Miyakogusa Predicted Gene
- Lj5g3v0035410.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0035410.2 tr|D7KAU1|D7KAU1_ARALL ATRBP47C OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_473892 PE=4
SV=1,26.56,0.00000000009,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain;
,CUFF.52448.2
(314 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 412 e-115
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 411 e-115
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 388 e-108
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 379 e-105
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 327 5e-90
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 320 6e-88
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 316 1e-86
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 306 2e-83
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 304 4e-83
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 272 2e-73
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 250 1e-66
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 135 3e-32
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 134 7e-32
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 132 4e-31
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 131 5e-31
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 130 1e-30
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 112 3e-25
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 103 1e-22
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 102 4e-22
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 102 4e-22
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 100 2e-21
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 100 2e-21
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 97 2e-20
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 95 5e-20
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 89 3e-18
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 89 5e-18
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 75 6e-14
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 2e-13
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 70 2e-12
AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 70 2e-12
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 7e-12
AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 67 1e-11
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 67 2e-11
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 65 8e-11
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 9e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 6e-10
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 58 7e-09
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 8e-09
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 8e-09
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 8e-09
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 1e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 2e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 2e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 2e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 2e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 57 2e-08
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 56 3e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 56 3e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 56 4e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 55 5e-08
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 55 6e-08
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 55 7e-08
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 55 7e-08
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 55 7e-08
AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 54 1e-07
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 53 2e-07
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 53 3e-07
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 53 3e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 3e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 3e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 3e-07
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 53 3e-07
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 5e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 52 5e-07
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 5e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 52 5e-07
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 5e-07
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 51 1e-06
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 51 1e-06
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 50 2e-06
AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 50 2e-06
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 50 2e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 2e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 2e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 50 3e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 50 3e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 3e-06
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 49 5e-06
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 7e-06
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/303 (69%), Positives = 236/303 (77%), Gaps = 6/303 (1%)
Query: 1 MDENYLHRCFAS--TGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPN 58
MDE YL+ FAS EI S+KVIRNK GLSEGYGFVEF SH A+KVL+ + G MPN
Sbjct: 112 MDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN 171
Query: 59 TDQPFRLNWATFSTGEK-TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
TDQPFRLNWA+FSTGEK +N DLSIFVGDL+ DV+D+LLHETF+ YPSVKAAKVV
Sbjct: 172 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL 231
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXX--XXXX 175
DANTGRSKGYGFVRFGD+NER++AMT+MNGV CSSR MRIG ATPRK
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPN 291
Query: 176 XXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNN 235
PE D NTTIFVGGLD +VT+EDL+QPF+++GEIVSVKIPVGKGCGFVQF NR N
Sbjct: 292 GTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPN 351
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYALPPPH 295
AEEAL+KLNGT IGKQTVRLSWGRNPANKQ R +G+ W YYG Y+GYGY +P P
Sbjct: 352 AEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP- 410
Query: 296 DPR 298
DPR
Sbjct: 411 DPR 413
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFAS-VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 137
N + +I+VGDL + ++ L+ +FAS + + KV+ + N G S+GYGFV F +
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 138 RSQAMTQMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGL 195
+ + + NG + +P R+ A+ E++ + +IFVG L
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWAS------------FSTGEKRLENNGPDLSIFVGDL 204
Query: 196 DPNVTEEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTI 248
P+V++ L + FS+ Y + + K+ + KG GFV+F + N +A+ ++NG
Sbjct: 205 SPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKC 264
Query: 249 GKQTVRL 255
+ +R+
Sbjct: 265 SSRAMRI 271
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 411 bits (1056), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/303 (69%), Positives = 234/303 (77%), Gaps = 6/303 (1%)
Query: 1 MDENYLHRCFASTGE--ISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPN 58
MDE YL+ F S E I S+KVIRNK G SEGYGFVEF SH A+KVLQ + G MPN
Sbjct: 114 MDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPN 173
Query: 59 TDQPFRLNWATFSTGEK-TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
TDQPFRLNWA+FSTGEK +N DLSIFVGDLA DV+D+LLHETF+ YPSVKAAKVV
Sbjct: 174 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVL 233
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXX--XXXX 175
