Miyakogusa Predicted Gene

Lj5g3v0105860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0105860.1 tr|G7IST4|G7IST4_MEDTR G-box binding factor bZIP
transcription factor OS=Medicago truncatula
GN=MTR_,21.18,0.00000003,RVT_3,NULL; Ribonuclease H-like,Ribonuclease
H-like domain,gene.g58347.t1.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38920.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    55   5e-08

>AT5G38920.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:15581719-15582439
           REVERSE LENGTH=192
          Length = 192

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 31/156 (19%)

Query: 65  VCAAAVMEALWECRNKVVFE-------------DGVATAATTSCLEHAL----------- 100
           + A  ++  LW+ RN +VF+                A+ A+  CLE              
Sbjct: 19  MVAPWILWRLWKNRNDLVFKGKQFDAPDMELGMQNAASVASAGCLETPTRTCFGWVQGLS 78

Query: 101 ---SPAVAEAQAFRWAVILAQELFFQDVHLETDCYSFYEAWLKGGDETYMGMLIRDCLLL 157
              S  V EA+A RWAV+    L ++ V  E+D        +  GD   +  +++D  LL
Sbjct: 79  MTQSALVTEAEAMRWAVLSLSRLNYRKVIFESDSQQLVSILVDNGDMPILDPILQDIKLL 138

Query: 158 SGNFRSFHVSFIRRTGNMAADFMAKLAYS----DPE 189
             +F      F+ R GN  AD +AK + S    DP+
Sbjct: 139 LQHFEETKFVFMHRGGNGVADRIAKESLSLENYDPK 174