Miyakogusa Predicted Gene

Lj5g3v0108330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0108330.1 tr|B1YJM5|B1YJM5_EXIS2 Ornithine
carbamoyltransferase, catabolic OS=Exiguobacterium sibiricum
(strai,54.55,2e-19,AOTCASE,Aspartate/ornithine carbamoyltransferase;
seg,NULL; Aspartate/ornithine carbamoyltransferase,CUFF.52553.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75330.1 | Symbols: OTC | ornithine carbamoyltransferase | ch...   111   8e-26

>AT1G75330.1 | Symbols: OTC | ornithine carbamoyltransferase |
           chr1:28266457-28268383 REVERSE LENGTH=375
          Length = 375

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 59/77 (76%)

Query: 1   MGQXXXXXXXXXXFKGFQVDQSLMDIAGSKALFMHCLPAEKGVEVTEEVIEGPKSIIFPQ 60
           MGQ          F+GFQVD++LM +AG KA FMHCLPAE+GVEVT  V+E P SI+FPQ
Sbjct: 298 MGQKDEAEARRKAFQGFQVDEALMKLAGQKAYFMHCLPAERGVEVTNGVVEAPYSIVFPQ 357

Query: 61  AENRLHAQNGIMLHVLG 77
           AENR+HAQN IMLH+LG
Sbjct: 358 AENRMHAQNAIMLHLLG 374