DANTGRSKGYGFVRFGD+NER++AMT+MNGV CSSR MRIG ATPRK
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPS 293
Query: 176 XXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNN 235
E D+ NTTIFVGGLD +VT+EDL+QPFS++GEIVSVKIPVGKGCGFVQF NR N
Sbjct: 294 GAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPN 353
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYALPPPH 295
AEEAL+KLNGT IGKQTVRLSWGRNPANKQ R +G+ W YYG Y+GYGY +P P
Sbjct: 354 AEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP- 412
Query: 296 DPR 298
DPR
Sbjct: 413 DPR 415
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 225/293 (76%), Gaps = 16/293 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDE YLH CF+ TGE+SS+KVIRNK T SEGYGFVEF S A AE+VLQNY+G +MPN+D
Sbjct: 119 MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSD 178
Query: 61 QPFRLNWATFSTGEKTS-DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
QPFR+NWA+FSTGEK + +N DLS+FVGDL+ DVTD LLHETF+ YPSVK+AKVV D+
Sbjct: 179 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 238
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX- 178
NTGRSKGYGFVRFGD+NERS+A+T+MNG YCS+R MR+G ATP++
Sbjct: 239 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVIL 298
Query: 179 -------------XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC 225
+ +STN TIFVGG+DP+V +EDLRQPFSQ+GE+VSVKIPVGKGC
Sbjct: 299 AGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGC 358
Query: 226 GFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAY 278
GFVQFA+R +AE+A++ LNGT IGK TVRLSWGR+P NKQ R D G W G Y
Sbjct: 359 GFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGY 410
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
+++VGDL + ++ LH F+ V + KV+ + T +S+GYGFV F + +
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHT-GEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 144 QMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
+G S +P RI A+ + + ++FVG L P+VT+
Sbjct: 168 NYSGSVMPNSDQPFRINWAS------------FSTGEKRAVENGPDLSVFVGDLSPDVTD 215
Query: 202 EDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 254
L + FS +Y + S K+ + KG GFV+F + N AL ++NG + +R
Sbjct: 216 VLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMR 275
Query: 255 L 255
+
Sbjct: 276 V 276
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/300 (64%), Positives = 225/300 (75%), Gaps = 12/300 (4%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDE YLH CF+ T E+SS+KVIRNKQT SEGYGFVEF S + AE+ LQ+++GV MPN +
Sbjct: 130 MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAE 189
Query: 61 QPFRLNWATFSTGEK-TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
QPFRLNWA+FSTGEK S+N DLSIFVGDLA DV+D++L ETFA YPSVK AKVV D+
Sbjct: 190 QPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDS 249
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX- 178
NTGRSKGYGFVRFGD+NERS+AMT+MNG +CSSR MR+G ATP++
Sbjct: 250 NTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTL 309
Query: 179 --------XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQF 230
+ +S N+TIFVGGLD +VTEEDL QPFS +GE+VSVKIPVGKGCGFVQF
Sbjct: 310 AGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQF 369
Query: 231 ANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYA 290
ANR +AEEA+ LNGT IGK TVRLSWGR+P NKQ R D G+ W G Y Y+ GYA
Sbjct: 370 ANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYNN-GYA 427
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 327 bits (839), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/300 (57%), Positives = 207/300 (69%), Gaps = 4/300 (1%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYL F TGE ++ KVIRNKQ G SEGYGF+EF +HATAE+ LQ Y G MP+++
Sbjct: 91 MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSE 150
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q FRLNWA GE+ + ++FVGDLA DVTD +L ETF +VY SVK AKVV D
Sbjct: 151 QAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRT 210
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
TGRSKGYGFVRF D++E+ +AMT+MNG YCSSRPMR G A +K
Sbjct: 211 TGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNS 270
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
ESD TNTTIFVG +D +VTE+DL+ F Q+GE+V VKIP GK CGFVQ+ANR AE+AL
Sbjct: 271 GESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQAL 330
Query: 241 QKLNGTTIGKQTVRLSWGRNPANKQIRMD---FGSPWGGAYYGAPVYDGYGYALPPPHDP 297
LNGT +G Q++RLSWGR+P+NKQ + D +G G Y Y+ YGYA PPP DP
Sbjct: 331 SVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYA-PPPQDP 389
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 320 bits (821), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 172/303 (56%), Positives = 207/303 (68%), Gaps = 10/303 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENY+ FA +GE +S KVIRNK TG SEGYGF+EF SH+ AE+VLQ Y G MP+T+
Sbjct: 71 MDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTE 130
Query: 61 QPFRLNWATFSTGEKT-SDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
Q FRLNWA GEK D +IFVGDLA +VTD +L +TF +VY SVK AKVV D
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG-AATPRKXXXXXXXXXXXXXX 178
TGRSKGYGFVRF D+NE+ +AMT+MNG YCS+RPMRIG AA
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGA 250
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEE 238
++D NTTIFVGGLD NVT+++L+ F Q+GE++ VKIP GK CGFVQ+AN+ +AE
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEH 310
Query: 239 ALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPW-GGAYYGAP--VYDGYGYALPPP- 294
AL LNGT +G Q++RLSWGR+P NKQ + W GG YYG P GYGYA PP
Sbjct: 311 ALSVLNGTQLGGQSIRLSWGRSP-NKQSDQ---AQWNGGGYYGYPPQPQGGYGYAAQPPT 366
Query: 295 HDP 297
DP
Sbjct: 367 QDP 369
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 316 bits (810), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/303 (56%), Positives = 211/303 (69%), Gaps = 16/303 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPN-T 59
MDEN+L+ CFA TGE+ S KVIRNKQTG EGYGF+EF SHA AE+VLQ + +P+
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 60 DQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
DQ FRLNWA+ S+G+K D+ D +IFVGDLAADVTD +L ETF + YPSVK AKVV D
Sbjct: 133 DQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDR 191
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK-XXXXXXXXXXXXXX 178
TGR+KGYGFVRF D++E+ +AMT+MNGV CS+RPMRIG A +K
Sbjct: 192 VTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAG 251
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEE 238
++D NTT+FVGGLD +VT++ L+ FSQYGEIV VKIP GK CGFVQF+ ++ AEE
Sbjct: 252 VTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEE 311
Query: 239 ALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSP----WGGAYYGAPVYDGYGYALPPP 294
AL+ LNG +G TVRLSWGR+P+NKQ G P +GG G + YGY + P
Sbjct: 312 ALRMLNGVQLGGTTVRLSWGRSPSNKQS----GDPSQFYYGGYGQGQ---EQYGYTM--P 362
Query: 295 HDP 297
DP
Sbjct: 363 QDP 365
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/273 (56%), Positives = 188/273 (68%), Gaps = 13/273 (4%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+DENYL CF+ TGE+ S+KVIRNK TG EGYGF+EF SHA AE+ LQ Y G MP T+
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTE 94
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
FRLNWA+F +G+K D D SIFVGDLA DVTD LL ETF Y SV+ AKVV D +
Sbjct: 95 LTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPS 153
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK------------XXXX 168
TGRSKGYGFV+F +++ER++AM +MNG+YCS+RPMRI AATP+K
Sbjct: 154 TGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPS 213
Query: 169 XXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFV 228
PESD T TTI V LD NVTEE+L++ FSQ GE++ VKIP KG G+V
Sbjct: 214 AVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYV 273
Query: 229 QFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 261
QF R +AEEA+Q++ G IG+Q VR+SW +NP
Sbjct: 274 QFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 306
