Miyakogusa Predicted Gene

Lj5g3v0175610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0175610.1 tr|A7S166|A7S166_NEMVE Predicted protein
(Fragment) OS=Nematostella vectensis GN=v1g100491 PE=4
SV=1,35.71,0.00006,DnaJ/Hsp40 cysteine-rich domain,Heat shock protein
DnaJ, cysteine-rich domain; seg,NULL; no descript,CUFF.52621.1
         (156 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75690.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain superf...   219   5e-58

>AT1G75690.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain
           superfamily protein | chr1:28422273-28423170 REVERSE
           LENGTH=154
          Length = 154

 Score =  219 bits (558), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 123/139 (88%), Gaps = 3/139 (2%)

Query: 19  CPLK-QPFSPSSRNRIQPKPTSYPRIRALEFDQNTVIAITVGVASVAIGIGIPVFYESQI 77
           CP+   P S S+RN   P  TSYPRI+A E D NTV+AI+VGVASVA+GIGIPVFYE+QI
Sbjct: 18  CPINFTPSSFSARNLRSPS-TSYPRIKA-ELDPNTVVAISVGVASVALGIGIPVFYETQI 75

Query: 78  DNAAKRDNTQPCFPCSGSGAQKCRFCLGTGNVTVELGGDEKEVSRCINCDGAGSLTCTTC 137
           DNAAKR+NTQPCFPC+G+GAQKCR C+G+GNVTVELGG EKEVS CINCDGAGSLTCTTC
Sbjct: 76  DNAAKRENTQPCFPCNGTGAQKCRLCVGSGNVTVELGGGEKEVSNCINCDGAGSLTCTTC 135

Query: 138 QGSGIQPRYLDRREFKDDD 156
           QGSG+QPRYLDRREFKDDD
Sbjct: 136 QGSGVQPRYLDRREFKDDD 154