Miyakogusa Predicted Gene

Lj5g3v0086230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0086230.1 Non Chatacterized Hit- tr|I1M8F2|I1M8F2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45814
PE,76.37,0,seg,NULL; PEROXISOMAL BIOGENESIS FACTOR 11,Peroxisomal
biogenesis factor 11; PEX11,Peroxisomal bioge,CUFF.52501.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47750.1 | Symbols: PEX11A | peroxin 11A | chr1:17569388-1757...   266   1e-71
AT3G47430.1 | Symbols: PEX11B | peroxin 11B | chr3:17480798-1748...    82   3e-16
AT1G01820.1 | Symbols: PEX11C | peroxin 11c | chr1:296213-297723...    50   1e-06
AT2G45740.3 | Symbols: PEX11D | peroxin 11D | chr2:18839865-1884...    50   1e-06
AT2G45740.2 | Symbols: PEX11D | peroxin 11D | chr2:18839865-1884...    50   1e-06
AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839865-1884...    50   1e-06

>AT1G47750.1 | Symbols: PEX11A | peroxin 11A |
           chr1:17569388-17570134 REVERSE LENGTH=248
          Length = 248

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 167/236 (70%), Gaps = 4/236 (1%)

Query: 33  RDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSR 92
           RDFLNH+E YL+KRDGVDKLLKISRY TK++LASS  L+    ++  RLK+FESSVGVSR
Sbjct: 15  RDFLNHLETYLSKRDGVDKLLKISRYATKIILASS--LIPETRSIIPRLKSFESSVGVSR 72

Query: 93  KAFRLGKFVQDLNALGAS--DPKRDLVFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHSR 150
           KAFRLGKFVQD+NAL +S  D   +LV  +IAYGGEG YYFVEQF+WL KSGLID KHS+
Sbjct: 73  KAFRLGKFVQDINALRSSRWDSNHELVLLIIAYGGEGLYYFVEQFIWLTKSGLIDAKHSK 132

Query: 151 TLGKISAWAEFVGYFGSIALKLRDLRLIIEDEACLQSSVEIAGLRGVXXXXXXXXXXXXX 210
            L KISAWAE VGY GS+++K+RDLR + ++E+C+ S++EI+  RG+             
Sbjct: 133 WLQKISAWAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEKMKMIK 192

Query: 211 XXXXMKQLSVVQDLADGLMALDDILDGKAPFSKPXXXXXXXXXXXXXXTHKNWVSC 266
               +K LS++QDLADGLM + DI DGK   S P              THKNW+SC
Sbjct: 193 EKKTLKVLSILQDLADGLMTIADIRDGKGVLSAPNVISSAGLFSAIVSTHKNWISC 248


>AT3G47430.1 | Symbols: PEX11B | peroxin 11B |
           chr3:17480798-17481692 FORWARD LENGTH=227
          Length = 227

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 9/135 (6%)

Query: 34  DFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRK 93
           D ++ +  +LAKRDG+DKL+K  +Y  KL   +  ++  +    + R K +E + G+SRK
Sbjct: 4   DTVDKLVVFLAKRDGIDKLVKTFQYVAKL---ACWHVEATRPEAADRFKKWEVASGLSRK 60

Query: 94  AFRLGKFVQDLNAL----GASDPKRDLVFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHS 149
           AFR G+ +   NAL    GA+   R L  +V+A  GE  Y+F + F+WL++ G ID K +
Sbjct: 61  AFRTGRSLTGFNALRRNPGATPMIRFL--AVLANSGEMVYFFFDHFLWLSRIGSIDAKLA 118

Query: 150 RTLGKISAWAEFVGY 164
           + +  ISA+ E  GY
Sbjct: 119 KKMSFISAFGESFGY 133


>AT1G01820.1 | Symbols: PEX11C | peroxin 11c | chr1:296213-297723
           REVERSE LENGTH=235
          Length = 235

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 17/133 (12%)

Query: 33  RDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRS-DTNLSQRLKAFESSVGVS 91
           R  L  V  YL K +  DK+ +  +Y +K L    P   ++ D N S           ++
Sbjct: 8   RAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTS-----------LA 56

Query: 92  RKAFRLGKFVQDLNALGASDPK-RDLVFSVIAYGGEGF---YYFVEQFVWLAKSGLI-DP 146
           RK FRL KFV DL+AL +  PK   L   ++          + F++Q VWL ++G+  D 
Sbjct: 57  RKVFRLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDK 116

Query: 147 KHSRTLGKISAWA 159
           + +  LG+IS + 
Sbjct: 117 ERAEILGRISLFC 129


>AT2G45740.3 | Symbols: PEX11D | peroxin 11D |
           chr2:18839865-18841102 FORWARD LENGTH=236
          Length = 236

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 33  RDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSR 92
           R  L  V  YL K +  DKL +  +Y +K L    P   ++           + S  ++R
Sbjct: 9   RAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQN----------VDKSTSLAR 58

Query: 93  KAFRLGKFVQDLNALGASDPK-RDLVFSVIAYGGEGF---YYFVEQFVWLAKSGLIDPKH 148
           K FRL KFV DL+ L +  PK   L   ++          + F++Q VWL +SG+   K 
Sbjct: 59  KVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKE 118

Query: 149 -SRTLGKISAWA 159
            +  LG+IS + 
Sbjct: 119 RAELLGRISLFC 130


>AT2G45740.2 | Symbols: PEX11D | peroxin 11D |
           chr2:18839865-18841102 FORWARD LENGTH=236
          Length = 236

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 33  RDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSR 92
           R  L  V  YL K +  DKL +  +Y +K L    P   ++           + S  ++R
Sbjct: 9   RAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQN----------VDKSTSLAR 58

Query: 93  KAFRLGKFVQDLNALGASDPK-RDLVFSVIAYGGEGF---YYFVEQFVWLAKSGLIDPKH 148
           K FRL KFV DL+ L +  PK   L   ++          + F++Q VWL +SG+   K 
Sbjct: 59  KVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKE 118

Query: 149 -SRTLGKISAWA 159
            +  LG+IS + 
Sbjct: 119 RAELLGRISLFC 130


>AT2G45740.1 | Symbols: PEX11D | peroxin 11D |
           chr2:18839865-18841102 FORWARD LENGTH=236
          Length = 236

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 33  RDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSR 92
           R  L  V  YL K +  DKL +  +Y +K L    P   ++           + S  ++R
Sbjct: 9   RAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQN----------VDKSTSLAR 58

Query: 93  KAFRLGKFVQDLNALGASDPK-RDLVFSVIAYGGEGF---YYFVEQFVWLAKSGLIDPKH 148
           K FRL KFV DL+ L +  PK   L   ++          + F++Q VWL +SG+   K 
Sbjct: 59  KVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKE 118

Query: 149 -SRTLGKISAWA 159
            +  LG+IS + 
Sbjct: 119 RAELLGRISLFC 130