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRN 234
P++ T+++G L V E L FSQ GE+VSVK+ K G GF++F +
Sbjct: 17 PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76
Query: 235 NAEEALQKLNGTTI--GKQTVRLSWG 258
AE LQ NGT + + T RL+W
Sbjct: 77 AAERTLQTYNGTQMPGTELTFRLNWA 102
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/277 (55%), Positives = 188/277 (67%), Gaps = 17/277 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+DENYL CF+ TGE+ S+KVIRNK TG EGYGF+EF SHA AE+ LQ Y G MP T+
Sbjct: 35 VDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTE 94
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
FRLNWA+F +G+K D D SIFVGDLA DVTD LL ETF Y SV+ AKVV D +
Sbjct: 95 LTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPS 153
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK---------------- 164
TGRSKGYGFV+F +++ER++AM +MNG+YCS+RPMRI AATP+K
Sbjct: 154 TGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPV 213
Query: 165 XXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG 224
PESD T TTI V LD NVTEE+L++ FSQ GE++ VKIP KG
Sbjct: 214 TVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKG 273
Query: 225 CGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 261
G+VQF R +AEEA+Q++ G IG+Q VR+SW +NP
Sbjct: 274 YGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRN 234
P++ T+++G L V E L FSQ GE+VSVK+ K G GF++F +
Sbjct: 17 PQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHA 76
Query: 235 NAEEALQKLNGTTI--GKQTVRLSWG 258
AE LQ NGT + + T RL+W
Sbjct: 77 AAERTLQTYNGTQMPGTELTFRLNWA 102
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 139/235 (59%), Positives = 171/235 (72%), Gaps = 3/235 (1%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPN-T 59
MDEN+L+ CFA TGE+ S KVIRNKQTG EGYGF+EF SHA AE+VLQ + +P+
Sbjct: 73 MDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFP 132
Query: 60 DQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
DQ FRLNWA+ S+G+K D+ D +IFVGDLAADVTD +L ETF + YPSVK AKVV D
Sbjct: 133 DQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDR 191
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK-XXXXXXXXXXXXXX 178
TGR+KGYGFVRF D++E+ +AMT+MNGV CS+RPMRIG A +K
Sbjct: 192 VTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAG 251
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR 233
++D NTT+FVGGLD +VT++ L+ FSQYGEIV VKIP GK CGFVQF+ +
Sbjct: 252 VTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 27/195 (13%)
Query: 71 STGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFV 130
S T+D + L ++GDL + ++ L+ FA V +AKV+ + TG+ +GYGF+
Sbjct: 52 SVQPTTADEIRTL--WIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFI 108
Query: 131 RFGDDNERSQAMTQMNGVYCSSRP---MRIGAATPRKXXXXXXXXXXXXXXXXPESDSTN 187
F + + N S P R+ A+ DS +
Sbjct: 109 EFASHAAAERVLQTFNNAPIPSFPDQLFRLNWAS--------------LSSGDKRDDSPD 154
Query: 188 TTIFVGGLDPNVTEEDLRQPF-SQYGEIVSVKIPVG------KGCGFVQFANRNNAEEAL 240
TIFVG L +VT+ L + F + Y + K+ + KG GFV+F++ + A+
Sbjct: 155 YTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 241 QKLNGTTIGKQTVRL 255
++NG + +R+
Sbjct: 215 TEMNGVPCSTRPMRI 229
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/197 (65%), Positives = 146/197 (74%), Gaps = 5/197 (2%)
Query: 1 MDENYLHRCFAS--TGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPN 58
MDE YL+ FAS EI S+KVIRNK GLSEGYGFVEF SH A+KVL+ + G MPN
Sbjct: 112 MDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN 171
Query: 59 TDQPFRLNWATFSTGEK-TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
TDQPFRLNWA+FSTGEK +N DLSIFVGDL+ DV+D+LLHETF+ YPSVKAAKVV
Sbjct: 172 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL 231
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXX--XXXX 175
DANTGRSKGYGFVRFGD+NER++AMT+MNGV CSSR MRIG ATPRK
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPN 291
Query: 176 XXXXXPESDSTNTTIFV 192
PE D NTT+ V
Sbjct: 292 GTLTRPEGDIMNTTVIV 308
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFAS-VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 137
N + +I+VGDL + ++ L+ +FAS + + KV+ + N G S+GYGFV F +
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 138 RSQAMTQMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGL 195
+ + + NG + +P R+ A+ E++ + +IFVG L
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWAS------------FSTGEKRLENNGPDLSIFVGDL 204
Query: 196 DPNVTEEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTI 248
P+V++ L + FS+ Y + + K+ + KG GFV+F + N +A+ ++NG
Sbjct: 205 SPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKC 264
Query: 249 GKQTVRL 255
+ +R+
Sbjct: 265 SSRAMRI 271
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 138/279 (49%), Gaps = 29/279 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L FASTG I S K+IR ++ YGFV ++ A + G + QP
Sbjct: 76 EILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTLNGRHI--FGQP 129
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA ++TG++ D S +IFVGDL+ +VTD+ L ++F S + S A+V++D TG
Sbjct: 130 MKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDAALFDSF-SAFNSCSDARVMWDQKTG 186
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP-----------------RKX 165
RS+G+GFV F + + A+ +MNG + SSR +R AT
Sbjct: 187 RSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELT 246
Query: 166 XXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGE--IVSVKIPVGK 223
PE++ TT++VG L P VT+ DL + F G I V++ K
Sbjct: 247 NGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK 306
Query: 224 GCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 261
G GFV++ + A A+Q N + + +R SWG P
Sbjct: 307 GFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 345
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++ G++ VT+ LL E FAS P +++ K++ + YGFV + D S A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGP-IESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+NG + +PM++ A E S++ IFVG L P VT+
Sbjct: 119 TLNGRHIFGQPMKVNWA---------------YATGQREDTSSHFNIFVGDLSPEVTDAA 163
Query: 204 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS + ++ +G GFV F N+ +A+ A+ ++NG + + +R +W
Sbjct: 164 LFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNW 223
Query: 258 G 258
Sbjct: 224 A 224
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 141/279 (50%), Gaps = 29/279 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L F STG + S K+IR ++ YGFV ++ +A + + G + QP
Sbjct: 72 EPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSLNGRHL--FGQP 125
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA ++TG++ D S +IFVGDL+ +VTD+ L+++F SV+ S A+V++D TG
Sbjct: 126 IKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDATLYQSF-SVFSSCSDARVMWDQKTG 182
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP-----------------RKX 165
RS+G+GFV F + + A+ +MNG + SSR +R AT
Sbjct: 183 RSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELT 242
Query: 166 XXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGE--IVSVKIPVGK 223
PE++S TT++VG L P VT+ DL + F G I V++ K
Sbjct: 243 TGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK 302
Query: 224 GCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 261
G GFV++ A A+Q N + + ++ SWG P
Sbjct: 303 GFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKP 341
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 26/181 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ VT+ LL E F S P V+++K++ + YGFV + D + A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGP-VESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+NG + +P+++ A E S++ IFVG L P VT+
Sbjct: 115 SLNGRHLFGQPIKVNWA---------------YATGQREDTSSHFNIFVGDLSPEVTDAT 159
Query: 204 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L Q FS + ++ +G GFV F N+ +A+ A+ ++NG + + +R +W
Sbjct: 160 LYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNW 219
Query: 258 G 258
