Miyakogusa Predicted Gene

Lj5g3v0091580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0091580.1 Non Chatacterized Hit- tr|Q8LBD4|Q8LBD4_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,50,2e-18,seg,NULL,gene.g58320.t1.1
         (570 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...   170   2e-42

>AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr3:4014455-4017675 FORWARD LENGTH=638
          Length = 638

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 192/628 (30%), Positives = 270/628 (42%), Gaps = 145/628 (23%)

Query: 16  LWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHLNSQSERVESNKLSRSRRNK 75
           LWDHLA ++D Y  S  ++    K  LIS  +        L+S+ ++  S+K + +RR +
Sbjct: 80  LWDHLAESVDEYFSSN-VEGTTIKSSLISSHE--DKALVPLDSEYDKGRSDKSNGARRGR 136

Query: 76  DWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQSPPSPVQRKRRRSVDQQKTK 135
            W+      +E P L +SE  +                        QRKR R+ D +  +
Sbjct: 137 QWRSQPTNVSEIPPLLSSEAQS------------------------QRKRSRTDDSRNEQ 172

Query: 136 RDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGTPVETXXXXXXXXXXXXXXXXXXXEHP 195
           R++   V+    RRLLQFAVRDA+A SRP NS T  E+                   +  
Sbjct: 173 REAKPDVS----RRLLQFAVRDALAISRPANSST--ESSLKRLRSVVSTSTQNSSDPDPA 226

Query: 196 QRMQTT-RVANPTSTVLKAVPEAAEDAVKFKYSGSVFDRLGCNINRSDGNRKLDDDY--- 251
           +++++  RV NP +TV+KAV EAAEDA K K   SVFDR    I+ S G+  LD +    
Sbjct: 227 RKIRSVARVVNPMATVMKAVAEAAEDAKKPKSGRSVFDR----ISHSTGSETLDQNMVLG 282

Query: 252 -------------QHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFLSDSTSDDEGFDDV 298
                        Q QE  QL Y Q       Y  NM+T  ++T    D +SD       
Sbjct: 283 EVSPKDEESRNFSQGQEAVQLQYTQSLANNGVYFENMTT--NDTGLNPDFSSDR------ 334

Query: 299 NVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDENVSLERNRDQEQSAVTPNTSKIV 358
             +G  V+  S   +  GNR ++   + + +    D++  ++    Q +        K  
Sbjct: 335 GRLGSSVN-VSHPSTYLGNRINNPNSLQHRLV---DDSKRVKGTNYQNRLPEVATKHKTA 390

Query: 359 NISVNVNTWKPPGPAQCQEPRKV--------------------AELDGQKTLNSNIGAPR 398
           + S N++T K     + +E RK+                     +L  QK L   IG   
Sbjct: 391 SFSGNIDTGK---TVKLEEQRKIPDVGLQRYMDEGRLVSSEATTQLSTQKILGDTIGNGN 447

Query: 399 SDPRL-VKENARALKTNHGNVSELYPGFEESASE---------GTTIDCW---------- 438
             P   VKE +   K+  G +S   P  E+++S          G T D            
Sbjct: 448 VKPAASVKEESTTNKSVPGTLSTTRP-LEDASSRTIFVANVHFGATKDSLSRHFNKFGEV 506

Query: 439 ----------------AAYVEFMSKEAADNALSLDGTSFMSRILKVVRKS-AAPQEYAPA 481
                           +AY+EF  KEAA+NALSLDGTSFMSRILK+V+ S    QE A +
Sbjct: 507 LKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILKIVKGSNGQNQEAASS 566

Query: 482 LPWPRGVRGSPFPSARFSRAP-FPRGVVGAFSPRPPVKFGSRSLQWKRDAQGIXXXXXXX 540
           + W RG         RF+RAP + RG  GA   R  V+ G RS+QWKRD+          
Sbjct: 567 MSWSRG--------GRFTRAPSYFRG--GAVRGRSVVRGGGRSMQWKRDS-------ADT 609

Query: 541 XXXXXXXXPGARGLTYVRTESKLDASLN 568
                     AR LTYVR ESK D   N
Sbjct: 610 GNNNNVAPNNARSLTYVRAESKSDGVAN 637