Miyakogusa Predicted Gene

Lj5g3v0218110.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0218110.1 Non Chatacterized Hit- tr|Q5JL26|Q5JL26_ORYSJ
Putative uncharacterized protein P0682B08.32 OS=Oryza ,40.12,9e-18,no
description,Tetratricopeptide-like helical; PCDC2 (PROGRAMMED CELL
DEATH PROTEIN
2)-RELATED,NULL;,NODE_41648_length_980_cov_119.596939.path2.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67340.1 | Symbols:  | HCP-like superfamily protein with MYND...   317   3e-87
AT5G50450.1 | Symbols:  | HCP-like superfamily protein with MYND...   263   7e-71

>AT1G67340.1 | Symbols:  | HCP-like superfamily protein with
           MYND-type zinc finger | chr1:25230323-25231622 FORWARD
           LENGTH=379
          Length = 379

 Score =  317 bits (813), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/236 (69%), Positives = 181/236 (76%), Gaps = 18/236 (7%)

Query: 1   MIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAA 60
           MIRFYCLQNRG+GASLMAKAAISSHA ALYSLAVIQFNGSGG+K+DKDLRAGVALCARAA
Sbjct: 129 MIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAA 188

Query: 61  FLGHIDALREIGHCLQDGYGCRKNIIEGRRFLIEANARELAAVMXXXXXXXXXXXXXXXX 120
           FLGH+DALRE+GHCLQDGYG  +N+ EGRRFL++ANARELAAV+                
Sbjct: 189 FLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQANARELAAVL----------SSGIQA 238

Query: 121 XXTWSLHPQ------QRHLPSGAPLLSDFGWNVPEPEPHPANRFMTEWFAAK-DDVPGPG 173
             TW    Q        H     PLLSDFG NVP PE HPANRF+ +WFA +  D PG G
Sbjct: 239 RSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDG 298

Query: 174 LSLCSHMGCGRPETRNREFRRCSVCGTVNYCSRACQALDWKLRHKVECAAPMERLL 229
           L LCSH GCGRPETR  EFRRCSVCG VNYCSRACQALDWKLRHK++C AP++R L
Sbjct: 299 LRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDC-APVQRWL 353


>AT5G50450.1 | Symbols:  | HCP-like superfamily protein with
           MYND-type zinc finger | chr5:20543519-20544698 REVERSE
           LENGTH=336
          Length = 336

 Score =  263 bits (673), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 137/228 (60%), Positives = 159/228 (69%), Gaps = 27/228 (11%)

Query: 1   MIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAA 60
           MIRFYCLQN  SGASLMAKAAI SHA ALYSL+VIQFNGSGG+K+DK+LRAGVALCAR+A
Sbjct: 107 MIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVIQFNGSGGSKTDKNLRAGVALCARSA 166

Query: 61  FLGHIDALREIGHCLQDGYGCRKNIIEGRRFLIEANARELAAVMXXXXXXXXXXXXXXXX 120
           +LGH+DALRE+GHCLQDGYG  +++ EGRR LI+ANARELA  +                
Sbjct: 167 YLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQANARELACSLRSYLS----------- 215

Query: 121 XXTWSLHPQQRHLPSGA--PLLSDFGWNVPEPEPHPANRFMTEWFAAKDDVPGPGLSLCS 178
                       L SG     L+D    VP  E HP NRF+ EWF++       GL +CS
Sbjct: 216 ------------LKSGDENETLTDLSV-VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCS 262

Query: 179 HMGCGRPETRNREFRRCSVCGTVNYCSRACQALDWKLRHKVECAAPME 226
           H GCGRPETR  EFRRCSVCG VNYCSR CQALDW+ +HKVEC  P++
Sbjct: 263 HGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHKVEC-TPLD 309