Miyakogusa Predicted Gene

Lj5g3v0080880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0080880.1 Non Chatacterized Hit- tr|Q8LCG5|Q8LCG5_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,54.87,2e-19,seg,NULL,CUFF.52474.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   100   3e-22

>AT1G71430.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 64
           Blast hits to 64 proteins in 28 species: Archae - 0;
           Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42;
           Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr1:26920564-26921058 FORWARD LENGTH=164
          Length = 164

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 10/112 (8%)

Query: 3   ERSKELLQFEHKDLPFSST--ESALLVCDNKRESK---RIPSNGSLKTAPVPPSQLLGKV 57
           E  K+LL+ E K+ P SS+  +SALL+C +K + K     P       APVP SQLLGK+
Sbjct: 5   ENCKDLLKLELKN-PSSSSAMDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKL 63

Query: 58  RDFLGVMSEANKRLELDAKDHPENYNIEELTGNESQVIEMDLMLGVADLHTP 109
           + FLGVM+EANK+ E     +PE YNIE LTGNES++IEMDLMLGVADL+TP
Sbjct: 64  KGFLGVMAEANKKSEA----NPEAYNIEALTGNESELIEMDLMLGVADLNTP 111