Miyakogusa Predicted Gene

Lj5g3v0104840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0104840.1 NODE_42600_length_678_cov_20.333334.path1.1
         (97 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39250.1 | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:1827...   115   6e-27
AT2G21650.1 | Symbols: MEE3, ATRL2, RSM1 | Homeodomain-like supe...   115   8e-27
AT1G75250.1 | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:2824...   110   3e-25
AT1G75250.2 | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:2824...   108   6e-25
AT1G19510.1 | Symbols: ATRL5, RSM4, RL5 | RAD-like 5 | chr1:6756...    97   2e-21
AT2G18328.1 | Symbols: ATRL4, RL4 | RAD-like 4 | chr2:7964478-79...    92   9e-20
AT5G05790.1 | Symbols:  | Duplicated homeodomain-like superfamil...    84   2e-17
AT2G38090.1 | Symbols:  | Duplicated homeodomain-like superfamil...    82   6e-17
AT5G58900.1 | Symbols:  | Homeodomain-like transcriptional regul...    80   2e-16
AT3G11280.2 | Symbols:  | Duplicated homeodomain-like superfamil...    77   2e-15
AT3G11280.1 | Symbols:  | Duplicated homeodomain-like superfamil...    77   2e-15
AT4G36570.1 | Symbols: ATRL3, RL3 | RAD-like 3 | chr4:17254660-1...    73   4e-14
AT1G49010.1 | Symbols:  | Duplicated homeodomain-like superfamil...    70   3e-13
AT5G08520.1 | Symbols:  | Duplicated homeodomain-like superfamil...    70   4e-13
AT5G01200.1 | Symbols:  | Duplicated homeodomain-like superfamil...    67   2e-12
AT5G23650.1 | Symbols:  | Homeodomain-like transcriptional regul...    65   1e-11
AT5G04760.1 | Symbols:  | Duplicated homeodomain-like superfamil...    63   5e-11
AT3G10595.1 | Symbols:  | Duplicated homeodomain-like superfamil...    47   2e-06
AT3G10580.2 | Symbols:  | Homeodomain-like superfamily protein |...    47   3e-06
AT3G10580.1 | Symbols:  | Homeodomain-like superfamily protein |...    47   4e-06

>AT4G39250.1 | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 |
           chr4:18271457-18271857 REVERSE LENGTH=100
          Length = 100

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 65/91 (71%), Gaps = 4/91 (4%)

Query: 7   WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPL 66
           WT KQNK FE ALA YD+DTP+RWQ +A+ VGGKT EEVK+HYE+LV D+  IE GHVP 
Sbjct: 14  WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 67  PNYRNAATIGGSNKGYTYMDEEQRMKFLSLQ 97
           PNYR   T GG   G     EE+RM+ + LQ
Sbjct: 74  PNYR---TSGGCTNG-RLSQEEKRMRNMRLQ 100


>AT2G21650.1 | Symbols: MEE3, ATRL2, RSM1 | Homeodomain-like
           superfamily protein | chr2:9259654-9260419 FORWARD
           LENGTH=101
          Length = 101

 Score =  115 bits (287), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 68/91 (74%), Gaps = 3/91 (3%)

Query: 7   WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPL 66
           WT KQNK FE ALA+YD+DTPDRW  +ARAVGGKT EE K+ Y++LV D++ IE GHVP 
Sbjct: 14  WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 67  PNYRNAATIGGSNKGYTYMDEEQRMKFLSLQ 97
           P+Y+   T G SN+G    DEE+RM+ + LQ
Sbjct: 74  PDYK--TTTGNSNRG-RLRDEEKRMRSMKLQ 101


>AT1G75250.1 | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 |
          chr1:28245073-28245453 REVERSE LENGTH=126
          Length = 126

 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 57/69 (82%)

Query: 2  TSSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEE 61
          +S S WT  QNK FE ALA+YDKDTPDRW  +A+AVGGKTVEEVK+HY++LV+DL  IE 
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 62 GHVPLPNYR 70
          G VPLPNY+
Sbjct: 67 GRVPLPNYK 75


>AT1G75250.2 | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 |
          chr1:28244463-28245453 REVERSE LENGTH=97
          Length = 97

 Score =  108 bits (271), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/69 (69%), Positives = 57/69 (82%)

Query: 2  TSSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEE 61
          +S S WT  QNK FE ALA+YDKDTPDRW  +A+AVGGKTVEEVK+HY++LV+DL  IE 
Sbjct: 7  SSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