Sbjct: 220 A 220
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 138/282 (48%), Gaps = 31/282 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L FASTG I S K+IR ++ YGFV ++ A + G + QP
Sbjct: 76 EILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIMTLNGRHI--FGQP 129
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFA---SVYPSVKAAKVVFDA 119
++NWA ++TG++ D S +IFVGDL+ +VTD+ L ++F+ S + A+V++D
Sbjct: 130 MKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQ 187
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP----------------- 162
TGRS+G+GFV F + + A+ +MNG + SSR +R AT
Sbjct: 188 KTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVV 247
Query: 163 RKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGE--IVSVKIP 220
PE++ TT++VG L P VT+ DL + F G I V++
Sbjct: 248 ELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ 307
Query: 221 VGKGCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 261
KG GFV++ + A A+Q N + + +R SWG P
Sbjct: 308 RDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 349
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 30/185 (16%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++ G++ VT+ LL E FAS P +++ K++ + YGFV + D S A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGP-IESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+NG + +PM++ A E S++ IFVG L P VT+
Sbjct: 119 TLNGRHIFGQPMKVNWA---------------YATGQREDTSSHFNIFVGDLSPEVTDAA 163
Query: 204 LRQPFSQYGEIVSV----------KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 253
L FS + S K +G GFV F N+ +A+ A+ ++NG + + +
Sbjct: 164 LFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Query: 254 RLSWG 258
R +W
Sbjct: 224 RCNWA 228
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 26/276 (9%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L FA TG + S K+IR +++ YGFV ++ +A + + G + QP
Sbjct: 67 EPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSLNGRHL--FGQP 120
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA +++G++ D S +IFVGDL+ +VTD++L F SVYP+ A+V++D TG
Sbjct: 121 IKVNWA-YASGQR-EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPTCSDARVMWDQKTG 177
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX---- 178
RS+G+GFV F + + A+ ++ G + SR +R AT
Sbjct: 178 RSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELT 237
Query: 179 ----------XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGE--IVSVKIPVGKGCG 226
PE+++ TT++VG L P V++ DL + F G I V++ KG G
Sbjct: 238 SGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG 297
Query: 227 FVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 261
FV+++ A A+Q N + + + ++ SWG P
Sbjct: 298 FVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 333
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ VT+ LL E FA P V++ K++ + YGFV + D A+
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGP-VESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+NG + +P+++ A E S++ IFVG L P VT+
Sbjct: 110 SLNGRHLFGQPIKVNWA---------------YASGQREDTSSHFNIFVGDLSPEVTDAM 154
Query: 204 LRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS Y ++ +G GFV F N+ +A+ A+ ++ G +G + +R +W
Sbjct: 155 LFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNW 214
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 141/279 (50%), Gaps = 29/279 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L FA TG + S K+IR +++ YGFV ++ +A + + G + QP
Sbjct: 67 EPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSLNGRHL--FGQP 120
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA +++G++ D S +IFVGDL+ +VTD++L F SVYP+ A+V++D TG
Sbjct: 121 IKVNWA-YASGQR-EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPTCSDARVMWDQKTG 177
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX---- 178
RS+G+GFV F + + A+ ++ G + SR +R AT
Sbjct: 178 RSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELT 237
Query: 179 -------------XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGE--IVSVKIPVGK 223
PE+++ TT++VG L P V++ DL + F G I V++ K
Sbjct: 238 SGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDK 297
Query: 224 GCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 261
G GFV+++ A A+Q N + + + ++ SWG P
Sbjct: 298 GFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 336
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ VT+ LL E FA P V++ K++ + YGFV + D A+
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGP-VESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+NG + +P+++ A E S++ IFVG L P VT+
Sbjct: 110 SLNGRHLFGQPIKVNWA---------------YASGQREDTSSHFNIFVGDLSPEVTDAM 154
Query: 204 LRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS Y ++ +G GFV F N+ +A+ A+ ++ G +G + +R +W
Sbjct: 155 LFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNW 214
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 139/273 (50%), Gaps = 9/273 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F+S G I S KV + +G S+GYGFV++ + +A+K ++ G+L+ N
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLL-NDK 192
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q + + + T++ +++V +LA TD L F Y + +A V+ D
Sbjct: 193 QVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGE-YGKITSAVVMKDGE 251
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G+SKG+GFV F + ++ ++A+ +NG + +G A +
Sbjct: 252 -GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 310
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI---PVG--KGCGFVQFANRNN 235
++ ++V LDP++++E L++ FS +G + S K+ P G KG GFV FA
Sbjct: 311 AADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEE 370
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A EA+ +L+G I + + ++ + ++++R+
Sbjct: 371 ATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL 403
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 38/255 (14%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPNTD 60
++ L F G + +++V R+ T S GYG+V F + A + +Q NY +P
Sbjct: 49 DSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNY----IPLYG 104
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+P R+ ++ + S +IF+ +L + LH+TF+S + ++ + KV D+
Sbjct: 105 KPIRVMYSHRDPSVRRS---GAGNIFIKNLDESIDHKALHDTFSS-FGNIVSCKVAVDS- 159
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
+G+SKGYGFV++ ++ +A+ ++NG+ + + + +G R+
Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ---------------- 203
Query: 181 PESDSTN-----TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQF 230
E DST T ++V L + T++DL+ F +YG+I S + KG GFV F
Sbjct: 204 -ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNF 262
Query: 231 ANRNNAEEALQKLNG 245
N ++A A++ LNG
Sbjct: 263 ENADDAARAVESLNG 277
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 22/191 (11%)
Query: 68 ATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGY 127
A ++G T+ + S++VGDL +VTDS L + F + +V +V D T RS GY
Sbjct: 21 APATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQM-GTVVTVRVCRDLVTRRSLGY 79
Query: 128 GFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTN 187
G+V F + + ++A+ ++N + +P+R+ S + N
Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRV--------------MYSHRDPSVRRSGAGN 125
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQK 242
IF+ LD ++ + L FS +G IVS K+ V KG GFVQ+AN +A++A++K
Sbjct: 126 --IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEK 183
Query: 243 LNGTTIGKQTV 253
LNG + + V
Sbjct: 184 LNGMLLNDKQV 194
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 187 NTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEAL 240
NT+++VG LD NVT+ L F Q G +V+V++ G G+V F N +A A+
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 241 QKLNGTTIGKQTVRLSWG-RNPA 262
Q+LN + + +R+ + R+P+
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPS 117
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 9/273 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F+ G I S KV + G S GYGFV+F + +A+ ++ G ++ N
