0218110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0218110.1 Non Chatacterized Hit- tr|Q5JL26|Q5JL26_ORYSJ
Putative uncharacterized protein P0682B08.32 OS=Oryza ,40.12,9e-18,no
description,Tetratricopeptide-like helical; PCDC2 (PROGRAMMED CELL
DEATH PROTEIN
2)-RELATED,NULL;,NODE_41648_length_980_cov_119.596939.path2.1
(246 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67340.1 | Symbols: | HCP-like superfamily protein with MYND... 317 3e-87
AT5G50450.1 | Symbols: | HCP-like superfamily protein with MYND... 263 7e-71
>AT1G67340.1 | Symbols: | HCP-like superfamily protein with
MYND-type zinc finger | chr1:25230323-25231622 FORWARD
LENGTH=379
Length = 379
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 164/236 (69%), Positives = 181/236 (76%), Gaps = 18/236 (7%)
Query: 1 MIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAA 60
MIRFYCLQNRG+GASLMAKAAISSHA ALYSLAVIQFNGSGG+K+DKDLRAGVALCARAA
Sbjct: 129 MIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA 188
Query: 61 FLGHIDALREIGHCLQDGYGCRKNIIEGRRFLIEANARELAAVMXXXXXXXXXXXXXXXX 120
FLGH+DALRE+GHCLQDGYG +N+ EGRRFL++ANARELAAV+
Sbjct: 189 FLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQANARELAAVL----------SSGIQA 238
Query: 121 XXTWSLHPQ------QRHLPSGAPLLSDFGWNVPEPEPHPANRFMTEWFAAK-DDVPGPG 173
TW Q H PLLSDFG NVP PE HPANRF+ +WFA + D PG G
Sbjct: 239 RSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDG 298
Query: 174 LSLCSHMGCGRPETRNREFRRCSVCGTVNYCSRACQALDWKLRHKVECAAPMERLL 229
L LCSH GCGRPETR EFRRCSVCG VNYCSRACQALDWKLRHK++C AP++R L
Sbjct: 299 LRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDC-APVQRWL 353
>AT5G50450.1 | Symbols: | HCP-like superfamily protein with
MYND-type zinc finger | chr5:20543519-20544698 REVERSE
LENGTH=336
Length = 336
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 159/228 (69%), Gaps = 27/228 (11%)
Query: 1 MIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAA 60
MIRFYCLQN SGASLMAKAAI SHA ALYSL+VIQFNGSGG+K+DK+LRAGVALCAR+A
Sbjct: 107 MIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSA 166
Query: 61 FLGHIDALREIGHCLQDGYGCRKNIIEGRRFLIEANARELAAVMXXXXXXXXXXXXXXXX 120
+LGH+DALRE+GHCLQDGYG +++ EGRR LI+ANARELA +
Sbjct: 167 YLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQANARELACSLRSYLS----------- 215
Query: 121 XXTWSLHPQQRHLPSGA--PLLSDFGWNVPEPEPHPANRFMTEWFAAKDDVPGPGLSLCS 178
L SG L+D VP E HP NRF+ EWF++ GL +CS
Sbjct: 216 ------------LKSGDENETLTDLSV-VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCS 262
Query: 179 HMGCGRPETRNREFRRCSVCGTVNYCSRACQALDWKLRHKVECAAPME 226
H GCGRPETR EFRRCSVCG VNYCSR CQALDW+ +HKVEC P++
Sbjct: 263 HGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHKVEC-TPLD 309