Miyakogusa Predicted Gene

Lj5g3v0104830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0104830.1 tr|G7IWS7|G7IWS7_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_3g030590 PE=4
SV=1,39.6,3e-16,UBN2_3,NULL,CUFF.52538.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48720.1 | Symbols:  | unknown protein; Has 229 Blast hits to...    55   1e-08

>AT1G48720.1 | Symbols:  | unknown protein; Has 229 Blast hits to
          229 proteins in 10 species: Archae - 0; Bacteria - 0;
          Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0;
          Other Eukaryotes - 0 (source: NCBI BLink). |
          chr1:18018148-18018441 FORWARD LENGTH=97
          Length = 97

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 2  MGSNGNIPANLPIFDGKNWDQWCSKMRVIFNFQEVGDYVDGGYAQLGENP---TEAQRTA 58
          M SN N+P  +P+    N+D W  +M+ I    +V + V+ G+ +  EN    ++ Q+  
Sbjct: 1  MASN-NVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIE-PENEGSLSQTQKDG 58

Query: 59 HKAAKKNDQKALFYIHQCVNSKVFDKISESKTSKEA 94
           + ++K D+KAL  I+Q ++   F+K+ E+ ++K+ 
Sbjct: 59 LRDSRKRDKKALCLIYQGLDEDTFEKVVEATSAKDG 94