Sbjct: 145 VDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVL-NDK 202
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q F + E +D + +++V +L+ TD L TF Y S+ +A V+ D +
Sbjct: 203 QIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQ-YGSISSAVVMRDGD 261
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G+S+ +GFV F + + ++A+ +NG + +G A +
Sbjct: 262 -GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSD 320
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI---PVG--KGCGFVQFANRNN 235
+ ++V LD VT+E LR+ F+++G I S K+ P G KG GFV F+ +
Sbjct: 321 GGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASE 380
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A L ++NG +G + + ++ + ++ ++
Sbjct: 381 ASRVLNEMNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPNTD 60
++ L+ F ++ S++V R+ T S GYG+V + + AEK +Q NY+ +
Sbjct: 59 DSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYL----NG 114
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+ R+ T+S+ + ++ ++FV +L V + LHE F+ ++ + KV D +
Sbjct: 115 KMIRI---TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGC-GTIVSCKVATD-H 169
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G+S+GYGFV+F ++ A+ ++NG + + + +G ++
Sbjct: 170 MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKF----- 224
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVS-VKIPVGKG---C-GFVQFANRNN 235
T ++V L T+++L+ F QYG I S V + G G C GFV F N +
Sbjct: 225 -------TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPED 277
Query: 236 AEEALQKLNG 245
A A++ LNG
Sbjct: 278 AARAVEALNG 287
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VGDL +VTDS L++ F V V + +V DA T S GYG+V + + ++ +AM
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVC-QVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++N Y + + +RI ++ +FV LD +V +
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG----------------NLFVKNLDKSVDNKT 149
Query: 204 LRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 253
L + FS G IVS K+ +G GFVQF ++A+ A++KLNG + + +
Sbjct: 150 LHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQI 204
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 17/277 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F++ G I S KV + +G S+GYGFV++ + A+ + G+L+ N
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLL-NDK 201
Query: 61 Q----PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVV 116
Q PF +GEK V +++V +L+ ++D L++ F V + V+
Sbjct: 202 QVYVGPFVHKLQRDPSGEK----VKFTNVYVKNLSESLSDEELNKVFGEF--GVTTSCVI 255
Query: 117 FDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 176
G+SKG+GFV F + ++ ++A+ +NG + +G A +
Sbjct: 256 MRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Query: 177 XXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFA 231
S + ++V LD +VT++ LR+ F+ +G I S K+ V +G GFV F+
Sbjct: 316 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFS 375
Query: 232 NRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A A+ ++NG I + + ++ + +++ R+
Sbjct: 376 TPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 26/251 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
++ L F G++ S++V R+ T S GYG+V + + A + L M +
Sbjct: 58 DSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN--FMALNGRA 115
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
R+ ++ + S V + IF+ +L + LHETF++ P + + KV D +G
Sbjct: 116 IRVMYSVRDPSLRKS-GVGN--IFIKNLDKSIDHKALHETFSAFGP-ILSCKVAVDP-SG 170
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE 182
+SKGYGFV++ D A+ ++NG+ + + + +G + P
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHK-------------LQRDPS 217
Query: 183 SDSTN-TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNA 236
+ T ++V L ++++E+L + F ++G S I KG GFV F N ++A
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
Query: 237 EEALQKLNGTT 247
A+ LNG T
Sbjct: 278 ARAVDALNGKT 288
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 29/195 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VGDL A VTDS L E F V + +V D T RS GYG+V + + S+A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAG-QVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNT-TIFVGGLDPNVTEE 202
++N + + R +R+ P + IF+ LD ++ +
Sbjct: 105 ELNFMALNGRAIRV-----------------MYSVRDPSLRKSGVGNIFIKNLDKSIDHK 147
Query: 203 DLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL-- 255
L + FS +G I+S K+ V KG GFVQ+ A+ A+ KLNG + + V +
Sbjct: 148 ALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Query: 256 ---SWGRNPANKQIR 267
R+P+ ++++
Sbjct: 208 FVHKLQRDPSGEKVK 222
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 17/277 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F++ G I S KV + +G S+GYGFV++ + A+ + G+L+ N
Sbjct: 144 IDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLL-NDK 201
Query: 61 Q----PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVV 116
Q PF +GEK V +++V +L+ ++D L++ F V + V+
Sbjct: 202 QVYVGPFVHKLQRDPSGEK----VKFTNVYVKNLSESLSDEELNKVFGEF--GVTTSCVI 255
Query: 117 FDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 176
G+SKG+GFV F + ++ ++A+ +NG + +G A +
Sbjct: 256 MRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315
Query: 177 XXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFA 231
S + ++V LD +VT++ LR+ F+ +G I S K+ V +G GFV F+
Sbjct: 316 SLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFS 375
Query: 232 NRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A A+ ++NG I + + ++ + +++ R+
Sbjct: 376 TPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 26/251 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
++ L F G++ S++V R+ T S GYG+V + + A + L M +
Sbjct: 58 DSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN--FMALNGRA 115
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
R+ ++ + S V + IF+ +L + LHETF++ P + + KV D +G
Sbjct: 116 IRVMYSVRDPSLRKS-GVGN--IFIKNLDKSIDHKALHETFSAFGP-ILSCKVAVDP-SG 170
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE 182
+SKGYGFV++ D A+ ++NG+ + + + +G + P
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHK-------------LQRDPS 217
Query: 183 SDSTN-TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNA 236
+ T ++V L ++++E+L + F ++G S I KG GFV F N ++A
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
Query: 237 EEALQKLNGTT 247
A+ LNG T
Sbjct: 278 ARAVDALNGKT 288
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 29/195 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VGDL A VTDS L E F V + +V D T RS GYG+V + + S+A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAG-QVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNT-TIFVGGLDPNVTEE 202
++N + + R +R+ P + IF+ LD ++ +
Sbjct: 105 ELNFMALNGRAIRV-----------------MYSVRDPSLRKSGVGNIFIKNLDKSIDHK 147
Query: 203 DLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL-- 255
L + FS +G I+S K+ V KG GFVQ+ A+ A+ KLNG + + V +
Sbjct: 148 ALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Query: 256 ---SWGRNPANKQIR 267
R+P+ ++++
Sbjct: 208 FVHKLQRDPSGEKVK 222
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 11/275 (4%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L+ F+S G I S KV + G S+GYGFV+F TA+ + G+L+ N
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL-NDK 214
Query: 61 QPFRLNWATFSTGEKTSDNV--SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
Q F ++ ++ S +++V +L ++TD L +TF Y + +A VV
Sbjct: 215 QVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGK-YGDISSA-VVMK 272
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
+G S+ +GFV F + A+ +MNG+ + +G A +
Sbjct: 273 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANR 233
+ +++ LD +V +E L++ FS+YG + S K+ + +G GFV ++N
Sbjct: 333 ISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNP 392
Query: 234 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A A++++NG IG++ + ++ + +Q +
Sbjct: 393 EEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL 427