Query: 62 GHVPLPNYR 70
          G VPLPNY+
Sbjct: 67 GRVPLPNYK 75


>AT1G19510.1 | Symbols: ATRL5, RSM4, RL5 | RAD-like 5 |
          chr1:6756483-6757290 REVERSE LENGTH=100
          Length = 100

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 10 KQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPLPNY 69
          KQNK FE ALA+YDKDTPDRWQ +A+AVG K+ EEVK+HY++LV+DL  IE+  VPLP Y
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

Query: 70 RNAATIGGSNKGYTYMD 86
          +    +G  ++G    D
Sbjct: 75 K-TVDVGSKSRGIDDFD 90


>AT2G18328.1 | Symbols: ATRL4, RL4 | RAD-like 4 |
          chr2:7964478-7964711 FORWARD LENGTH=77
          Length = 77

 Score = 91.7 bits (226), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 51/62 (82%)

Query: 10 KQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPLPNY 69
          +++K+FE ALA +DKDTPDRWQK+ARAVGGK+ EEVK+HYE+L+ D+  IE G  P P Y
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73

Query: 70 RN 71
          RN
Sbjct: 74 RN 75


>AT5G05790.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr5:1740724-1741671 REVERSE LENGTH=277
          Length = 277

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 49/73 (67%)

Query: 4   SSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGH 63
           SS WT ++NK+FE ALA+Y  DTPDRW K+A  + GKT+ +V + Y  L +DL  IE G 
Sbjct: 28  SSSWTKEENKKFERALAVYADDTPDRWFKVAAMIPGKTISDVMRQYSKLEEDLFDIEAGL 87

Query: 64  VPLPNYRNAATIG 76
           VP+P YR+    G
Sbjct: 88  VPIPGYRSVTPCG 100


>AT2G38090.1 | Symbols:  | Duplicated homeodomain-like superfamily
          protein | chr2:15945278-15946775 FORWARD LENGTH=298
          Length = 298

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 7  WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPL 66
          WT ++NK+FENALA YDKDTPDRW ++A  + GKTV +V K Y  L +D+  IE G +P+
Sbjct: 29 WTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEAGLIPI 88

Query: 67 PNY 69
          P Y
Sbjct: 89 PGY 91


>AT5G58900.1 | Symbols:  | Homeodomain-like transcriptional
          regulator | chr5:23783275-23784667 REVERSE LENGTH=288
          Length = 288

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 7  WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPL 66
          WT  +NK FENALA+YD +TPDRWQK+A  + GKTV +V + Y  L  D+  IE G +P+
Sbjct: 34 WTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPV 93

Query: 67 PNY 69
          P Y
Sbjct: 94 PGY 96


>AT3G11280.2 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr3:3533477-3534393 REVERSE LENGTH=263
          Length = 263

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 7   WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPL 66
           WT ++NK FE ALAIY +D+PDRW K+A  + GKTV +V K Y  L +D+  IE G VP+
Sbjct: 33  WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query: 67  PNYRNAATIGGSN-------------------KGYTYMDEEQRMKFLSL 96
           P Y  A++  G +                   KG  + +EE R   L L
Sbjct: 93  PGYPAASSPLGFDTDMCRKRPSGARGSDQDRKKGVPWTEEEHRRFLLGL 141


>AT3G11280.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr3:3533477-3534393 REVERSE LENGTH=263
          Length = 263

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 19/109 (17%)

Query: 7   WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVPL 66
           WT ++NK FE ALAIY +D+PDRW K+A  + GKTV +V K Y  L +D+  IE G VP+
Sbjct: 33  WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query: 67  PNYRNAATIGGSN-------------------KGYTYMDEEQRMKFLSL 96
           P Y  A++  G +                   KG  + +EE R   L L
Sbjct: 93  PGYPAASSPLGFDTDMCRKRPSGARGSDQDRKKGVPWTEEEHRRFLLGL 141


>AT4G36570.1 | Symbols: ATRL3, RL3 | RAD-like 3 |
          chr4:17254660-17254836 FORWARD LENGTH=58
          Length = 58

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 37/44 (84%)

Query: 7  WTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYE 50
          WT K+NK FE ALA YD+DTPDRW  +ARAVGGK+ EEV++HYE
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYE 55


>AT1G49010.1 | Symbols:  | Duplicated homeodomain-like superfamily
          protein | chr1:18132714-18133778 FORWARD LENGTH=314
          Length = 314

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 49/68 (72%), Gaps = 3/68 (4%)

Query: 7  WTTKQNKRFENALAIY---DKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGH 63
          W+ ++ K FENA+A++   ++ T D+W K++  V  K +EEVKKHY++L++D+K IE G 
Sbjct: 8  WSREEEKAFENAIALHCVEEEITEDQWNKMSSMVPSKALEEVKKHYQILLEDVKAIENGQ 67

