Miyakogusa Predicted Gene

Lj5g3v0110950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0110950.1 tr|A2Q3R6|A2Q3R6_MEDTR Poly(ADP-ribose)
polymerase, catalytic region OS=Medicago truncatula
GN=MTR_7,58.57,6e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; PARP_CATALYTIC,Poly(ADP-ribose) polymeras,CUFF.52590.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 | chr2:149168...    82   9e-17
AT1G32230.2 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prote...    82   2e-16
AT1G32230.3 | Symbols: AtRCD1 | WWE protein-protein interaction ...    81   2e-16
AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prote...    81   2e-16
AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 | chr1:265493...    52   1e-07
AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:835091...    52   2e-07
AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 | chr3:175927...    49   7e-07

>AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 |
           chr2:14916898-14919198 REVERSE LENGTH=568
          Length = 568

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 9/87 (10%)

Query: 1   MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
           MGNME LR   G N +Q+ +   +YDNGVDD++ P++Y IWNMN+NTHIYPEFV+SFK+S
Sbjct: 390 MGNMEPLR---GDN-TQYFTGGEEYDNGVDDVESPKHYLIWNMNMNTHIYPEFVVSFKLS 445

Query: 61  -RDVEGHFCGNVGEINDSRANYSGNSL 86
             + E    GN+     SR   SG +L
Sbjct: 446 IPNAE----GNILPTTQSRHESSGLTL 468


>AT1G32230.2 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE
           protein-protein interaction domain protein family |
           chr1:11613427-11615894 FORWARD LENGTH=588
          Length = 588

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 22/106 (20%)

Query: 1   MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
           MGNME+LR     + +QF S   +YDNGVDDI+ P+ Y +WN+N+NTHI+PEFV+ FK+S
Sbjct: 396 MGNMELLR----GDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLS 451

Query: 61  R--DVEGHFCG---NVG-------------EINDSRANYSGNSLAT 88
              + EG+      N G             E N +R + S NS+ +
Sbjct: 452 NLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNGARGSGSANSVGS 497


>AT1G32230.3 | Symbols: AtRCD1 | WWE protein-protein interaction
           domain protein family | chr1:11613427-11615748 FORWARD
           LENGTH=570
          Length = 570

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 22/106 (20%)

Query: 1   MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
           MGNME+LR     + +QF S   +YDNGVDDI+ P+ Y +WN+N+NTHI+PEFV+ FK+S
Sbjct: 396 MGNMELLR----GDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLS 451

Query: 61  R--DVEGHFCG---NVG-------------EINDSRANYSGNSLAT 88
              + EG+      N G             E N +R + S NS+ +
Sbjct: 452 NLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNGARGSGSANSVGS 497


>AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE
           protein-protein interaction domain protein family |
           chr1:11613427-11615894 FORWARD LENGTH=589
          Length = 589

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 6/69 (8%)

Query: 1   MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
           MGNME+LR     + +QF S   +YDNGVDDI+ P+ Y +WN+N+NTHI+PEFV+ FK+S
Sbjct: 396 MGNMELLR----GDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLS 451

Query: 61  R--DVEGHF 67
              + EG+ 
Sbjct: 452 NLPNAEGNL 460


>AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 |
           chr1:26549354-26550520 REVERSE LENGTH=305
          Length = 305

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 36/48 (75%)

Query: 11  IGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFK 58
           I T + Q   S++++D+GVD+++ PR Y IW+ N+N++I P +++SFK
Sbjct: 182 IVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFK 229


>AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 |
           chr1:8350912-8352232 FORWARD LENGTH=323
          Length = 323

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 1   MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
           +G  EI+  G    + Q   S++++D+GVDD+  PR Y IW+ N+N+ I P +++SF+  
Sbjct: 184 LGKPEIIISG----SKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILPSYIVSFRSP 239

Query: 61  R 61
           R
Sbjct: 240 R 240


>AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 |
           chr3:17592771-17593966 FORWARD LENGTH=316
          Length = 316

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 1   MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKV 59
           MG  E++      + SQ   S+ ++D+GVD +  P  Y IW+ ++NTH+ PEFV+  K 
Sbjct: 183 MGKSEVV-----CSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFVVCIKT 236