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 134/272 (49%), Gaps = 27/272 (9%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPN 58
++E++L F + +++V R+ T S GY +V F + A + ++ NYA P
Sbjct: 70 VNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYA----PI 124
Query: 59 TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
D+P R+ + + S + +F+ +L A + + L+ETF+S + ++ + KV D
Sbjct: 125 RDRPIRIMLSNRDPSTRLSGKGN---VFIKNLDASIDNKALYETFSS-FGTILSCKVAMD 180
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
GRSKGYGFV+F + A+ ++NG+ + + + +G R+
Sbjct: 181 V-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV---- 235
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANR 233
+ T ++V L +T+++L++ F +YG+I S + + GFV F +
Sbjct: 236 ------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 289
Query: 234 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A A++K+NG ++G+ + + + ++++
Sbjct: 290 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 321
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 11/275 (4%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L+ F+S G I S KV + G S+GYGFV+F TA+ + G+L+ N
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLL-NDK 214
Query: 61 QPFRLNWATFSTGEKTSDNV--SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
Q F ++ ++ S +++V +L ++TD L +TF Y + +A VV
Sbjct: 215 QVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGK-YGDISSA-VVMK 272
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
+G S+ +GFV F + A+ +MNG+ + +G A +
Sbjct: 273 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANR 233
+ +++ LD +V +E L++ FS+YG + S K+ + +G GFV ++N
Sbjct: 333 ISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNP 392
Query: 234 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A A++++NG IG++ + ++ + +Q +
Sbjct: 393 EEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL 427
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 134/272 (49%), Gaps = 27/272 (9%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPN 58
++E++L F + +++V R+ T S GY +V F + A + ++ NYA P
Sbjct: 70 VNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYA----PI 124
Query: 59 TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
D+P R+ + + S + +F+ +L A + + L+ETF+S + ++ + KV D
Sbjct: 125 RDRPIRIMLSNRDPSTRLSGKGN---VFIKNLDASIDNKALYETFSS-FGTILSCKVAMD 180
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
GRSKGYGFV+F + A+ ++NG+ + + + +G R+
Sbjct: 181 V-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV---- 235
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANR 233
+ T ++V L +T+++L++ F +YG+I S + + GFV F +
Sbjct: 236 ------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 289
Query: 234 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A A++K+NG ++G+ + + + ++++
Sbjct: 290 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDRE 321
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 131/277 (47%), Gaps = 15/277 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L F+S G I S KV + TG S+GYGFV+F +A+ + G+LM N
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLM-NDK 204
Query: 61 QPFRLNWATFSTGEKTSDNVSDL----SIFVGDLAADVTDSLLHETFASVYPSVKAAKVV 116
Q F ++ E+ D + +++V +L ++ + L +TF V ++ VV
Sbjct: 205 QVFVGHF--IRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF--GVISSAVV 260
Query: 117 FDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 176
+G S+ +GFV F + A+ +MNG+ + +G A +
Sbjct: 261 MRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Query: 177 XXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI---PVG--KGCGFVQFA 231
S +++ LD +V +E L++ FS+YG + S K+ P G +G GFV ++
Sbjct: 321 ERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 232 NRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
N A AL ++NG IG++ + ++ + +++ +
Sbjct: 381 NPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 27/270 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPNTD 60
E +L F + S++V R+ Q S GY ++ F + A + ++ NY P D
Sbjct: 62 EAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT----PLFD 116
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+P R+ + + S + IF+ +L A + + L ETF+S + ++ + KV D
Sbjct: 117 RPIRIMLSNRDPSTRLSGKGN---IFIKNLDASIDNKALFETFSS-FGTILSCKVAMDV- 171
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
TGRSKGYGFV+F + A+ ++NG+ + + + +G R+
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQ--------ERARDENT 223
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG----C-GFVQFANRNN 235
P TN ++V L + E++LR+ F ++G I S + + C GFV F
Sbjct: 224 PTPRFTN--VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A A++K+NG ++G + + + + ++
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSERE 311
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 130/282 (46%), Gaps = 17/282 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L F++ G++ S KV R+ +G+S+GYGFV+FYS + + G L+ N
Sbjct: 42 IDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQ- 99
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
++ F + + + +++V +L TD+ L F + + +A V+ D
Sbjct: 100 ---HIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGE-FGEITSAVVMKDGE 155
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G+S+ +GFV F A+ +MNGV + + +G A RK
Sbjct: 156 -GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ-RKTNRTEDLKAKFELEKI 213
Query: 181 PESDSTN--TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANR 233
T ++V LD +V L + FS++G I S K+ V KG GFV+F+
Sbjct: 214 IRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTS 273
Query: 234 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM--DFGSP 273
A +A+ K+NG +G + + +S + ++ + F +P
Sbjct: 274 EEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNP 315
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV +L + + L + F S + V + KV DA +G SKGYGFV+F D A
Sbjct: 32 NVFVKNLDESIDNKQLCDMF-SAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACN 89
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
NG ++ + + R + T ++V L T+ D
Sbjct: 90 FHNGTLIRNQHIHVCPFVSRGQW---------------DKSRVFTNVYVKNLVETATDAD 134
Query: 204 LRQPFSQYGEIVS-VKIPVGKG----CGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 258
L++ F ++GEI S V + G+G GFV F A A++K+NG + ++ + +
Sbjct: 135 LKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Query: 259 RNPANK 264
+ N+
Sbjct: 195 QRKTNR 200
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 17/251 (6%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 65
L R F G I S KV+ ++ G S+G+GFV+F + +A G ++ +L
Sbjct: 128 LERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGK----KL 181
Query: 66 NWATFSTGEK---TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
A F ++ + N +++V +L VTD LH F S Y +V + V+ D G
Sbjct: 182 FVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-SQYGTVSSVVVMRDG-MG 239
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE 182
RS+G+GFV F + +AM + G+ S+ + +G A +K +
Sbjct: 240 RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKAL-KKDERREMLKQKFSDNFIAK 298
Query: 183 SDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAE 237
+ + ++V L ++ E LR+ F YG+IVS K+ KG GFV F+N ++
Sbjct: 299 PNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESK 358
Query: 238 EALQKLNGTTI 248
+A + LNG +
Sbjct: 359 QAKRYLNGFLV 369
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 109/245 (44%), Gaps = 26/245 (10%)
Query: 16 ISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPNTDQPFRLNWATFSTG 73
+ S+ + RN TG S Y ++ F S +A + N++ + + R+ W+
Sbjct: 47 VVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDL----KGKAMRIMWSQRDLA 102
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 133
+ +++V +L + +T S L F + S+ + KVV G+SKG+GFV+F
Sbjct: 103 YRRRTRTGFANLYVKNLDSSITSSCLERMFCP-FGSILSCKVV--EENGQSKGFGFVQFD 159
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVG 193
