Miyakogusa Predicted Gene

Lj5g3v0108610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0108610.1 tr|I1HPQ6|I1HPQ6_BRADI 50S ribosomal protein L31
OS=Brachypodium distachyon GN=BRADI2G44440 PE=3 SV=,57.14,3e-19,L31:
ribosomal protein L31,Ribosomal protein L31; Ribosomal_L31,Ribosomal
protein L31; RIBOSOMALL31,,CUFF.52568.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75350.1 | Symbols: emb2184 | Ribosomal protein L31 | chr1:28...   155   1e-38

>AT1G75350.1 | Symbols: emb2184 | Ribosomal protein L31 |
           chr1:28272163-28272687 FORWARD LENGTH=144
          Length = 144

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/133 (57%), Positives = 98/133 (73%), Gaps = 10/133 (7%)

Query: 20  MAQCVTNTFVQGGK--PLLPL--PTKTTVG------RRAENVTVGVWCRKKDIHPKFYDD 69
           MA  + N+F+Q     P L L  P    V       RR+ N  V + CRKK++HP+F++D
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 70  AKVSCSGELVMTTGGTQKEYVVDVWSGNHPFFLGNRSASMISDDQVEKFKKKYGELTDIM 129
           AKV C+GELVMTTGGT+KEYVVDVWSGNHPF+LGNRSA M+  DQVEKF+K++  L++IM
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

Query: 130 EIPNLKGEIVIPS 142
           EIP LKGEI++P+
Sbjct: 121 EIPVLKGEIIMPT 133