Miyakogusa Predicted Gene

Lj5g3v0108320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0108320.1 Non Chatacterized Hit- tr|J3NE08|J3NE08_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G2,56.47,2e-17,SUBFAMILY NOT NAMED,NULL; AUXILIN/CYCLIN
G-ASSOCIATED KINASE-RELATED,NULL; seg,NULL;
coiled-coil,NUL,CUFF.52567.1
         (1282 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36520.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...   113   8e-25
AT1G75310.1 | Symbols: AUL1 | auxin-like 1 protein | chr1:282610...   112   1e-24
AT4G12770.2 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    90   9e-18
AT4G12780.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    90   1e-17
AT4G12770.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    90   1e-17
AT1G21660.1 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    79   2e-14
AT4G12780.2 | Symbols:  | Chaperone DnaJ-domain superfamily prot...    79   2e-14

>AT4G36520.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein |
            chr4:17230589-17235435 REVERSE LENGTH=1422
          Length = 1422

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 77/109 (70%), Gaps = 3/109 (2%)

Query: 1175 YFGSSRD-NVKKQNFQSKSFSYGGRDSTDAFDGANGDSAQRCKARSERHQRIGERVAKAL 1233
            +FG   + ++  + FQ+ S S+G     D+  G  G+S QR  +R ERHQR  +RVAKAL
Sbjct: 1247 FFGERMEISLSDKQFQN-SVSFGASRYQDSH-GTEGESPQRYTSRLERHQRTADRVAKAL 1304

Query: 1234 EEKNMRDRLVQKEQEERNRVAEVLDADVKRWSAGKTGNLRALLSTLQYV 1282
             EKNMRD + Q+EQ ER R+AE LD +VKRWS+GK GN+RALLSTLQY+
Sbjct: 1305 AEKNMRDLVAQREQAERIRIAETLDTEVKRWSSGKEGNIRALLSTLQYI 1353



 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 38/238 (15%)

Query: 7   TATLSKKLSNGYGV-------SGRSA-------YEGVFAAPIKHRAPSFASPLGDYREIF 52
           +++L KK  NG          SG++A       Y+ VF  P +  AP+ +  L DY EIF
Sbjct: 13  SSSLPKKPYNGNNTTGGFSYNSGKTANTTTTTTYDDVFGGPPRFGAPTLSPRLEDYCEIF 72

Query: 53  ----GAGSGACSSIPILELPDLNEMRAAMDDVSRSKLDYSKXXXXXXXXXXAVPLEDLVA 108
               G+   A SSIP+L+LP +++ R    DV     DY +          A   E+L  
Sbjct: 73  SGFNGSSRAAVSSIPVLDLPLVDD-RDVYFDVRSQGFDYREVFGGFNDLDLAPSYEELFL 131

Query: 109 QTK---------VAEDSFTSRAPARSKVKSGNQSYQEDRTDCSKEIPAASQSSNDAKRIN 159
           Q K          ++D++T   P   +  SG   +   ++ C      +  S + +   N
Sbjct: 132 QQKSTTVVGDGDSSDDAWT---PEEVESCSGGTEHS-GKSPCFSNGRDSYDSIDGSTEFN 187

Query: 160 MSYH---QVSQGSQN-GTSAKTHIAQVHAVPAYTCLSEEVNSVKTNRANKPTPVAQDT 213
           +SY+   Q+S G  N  +S    +A + A+P YT   +   + K N+   P+ V + T
Sbjct: 188 ISYNKASQISGGETNMSSSGVIRVADLGAIPGYTVAVD--GTTKLNKVTGPSSVGRGT 243


>AT1G75310.1 | Symbols: AUL1 | auxin-like 1 protein |
            chr1:28261004-28266124 FORWARD LENGTH=1448
          Length = 1448

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 60/74 (81%)

Query: 1209 GDSAQRCKARSERHQRIGERVAKALEEKNMRDRLVQKEQEERNRVAEVLDADVKRWSAGK 1268
            G+  QRCKARSERHQR  +R A+AL EK +RD   QKEQ ERNR+AE LDADVKRWS+GK
Sbjct: 1306 GEPIQRCKARSERHQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEALDADVKRWSSGK 1365

Query: 1269 TGNLRALLSTLQYV 1282
              NLRAL+STLQY+
Sbjct: 1366 ENNLRALISTLQYI 1379



 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 121/437 (27%), Positives = 174/437 (39%), Gaps = 83/437 (18%)

Query: 2   ESGAATATLSKKLSN----GYGVSGRSAYEGVFAAPIKHRAPSFASPLGDYREIFGAGSG 57
           E      T S+K+SN        S  + Y+GVF++P+  +     SPL DY EIF     
Sbjct: 4   EKSPTATTFSRKISNNRSHSLSFSANAVYDGVFSSPVNSK-----SPLVDYGEIFRGSGP 58

Query: 58  ACSSIPILELPDLNEMRAAMDDVSRSKLDYSKXXXXXXXXXXAVPLEDLVAQ----TKVA 113
           + SSIP L++P+LN  +  +D V  SKLDYS           AV  ++++ +    T + 
Sbjct: 59  SPSSIPFLDVPELNVGKVKVD-VRSSKLDYSSVFGGLGACDFAVTPKEVIIKSEKKTSIN 117

Query: 114 EDSFTSRAPARSKVKSGNQSYQEDRTDCSKEIPAASQSSNDAKRINM-----SYHQVSQG 168
           ED        R++ K GN S          ++P  ++     + + M     SYHQ    
Sbjct: 118 EDK------KRNRRKGGNSS----------DVPLCNEGKKSPEMVRMKHSDISYHQTVPR 161

