Miyakogusa Predicted Gene

Lj5g3v0069830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0069830.1 tr|G7LCF5|G7LCF5_MEDTR Poly(A) polymerase
OS=Medicago truncatula GN=MTR_8g106560 PE=4
SV=1,68.97,0,PAP_central,Poly(A) polymerase, central domain;
PAP_RNA-bind,Poly(A) polymerase, RNA-binding domain;,CUFF.52472.1
         (497 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   414   e-116
AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   413   e-115
AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   353   2e-97
AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   352   2e-97
AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   352   3e-97
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   352   3e-97
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   8e-96
AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   8e-96
AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   8e-96
AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase | chr4...   347   9e-96
AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   9e-96
AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   9e-96
AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymeras...   347   1e-95
AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   1e-95
AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   347   2e-95
AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   346   2e-95
AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:20444...    88   2e-17

>AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6191418 REVERSE LENGTH=713
          Length = 713

 Score =  414 bits (1064), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/506 (47%), Positives = 293/506 (57%), Gaps = 62/506 (12%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           +LVSRFFRV+ QW WPN + LC  +EGSLGLQVWDPR  PK+R H+MPIITPAYPCMNSS
Sbjct: 259 ILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPIITPAYPCMNSS 318

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL IM  EFQRG+EICEA+E+NKADWDTLFEP+ FFE+YKNYLQIDISA N DD
Sbjct: 319 YNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYLQIDISAANVDD 378

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPLHCSYFMGLQRKQGVPVN 180
           LR WKGWVESRLRQLTLKIE+H + ML  HPHP +F D SRPLHCSYFMGLQRKQGVP  
Sbjct: 379 LRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPLHCSYFMGLQRKQGVPAA 437

Query: 181 DGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITWE 240
           +GEQFDIR TVEEFK TVN Y LW PGM+I + H+KRR++PNFVFPGGVRPS  +K TW+
Sbjct: 438 EGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPGGVRPSHTSKGTWD 497

Query: 241 SKRNSE-----LMISGNGQAEKSEEDKVVVLGEN---DDRKRK--QAEDSLDDLRNSKSF 290
           S R SE        +       +E       G N   D +KRK   +E   D  RNSK  
Sbjct: 498 SNRRSEHRNSSTSSAPAATTTTTEMSSESKAGSNSPVDGKKRKWGDSETLTDQPRNSKHI 557

Query: 291 ASLPPSSREVDEDINPIGTASSCFVECDDAEVNSMSEQNIEKPDLESSGECPSRDRETTG 350
           A   P                     C+    N         P + S    P +D  T G
Sbjct: 558 AVSVPVE------------------NCEGGSPN---------PSVGSICSSPMKDYCTNG 590

Query: 351 SVRNNSNVNPMPII-FATDTSSSKEAEKLAIEKIMPGPYDAHQAFPKEPDELENDIEDKN 409
                S   P  ++ F+ D   S   EK+A  +       AH     E +ELE   +  N
Sbjct: 591 KSEPISKDPPENVVAFSKDPPESLPIEKIATPQ-------AH-----ETEELEESFDFGN 638

Query: 410 RVKDFGMNTQTRNLDSSNSSSCVAEEPVVSKTETTCSTNLYSRGVXXXXXXXXXXXXXXS 469
           +V +            S+  + ++    +   E T + + +                  +
Sbjct: 639 QVIE----------QISHKVAVLSATATIPPFEATSNGSPFPYEAVEELEVLPTRQPDAA 688

Query: 470 GTPAPVPERKPLIRFNFTSLGKAADK 495
             P+ V +RKP+I+ +FTSLGK   K
Sbjct: 689 HRPS-VQQRKPIIKLSFTSLGKTNGK 713


>AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6190318 REVERSE LENGTH=586
          Length = 586

 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/506 (47%), Positives = 293/506 (57%), Gaps = 62/506 (12%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           +LVSRFFRV+ QW WPN + LC  +EGSLGLQVWDPR  PK+R H+MPIITPAYPCMNSS
Sbjct: 132 ILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPIITPAYPCMNSS 191

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL IM  EFQRG+EICEA+E+NKADWDTLFEP+ FFE+YKNYLQIDISA N DD
Sbjct: 192 YNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYLQIDISAANVDD 251