Query: 64 VPLPNYRN 71
          VPLP Y +
Sbjct: 68 VPLPRYHH 75


>AT5G08520.1 | Symbols:  | Duplicated homeodomain-like superfamily
          protein | chr5:2755470-2757741 REVERSE LENGTH=298
          Length = 298

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 49/69 (71%)

Query: 1  MTSSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIE 60
          ++  S W+ + +  FE ALA    ++ +RW+K+A  V GK+VE++K+HYE+LV+D+ +IE
Sbjct: 6  VSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIE 65

Query: 61 EGHVPLPNY 69
           G VPLP Y
Sbjct: 66 SGCVPLPAY 74


>AT5G01200.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr5:77116-78294 FORWARD LENGTH=267
          Length = 267

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 2/79 (2%)

Query: 7   WTTKQNKRFENALA-IYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVP 65
           WT ++NKRFE ALA + DKD  + W K+A  + GKTV +V K Y+ L DD+  IE G +P
Sbjct: 30  WTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIP 89

Query: 66  LPNYRNAATIGGSNKGYTY 84
           +P Y   A+   +N  Y +
Sbjct: 90  IPGYGGDAS-SAANSDYFF 107


>AT5G23650.1 | Symbols:  | Homeodomain-like transcriptional
          regulator | chr5:7969812-7971019 FORWARD LENGTH=337
          Length = 337

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 44/69 (63%)

Query: 1  MTSSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIE 60
          ++  S W+   +  FE ALAIY+  T  RW+K+A  V GKT+E+V +HY +L  D+  IE
Sbjct: 7  ISVGSSWSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDVMLIE 66

Query: 61 EGHVPLPNY 69
           G V LP+Y
Sbjct: 67 SGCVRLPDY 75


>AT5G04760.1 | Symbols:  | Duplicated homeodomain-like superfamily
          protein | chr5:1373752-1374529 REVERSE LENGTH=215
          Length = 215

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 3  SSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEG 62
          +SS WT  ++K FE AL ++ + +P+RW+++A  +  K+  EV++HYE+LV D+ +I+ G
Sbjct: 2  ASSQWTRSEDKMFEQALVLFPEGSPNRWERIADQL-HKSAGEVREHYEVLVHDVFEIDSG 60

Query: 63 HVPLPNY 69
           V +P+Y
Sbjct: 61 RVDVPDY 67


>AT3G10595.1 | Symbols:  | Duplicated homeodomain-like superfamily
          protein | chr3:3311905-3312815 REVERSE LENGTH=183
          Length = 183

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 3  SSSGWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEG 62
          + + WTT++N+ F++AL ++      R++ +A  V  ++V++VK+HY+ LV+DL ++   
Sbjct: 2  AENSWTTEENEMFKDALVMFTAFLLTRFESVAEYVD-RSVDDVKEHYKELVNDLLEMGSS 60

Query: 63 HVPLPN 68
           V  PN
Sbjct: 61 RVAFPN 66


>AT3G10580.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:3307083-3308230 REVERSE LENGTH=256
          Length = 256

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 7   WTTKQNKRFENALAIYDKD-TPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVP 65
           W    +KRFE AL  +  + +PD  + +A+ +  K ++EV  +Y+ LVDD+  IE G  P
Sbjct: 8   WKRDDDKRFELALVRFPAEGSPDFLENIAQFLQ-KPLKEVYSYYQALVDDVTLIESGKYP 66

Query: 66  LPNYRNAATIG------------GSNKGYTYMDEEQRM 91
           LP Y     +             G  KG  +  EE R+
Sbjct: 67  LPKYPEDDYVSLPEATKSKTQGTGKKKGIPWSPEEHRL 104


>AT3G10580.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:3307083-3308230 REVERSE LENGTH=287
          Length = 287

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 7   WTTKQNKRFENALAIYDKD-TPDRWQKLARAVGGKTVEEVKKHYEMLVDDLKQIEEGHVP 65
           W    +KRFE AL  +  + +PD  + +A+ +  K ++EV  +Y+ LVDD+  IE G  P
Sbjct: 8   WKRDDDKRFELALVRFPAEGSPDFLENIAQFLQ-KPLKEVYSYYQALVDDVTLIESGKYP 66

Query: 66  LPNYRNAATIG------------GSNKGYTYMDEEQRM 91
           LP Y     +             G  KG  +  EE R+
Sbjct: 67  LPKYPEDDYVSLPEATKSKTQGTGKKKGIPWSPEEHRL 104