Query: 169 SQNGTSAKTHIAQVHAVPAYTCLSEEVNSVKTNRANKPTPVAQDTCSSSYCNEKIKEGGH 228
           ++NG    TH+ QV A                     P P+      ++    KI     
Sbjct: 162 NENGA---THLTQVPAT-------------------MPGPIPTQVVDNTSLLHKI----- 194

Query: 229 CMESFTGPSPAHAKKQSTDHG---VKVKHRSNS---VDL----------SYDAREISSGS 272
             ES + P PA  KK   + G   VK   +  S   VD           + D     + S
Sbjct: 195 --ESKSTPIPAVEKKLPCNEGREEVKASRKQGSKTEVDFENIFARDGCSTRDDSTCKTVS 252

Query: 273 NVTHHPKVPPSETMASKLDNKNNGDAMRSKETKSQTSKSGAPESATGADSPSYLXXXXXX 332
           N  +    PPS    +   N  +G + R     S  S+    E A    SP Y       
Sbjct: 253 NGEYRDVKPPSSFQCTL--NGEHGASERLSGLNSGPSERYETEDADSPSSPPYFDAETDE 310

Query: 333 XXXXXXXXXXLRKAIEEAQVRMKVAKESMRRKKEGFPDRVKRKSNVDLIAGGRKGAKLEN 392
                     L+KAIEEAQ+RM +AK+ M +KK GF    K KS  D     +   K+E 
Sbjct: 311 NSVAAESSAALKKAIEEAQIRMNIAKQMMEKKKSGFRSCAKLKSCDDSKIENKGNTKVEG 370

Query: 393 KTMKPEEINTMQTFGEM 409
            T +  + N  Q  GEM
Sbjct: 371 ITEESRD-NNSQILGEM 386


>AT4G12770.2 | Symbols:  | Chaperone DnaJ-domain superfamily protein |
            chr4:7506736-7511408 REVERSE LENGTH=889
          Length = 889

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 1197 GRDSTDAFDGANGDSAQRCKARSERHQRIGERVAKALEEKNMRDRLVQKEQEERNRVAEV 1256
            G   +  F   +G++ +R +AR ERHQR  ER AKAL EKN RD  VQ+EQ E++R+   
Sbjct: 734  GASQSGGFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGT 793

Query: 1257 LDADVKRWSAGKTGNLRALLSTLQYV 1282
            LD +++RW AGK GNLRALLSTLQYV
Sbjct: 794  LDVEIRRWGAGKEGNLRALLSTLQYV 819


>AT4G12780.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein |
            chr4:7512200-7516655 FORWARD LENGTH=904
          Length = 904

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 59/80 (73%)

Query: 1203 AFDGANGDSAQRCKARSERHQRIGERVAKALEEKNMRDRLVQKEQEERNRVAEVLDADVK 1262
             F   +G++ +R +AR ERHQR  ER AKAL EKN RD  VQ+EQ E++R+   LD ++K
Sbjct: 755  GFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQVEKDRIGVTLDVEIK 814

Query: 1263 RWSAGKTGNLRALLSTLQYV 1282
            RW AGK GNLRALLSTLQYV
Sbjct: 815  RWGAGKEGNLRALLSTLQYV 834


>AT4G12770.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein |
            chr4:7506736-7511408 REVERSE LENGTH=891
          Length = 891

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 59/80 (73%)

Query: 1203 AFDGANGDSAQRCKARSERHQRIGERVAKALEEKNMRDRLVQKEQEERNRVAEVLDADVK 1262
             F   +G++ +R +AR ERHQR  ER AKAL EKN RD  VQ+EQ E++R+   LD +++
Sbjct: 742  GFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIR 801

Query: 1263 RWSAGKTGNLRALLSTLQYV 1282
            RW AGK GNLRALLSTLQYV
Sbjct: 802  RWGAGKEGNLRALLSTLQYV 821


>AT1G21660.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein |
            chr1:7605924-7608835 FORWARD LENGTH=523
          Length = 523

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 1209 GDSAQRCKARSERHQRIGERVAKALEEKNMRDRLVQKEQEERNRVAEVLDADVKRWSAGK 1268
            G+S +R KAR +R QR   RVA+A+ + N RD   + EQE+R R++E +D +++RW+ GK
Sbjct: 380  GESEERRKARWDREQRTKSRVAQAVADMNNRDHQSRIEQEQRTRISETVDTEIRRWATGK 439

Query: 1269 TGNLRALLSTLQYV 1282
             GN+RALLS+L  V
Sbjct: 440  EGNMRALLSSLHIV 453


>AT4G12780.2 | Symbols:  | Chaperone DnaJ-domain superfamily protein |
            chr4:7512200-7516655 FORWARD LENGTH=894
          Length = 894

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 59/97 (60%), Gaps = 17/97 (17%)

Query: 1203 AFDGANGDSAQRCKARSERHQRIGERVAKALEEKNMRDRLVQKEQEERN----------- 1251
             F   +G++ +R +AR ERHQR  ER AKAL EKN RD  VQ+EQ E++           
Sbjct: 728  GFQDVDGETEERRRARLERHQRTQERAAKALAEKNERDLQVQREQVEKDNKKLRHLSILS 787

Query: 1252 ------RVAEVLDADVKRWSAGKTGNLRALLSTLQYV 1282
                  R+   LD ++KRW AGK GNLRALLSTLQYV
Sbjct: 788  HCFFPFRIGVTLDVEIKRWGAGKEGNLRALLSTLQYV 824