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPLHCSYFMGLQRKQGVPVN 180
           LR WKGWVESRLRQLTLKIE+H + ML  HPHP +F D SRPLHCSYFMGLQRKQGVP  
Sbjct: 252 LRKWKGWVESRLRQLTLKIERH-FKMLHCHPHPHDFQDTSRPLHCSYFMGLQRKQGVPAA 310

Query: 181 DGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITWE 240
           +GEQFDIR TVEEFK TVN Y LW PGM+I + H+KRR++PNFVFPGGVRPS  +K TW+
Sbjct: 311 EGEQFDIRRTVEEFKHTVNAYTLWIPGMEISVGHIKRRSLPNFVFPGGVRPSHTSKGTWD 370

Query: 241 SKRNSE-----LMISGNGQAEKSEEDKVVVLGEN---DDRKRK--QAEDSLDDLRNSKSF 290
           S R SE        +       +E       G N   D +KRK   +E   D  RNSK  
Sbjct: 371 SNRRSEHRNSSTSSAPAATTTTTEMSSESKAGSNSPVDGKKRKWGDSETLTDQPRNSKHI 430

Query: 291 ASLPPSSREVDEDINPIGTASSCFVECDDAEVNSMSEQNIEKPDLESSGECPSRDRETTG 350
           A   P                     C+    N         P + S    P +D  T G
Sbjct: 431 AVSVPVE------------------NCEGGSPN---------PSVGSICSSPMKDYCTNG 463

Query: 351 SVRNNSNVNPMPII-FATDTSSSKEAEKLAIEKIMPGPYDAHQAFPKEPDELENDIEDKN 409
                S   P  ++ F+ D   S   EK+A  +       AH     E +ELE   +  N
Sbjct: 464 KSEPISKDPPENVVAFSKDPPESLPIEKIATPQ-------AH-----ETEELEESFDFGN 511

Query: 410 RVKDFGMNTQTRNLDSSNSSSCVAEEPVVSKTETTCSTNLYSRGVXXXXXXXXXXXXXXS 469
           +V +            S+  + ++    +   E T + + +                  +
Sbjct: 512 QVIE----------QISHKVAVLSATATIPPFEATSNGSPFPYEAVEELEVLPTRQPDAA 561

Query: 470 GTPAPVPERKPLIRFNFTSLGKAADK 495
             P+ V +RKP+I+ +FTSLGK   K
Sbjct: 562 HRPS-VQQRKPIIKLSFTSLGKTNGK 586


>AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=797
          Length = 797

 Score =  353 bits (905), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 154/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  L   VWDPRK  ++RYHLMPIITPAYPCMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ IC+ +E NK  W +LF+ Y FFE+YKNYLQ+D+ A +A+D
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPL-HCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D S+   HC++FMGLQR  G   
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAK 236
            + +QFDIR TV+EF+Q VNMYM W+PGMD+H+SHV+RR +P+FVFP G + SR ++
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSR 507


>AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=787
          Length = 787

 Score =  352 bits (904), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 154/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  L   VWDPRK  ++RYHLMPIITPAYPCMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ IC+ +E NK  W +LF+ Y FFE+YKNYLQ+D+ A +A+D
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPL-HCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D S+   HC++FMGLQR  G   
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAK 236
            + +QFDIR TV+EF+Q VNMYM W+PGMD+H+SHV+RR +P+FVFP G + SR ++
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSR 507


>AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=786
          Length = 786

 Score =  352 bits (904), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 154/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  L   VWDPRK  ++RYHLMPIITPAYPCMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ IC+ +E NK  W +LF+ Y FFE+YKNYLQ+D+ A +A+D
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPL-HCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D S+   HC++FMGLQR  G   
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAK 236
            + +QFDIR TV+EF+Q VNMYM W+PGMD+H+SHV+RR +P+FVFP G + SR ++
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSR 507


>AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026123-11030440 REVERSE LENGTH=800
          Length = 800

 Score =  352 bits (903), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 154/237 (64%), Positives = 186/237 (78%), Gaps = 1/237 (0%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  L   VWDPRK  ++RYHLMPIITPAYPCMNSS
Sbjct: 271 MLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSS 330

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ IC+ +E NK  W +LF+ Y FFE+YKNYLQ+D+ A +A+D
Sbjct: 331 YNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAED 390

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRPL-HCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D S+   HC++FMGLQR  G   
Sbjct: 391 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRHCAFFMGLQRADGFGG 450

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAK 236
            + +QFDIR TV+EF+Q VNMYM W+PGMD+H+SHV+RR +P+FVFP G + SR ++
Sbjct: 451 QECQQFDIRGTVDEFRQEVNMYMFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQSR 507


>AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854443 FORWARD LENGTH=765
          Length = 765

 Score =  347 bits (891), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  347 bits (891), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  347 bits (891), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854266 FORWARD LENGTH=745
          Length = 745

 Score =  347 bits (891), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  347 bits (891), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  347 bits (891), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase |
           chr4:15850134-15854375 FORWARD LENGTH=741
          Length = 741

 Score =  347 bits (890), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=735
          Length = 735

 Score =  347 bits (890), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853906 FORWARD LENGTH=716
          Length = 716

 Score =  347 bits (889), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853810 FORWARD LENGTH=730
          Length = 730

 Score =  346 bits (888), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 210/305 (68%), Gaps = 18/305 (5%)

Query: 1   MLVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRYHLMPIITPAYPCMNSS 60
           MLVSRFFRVYTQWRWPNPVMLC IEE  LG  VWD RK  ++RYHLMPIITPAYPCMNSS
Sbjct: 269 MLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHLMPIITPAYPCMNSS 328

Query: 61  YNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENADD 120
           YNVS STL +M E+FQ G+ I + +E NK  W +LFE Y FFE+YKNYLQ+DI A +A+D
Sbjct: 329 YNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYKNYLQVDIVAADAED 388

Query: 121 LRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDKSRP-LHCSYFMGLQRKQGVPV 179
           L  WKGWVESR RQLTLKIE+ T GML  HP P E+ D +R  LHC++FMGLQR +GV  
Sbjct: 389 LLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHCAFFMGLQRAEGVGG 448

Query: 180 NDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIPNFVFPGGVRPSRPAKITW 239
            + +QFDIR TV+EF+Q VNMYM WKPGMD+ +SHV+RR +P FVFP G R  R ++   
Sbjct: 449 QECQQFDIRGTVDEFRQEVNMYMFWKPGMDVFVSHVRRRQLPPFVFPNGYRRPRQSR--- 505

Query: 240 ESKRNSELMISGNGQAEKSEEDKVVVL-GENDDRKRKQAEDS-LDDLRNSK--SFASLPP 295
                       N    KS ED  V   G   +R  K+  DS + D+R  K    ASL P
Sbjct: 506 ----------HQNLPGGKSGEDGSVSHSGSVVERHAKRKNDSEMMDVRPEKPEKRASLSP 555

Query: 296 SSREV 300
            S ++
Sbjct: 556 QSLDI 560


>AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 |
           chr3:2044443-2047034 FORWARD LENGTH=507
          Length = 507

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 25/223 (11%)

Query: 2   LVSRFFRVYTQWRWPNPVMLCPIEEGSLGLQVWDPRKYPKNRY--HLMPIITPAYPCMNS 59
           L++ FF  +  W+WP PV+L  +E+            YP       LMPI  P       
Sbjct: 248 LLANFFYTFAHWQWPTPVVL--LED-----------TYPSTGAPPGLMPIQLPCGSHQYC 294

Query: 60  SYNVSASTLHIMMEEFQRGSEICEAVEANKADWDTLFEPYPFFESYKNYLQIDISAENAD 119
           +  ++ ST + ++ EF  G  + +        W  LFE YP+  +Y  + +I +SA N +
Sbjct: 295 NSTITRSTFYKIVAEFLLGHNLTKDYLKLNFSWKDLFELYPYANTYTWFTKIHLSAANQE 354

Query: 120 DLRLWKGWVESRLRQLTLKIEKHTYGMLQSHPHPGEFSDK-SRPLHCSYFMGLQRKQGVP 178
           DL  W GWV+SR R L +KIE+  YG+    P+P E+ +  ++  +  ++ GLQ +  + 
Sbjct: 355 DLSDWVGWVKSRFRCLLIKIEE-VYGI--CDPNPTEYVETYTKQPNIVFYWGLQLRT-IN 410

Query: 179 VNDGEQFDIRLTVEEFKQTVNMYMLWKPGMDIHISHVKRRNIP 221
           V+D E   I     +F + VN          I ++ VK   +P
Sbjct: 411 VSDIESVKI-----DFLKNVNSGSFRGTVGRIQLTLVKASQLP 448