Miyakogusa Predicted Gene

Lj5g3v0186710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0186710.1 Non Chatacterized Hit- tr|I3SGY5|I3SGY5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,SNARE-like,Longin-like domain; CLATHRIN COAT ASSEMBLY
PROTEIN AP17,NULL; CLATHRIN COAT ASSEMBLY PROT,CUFF.52634.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47830.1 | Symbols:  | SNARE-like superfamily protein | chr1:...   264   2e-71
AT4G35410.2 | Symbols:  | Clathrin adaptor complex small chain f...   166   5e-42
AT2G17380.1 | Symbols: AP19 | associated protein 19 | chr2:75531...   165   7e-42
AT4G35410.1 | Symbols:  | Clathrin adaptor complex small chain f...   135   9e-33
AT2G19790.1 | Symbols:  | SNARE-like superfamily protein | chr2:...   128   1e-30
AT3G50860.1 | Symbols:  | Clathrin adaptor complex small chain f...   108   2e-24

>AT1G47830.1 | Symbols:  | SNARE-like superfamily protein |
           chr1:17613346-17614784 REVERSE LENGTH=142
          Length = 142

 Score =  264 bits (674), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/136 (94%), Positives = 133/136 (97%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRD K+TNFVEFRTHK+IYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMG 136
           GELQETSK+AIIERM 
Sbjct: 121 GELQETSKRAIIERMS 136


>AT4G35410.2 | Symbols:  | Clathrin adaptor complex small chain
           family protein | chr4:16832572-16833796 FORWARD
           LENGTH=162
          Length = 162

 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 99/131 (75%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           MI F+LL +RQGK RL K+Y P    E+ KV  E+  +++NR PK  NFVE+R +K++Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQETSKKAI 131
           GELQE+SKK +
Sbjct: 121 GELQESSKKTV 131


>AT2G17380.1 | Symbols: AP19 | associated protein 19 |
           chr2:7553122-7554887 FORWARD LENGTH=161
          Length = 161

 Score =  165 bits (418), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 99/131 (75%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           MI F+LL +RQGK RL K+Y P    E+ KV  E+  +++NR PK  NF+E+R +K++Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQETSKKAI 131
           GELQE+SKK +
Sbjct: 121 GELQESSKKTV 131


>AT4G35410.1 | Symbols:  | Clathrin adaptor complex small chain
           family protein | chr4:16832572-16833476 FORWARD
           LENGTH=124
          Length = 124

 Score =  135 bits (340), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 82/110 (74%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           MI F+LL +RQGK RL K+Y P    E+ KV  E+  +++NR PK  NFVE+R +K++Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 110
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHKV
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKV 110


>AT2G19790.1 | Symbols:  | SNARE-like superfamily protein |
           chr2:8527302-8528395 FORWARD LENGTH=143
          Length = 143

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 91/131 (69%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRR 61
           IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +KI+YRR
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 122 ELQETSKKAII 132
            + ETSK  I+
Sbjct: 123 CIVETSKANIL 133


>AT3G50860.1 | Symbols:  | Clathrin adaptor complex small chain
           family protein | chr3:18902346-18903959 FORWARD
           LENGTH=166
          Length = 166

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 88/138 (63%), Gaps = 5/138 (3%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRT-----H 55
           MI+ +++ N QGK RLAK+Y  L   ++ ++   V  ++ +R    +NF+E  +      
Sbjct: 1   MIKAVMMMNTQGKPRLAKFYDYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPDS 60

Query: 56  KIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILD 115
           +++Y+ YA L+F L  D ++NELA L+ I + VE LD  FSNVCELD+VFN+ K++ +LD
Sbjct: 61  RLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVFNYSKMHAVLD 120

Query: 116 EFILAGELQETSKKAIIE 133
           E +  G++ ETS   +++
Sbjct: 121 EIVFGGQVLETSSAEVMK 138