Miyakogusa Predicted Gene

Lj5g3v0122140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0122140.1 Non Chatacterized Hit- tr|I3S398|I3S398_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.77,0,SUBFAMILY
NOT NAMED,NULL; 60S RIBOSOMAL PROTEIN L14,NULL;
Ribosomal_L14e,Ribosomal protein L14; no
d,NODE_22634_length_378_cov_1010.415344.path1.1
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20450.1 | Symbols:  | Ribosomal protein L14 | chr2:8813923-8...   215   6e-57
AT4G27090.1 | Symbols:  | Ribosomal protein L14 | chr4:13594104-...   211   1e-55

>AT2G20450.1 | Symbols:  | Ribosomal protein L14 |
           chr2:8813923-8815071 FORWARD LENGTH=134
          Length = 134

 Score =  215 bits (547), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 107/124 (86%), Positives = 115/124 (92%)

Query: 1   MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 60
           M FKRFVE+GRVALVNYG+DYG+LVVIVD++DQNRAL+DAPDMER QMNLKRLSLTDI I
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVI 60

Query: 61  DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 120
           DI RVPKKK LI AME ADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIKRAG 
Sbjct: 61  DINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGI 120

Query: 121 VRTE 124
           VR E
Sbjct: 121 VRQE 124


>AT4G27090.1 | Symbols:  | Ribosomal protein L14 |
           chr4:13594104-13595187 REVERSE LENGTH=134
          Length = 134

 Score =  211 bits (536), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 114/124 (91%)

Query: 1   MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 60
           M FKR+VE+GRVALVNYG+D+G+LVVIVD++DQNRAL+DAPDMER QMN KRLSLTDI I
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVI 60

Query: 61  DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 120
           DI RVPKKK LI AME ADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIK+AG 
Sbjct: 61  DINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGV 120

Query: 121 VRTE 124
           VR E
Sbjct: 121 VRQE 124