+ A + ++G + + + + DSTN ++V
Sbjct: 160 TEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAG----------NQDSTN--VYVK 207
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTI 248
L VT++ L FSQYG + SV + +G GFV F N NA++A++ L G +
Sbjct: 208 NLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQL 267
Query: 249 GKQTV 253
G + +
Sbjct: 268 GSKKL 272
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM------ 56
++ LH F+ G +SS+ V+R+ G S G+GFV F + A+K +++ G+ +
Sbjct: 215 DDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLF 273
Query: 57 ----PNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
D+ + FS N+ +++V +L+ + ++ L E F Y + +
Sbjct: 274 VGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFG-CYGQIVS 332
Query: 113 AKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 160
AKV+ N GRSKG+GFV F + E QA +NG +P+ + A
Sbjct: 333 AKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 129/268 (48%), Gaps = 26/268 (9%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L+ FA ++S+++ ++ +G S YG+ F S A ++ L+ +
Sbjct: 37 EGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLL--NGKM 94
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
R+ W+ + + + V + +FV +L VT+++L + F + ++ + KV G
Sbjct: 95 IRVMWSVRAPDAR-RNGVGN--VFVKNLPESVTNAVLQDMFKK-FGNIVSCKVA-TLEDG 149
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE 182
+S+GYGFV+F ++ A+ +N + + + +G + PE
Sbjct: 150 KSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK------------TDRVKPE 197
Query: 183 SDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAE 237
TN +++ LD +V+E+ LR+ F+++G+IVS+ I + +G FV F N +A
Sbjct: 198 EKYTN--LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
Query: 238 EALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A + +NGT G + + + + A ++
Sbjct: 256 RAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 35/285 (12%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN-----------YAGV 54
L F G I S KV + G S GYGFV+F A +Q Y G
Sbjct: 128 LQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGK 186
Query: 55 LMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAK 114
M TD+ EK ++ +++ +L ADV++ LL E FA + + +
Sbjct: 187 FMKKTDR--------VKPEEKYTN------LYMKNLDADVSEDLLREKFAE-FGKIVSLA 231
Query: 115 VVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXX 174
+ D N +GY FV F + + +A +NG S+ + +G A +
Sbjct: 232 IAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQF 290
Query: 175 XXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQ 229
+ + + I+V ++ VTEE+LR+ FSQ G I S K+ KG GFV
Sbjct: 291 KEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVC 350
Query: 230 FANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANK--QIRMDFGS 272
F+ A +A++ +G + + ++ + ++ Q+++ FG+
Sbjct: 351 FSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGN 395
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VGDL VT+ +L++ FA + S+ + ++ DA++GRS YG+ F + + A+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAE-FKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNT-TIFVGGLDPNVTEE 202
+ N + + +R+ + P++ +FV L +VT
Sbjct: 84 KKNNSLLNGKMIRVMWSV-----------------RAPDARRNGVGNVFVKNLPESVTNA 126
Query: 203 DLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 253
L+ F ++G IVS K+ +G GFVQF + A A+Q LN T + + +
Sbjct: 127 VLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 6/160 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+ E L F G + ++ V +++ T L + YGF+E+ S A+ ++ + +
Sbjct: 36 LSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKL--HG 93
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+P R+N A S +K+ D ++L F+G+L DV + LL++TF++ K++ D +
Sbjct: 94 KPIRVNKA--SQDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPD 149
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 160
TG S+G+GF+ + A+ M G Y S+R + + A
Sbjct: 150 TGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 25/193 (12%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
G+ +++ D +++VG L A +++ LL E F P V V D T + YGF+ +
Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNV-YVPKDRVTNLHQNYGFIEY 73
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFV 192
+ + A+ +N + +P+R+ A+ K +S +F+
Sbjct: 74 RSEEDADYAIKVLNMIKLHGKPIRVNKASQDK-----------------KSLDVGANLFI 116
Query: 193 GGLDPNVTEEDLRQPFSQYGEIVS----VKIP---VGKGCGFVQFANRNNAEEALQKLNG 245
G LDP+V E+ L FS +G I S ++ P +G GF+ + + ++ A++ + G
Sbjct: 117 GNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTG 176
Query: 246 TTIGKQTVRLSWG 258
+ + + +S+
Sbjct: 177 QYLSNRQITVSYA 189
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 16/191 (8%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
+DL +FVG+L +V + L + F S +V+ +V++D TGRS+G+GFV +E
Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 141 AMTQMNGVYCSSRPMRIGAATP---------RKXXXXXXXXXXXXXXXXPESDSTNTTIF 191
A Q NG RP+R+ A P R + ++
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVY 207
Query: 192 VGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNG 245
VG L V + L FS+ G++V ++ KG GFV + + + A++ L+G
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Query: 246 TTIGKQTVRLS 256
+ + +R+S
Sbjct: 268 ADLDGRQIRVS 278
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L + F S G + ++VI +K TG S G+GFV S + E Q + G +
Sbjct: 102 VDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYEL--DG 159
Query: 61 QPFRLNWAT--------FSTGEKTSDNVSDLS--------------IFVGDLAADVTDSL 98
+P R+N FS G ++S S ++VG+L+ V D
Sbjct: 160 RPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMA 219
Query: 99 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 158
L F S V A+V++D ++GRSKG+GFV + E A+ ++G R +R+
Sbjct: 220 LESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278
Query: 159 AATPR 163
A R
Sbjct: 279 EAEAR 283
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 23/175 (13%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQ---- 61
L + F G + ++++ +K T S G+GFV S A++ +Q M N+ Q
Sbjct: 132 LSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQ------MFNSSQIGGR 185
Query: 62 PFRLNWATFSTG-------EKTSDNV-----SDLSIFVGDLAADVTDSLLHETFASVYPS 109
++N+ G K DN S ++ G+L ++T L + F P
Sbjct: 186 TVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGD-QPG 244
Query: 110 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
V AKV+++ NTGRS+G+GF+ F A+ MNGV R +R+ A+ R+
Sbjct: 245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
++VG+L +T S L + F +V ++V+D T RS+G+GFV G E +AM
Sbjct: 118 LYVGNLPYTITSSELSQIFGEA-GTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
N R +++ + DS + ++ G L N+T + L
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHK-VYAGNLGWNLTSQGL 235
Query: 205 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 258
+ F ++ K+ +G GF+ F + N + AL +NG + + +RL+
Sbjct: 236 KDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr1:2260562-2262795 REVERSE
LENGTH=481
Length = 481
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 184 DSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKL 243
D + T++VGGL+ + E+D+R F +GEI S++I K C FV + +R AE+A Q+L
Sbjct: 224 DESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQEL 283
Query: 244 -NGTTIGKQTVRLSWGR 259
N I Q ++L+WGR
Sbjct: 284 SNRLVINGQRLKLTWGR 300
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG ++ + + L E F + Y V A V+ D TGR +G+GFV F D + + + +
Sbjct: 8 LFVGGISWETDEDKLREHFTN-YGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--IFVGGLDPNVTEE 202
+ + +R + + A R+ D+ N T IFVGGL P +T+E
Sbjct: 67 KHSI--DTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 203 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQ 251
+ RQ F YG + V I +G GFV F + + + L K GKQ
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 179
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGV------- 54
DE+ L F + GE+S V+R+K TG G+GFV F + ++VLQ +
Sbjct: 18 DEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDV 77
Query: 55 --LMPNTDQPFRLNWATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLHETFASVYPSV 110
M +Q +T + + + + IFVG L +TD + F VY V
Sbjct: 78 KRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYF-EVYGPV 136
Query: 111 KAAKVVFDANTGRSKGYGFVRF 132
+++D T R +G+GFV F
Sbjct: 137 TDVAIMYDQATNRPRGFGFVSF 158
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
+D +F GDL +V D +L + FA +P+ AKV+ D TG++KGYGFV F + + +
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFAR-FPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 141 AMTQMNGVYCSSRPMRI 157
A+ +MNG Y +RP+++
Sbjct: 194 ALKEMNGKYVGNRPIKL 210
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 8 RCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNW 67
+ F GEI+ ++++++TG G+GFV + + +KV+Q+ ++ +
Sbjct: 60 KHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEI-----K 114
Query: 68 ATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGY 127
T G +S++ IFVG + + V D E F + +K +++ D +TGRS+G+
Sbjct: 115 RTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ-FGELKEHQIMRDHSTGRSRGF 173
Query: 128 GFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
GFV + ++ + + N + S + I A P+K
Sbjct: 174 GFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
IFVG LA + T + + F Y + + ++ D TG+ +G+GFV + D + + + Q
Sbjct: 44 IFVGGLARETTSAEFLKHFGK-YGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-Q 101
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
N + + + I PR +D IFVGG+ +V +++
Sbjct: 102 DNHIIIG-KQVEIKRTIPRGSMSS--------------NDFKTKKIFVGGIPSSVDDDEF 146
Query: 205 RQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
++ F Q+GE+ +I +G GFV + + + + L K N + V +
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
>AT2G29580.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:12652011-12654158 FORWARD
LENGTH=483
Length = 483
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 184 DSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKL 243
D + T++VGGL+ V E+D+R F +GEI S++I K C FV + R AE+A ++L
Sbjct: 224 DQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEEL 283
Query: 244 -NGTTIGKQTVRLSWGR 259
N + Q ++L+WGR
Sbjct: 284 SNRLVVNGQRLKLTWGR 300
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 65
++ F GEI+ ++R++ TG G+GF+ F + +KV+++ + N Q
Sbjct: 35 FNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED---THVINGKQVEIK 91
Query: 66 NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSK 125
G S ++ IFVG + + VT+ L + FA Y +V +V+ D T RS+
Sbjct: 92 RTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK-YGNVVEHQVIRDHETNRSR 150
Query: 126 GYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
G+GFV F + + +++ N + + + I A P+K
Sbjct: 151 GFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKK 189
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 21/187 (11%)
Query: 75 KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGD 134
++ D S IF+G L D T+++ ++ F Y + + ++ D +TG+ +G+GF+ F D
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGK-YGEITDSVIMRDRHTGQPRGFGFITFAD 69
Query: 135 DNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGG 194
+ + + + + + + I P+ D IFVGG
Sbjct: 70 PSVVDKVIEDTH--VINGKQVEIKRTIPKGAGGNQ------------SKDIKTKKIFVGG 115
Query: 195 LDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTI 248
+ VTE++L+ F++YG +V ++ +G GFV F + +E L K N +
Sbjct: 116 IPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM 175
Query: 249 GKQTVRL 255
V +
Sbjct: 176 ADTQVEI 182
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 113/307 (36%), Gaps = 64/307 (20%)
Query: 10 FASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM------------- 56
F GE+ SI+++ N + G GYGFVEF S +K L+N G +
Sbjct: 205 FNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAKTA 263
Query: 57 -----PNTDQPFRLNWATFSTGEKTSDN-------------VSDLSIFVGDLAADVTDSL 98
P + +L + + E + V ++FV L+ +
Sbjct: 264 PYPPGPKYNLVEKLCYEDYLRRESLPIDEDETPPEFVEAVGVRKKTLFVAHLSRKTEITH 323
Query: 99 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRP--MR 156
+ F V V ++ +TG+ G FV FG NE A+ NG Y + +
Sbjct: 324 IINFFKDVGEVVHVRLIL--NHTGKHVGCAFVEFGSANEAKMALETKNGEYLNDCKIFLE 381
Query: 157 IGAATP-------------------RKXXXXXXXXXXXXXXXXP----ESDSTNTTIFVG 193
+ P R+ P E T+FV
Sbjct: 382 VAKMVPYPPPKYCIHHKVWYEDYLRRESLLIEENETEEGLDDTPALVEEFAVRKKTLFVA 441
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIPVGK-----GCGFVQFANRNNAEEALQKLNGTTI 248
L P + + F E+V V++ V GCGFV+FA+ N A++ALQK+NG +
Sbjct: 442 NLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMNGENL 501
Query: 249 GKQTVRL 255
+ + L
Sbjct: 502 RSREIFL 508
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV---GK--GCGFVQFANRNNA 236
E+ T+FV L ++ F + GE+V V++ V GK GCGFV+FA+ N A
Sbjct: 62 EAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEA 121
Query: 237 EEALQKLNGTTIGKQTVRLSWGRNPA 262
EEALQK NG + + L A
Sbjct: 122 EEALQKKNGECLDNNKIFLDVANKKA 147
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYA-----GVLM---- 56
L F G + +VI N++T S G+GFV S AE ++ + G L+
Sbjct: 166 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNK 225
Query: 57 --PNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAK 114
P +P R ++VG+L DV + L + F S + V A+
Sbjct: 226 AAPRGSRPERAPRVYEPA----------FRVYVGNLPWDVDNGRLEQLF-SEHGKVVEAR 274
Query: 115 VVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
VV+D TGRS+G+GFV D +E ++A++ ++G R +R+ A R
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG+LA DV L F +V+ A+V+++ T +S+G+GFV +E A+ +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQA-GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
N + R + + A PR P ++VG L +V L
Sbjct: 211 FNRYDLNGRLLTVNKAAPR----------GSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 205 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
Q FS++G++V ++ +G GFV ++ + EA+ L+G + + +R+
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L F G + +VI N+ T S G+GFV + AEK ++ +
Sbjct: 124 VDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF--------- 174
Query: 61 QPFRLNWATFSTGE--------KTSDNVSD--LSIFVGDLAADVTDSLLHETFASVYPSV 110
F +N + + V D I+VG+L DV L F S + V
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKV 233
Query: 111 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
A+VV D TGRS+G+GFV+ ++NE + A+ ++G R +++ A R
Sbjct: 234 VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG+L DV L F +V+ ++V+++ +T +S+G+GFV E +A+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQA-GTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
N + R + + A PR P I+VG L +V L
Sbjct: 174 FNSFEVNGRRLTVNRAAPR----------GSRPERQPRVYDAAFRIYVGNLPWDVDSGRL 223
Query: 205 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
+ FS++G++V ++ +G GFVQ +N N A+ L+G + + +++
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L E F+S + V A ++ D TGR++G+GFV F D +T+
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ + R + A PR P IFVGGL +VTE D
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 243
+ F Q+G V + +G GF+ + ++EEA++K+
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVEKV 165
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL---QNYAGVL--- 55
+E L F+S GE+ +++++ TG + G+GFV F A AE V+ N G L
Sbjct: 18 NEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEA 77
Query: 56 ---MPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ + S IFVG L + VT+S +T+ + +
Sbjct: 78 KKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF-KTYFEQFGTTTD 136
Query: 113 AKVVFDANTGRSKGYGFVRF 132
V++D NT R +G+GF+ +
Sbjct: 137 VVVMYDHNTQRPRGFGFITY 156
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L E F+S + V A ++ D TGR++G+GFV F D +T+
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ + R + A PR P IFVGGL +VTE D
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF 124
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 243
+ F Q+G V + +G GF+ + ++EEA++K+
Sbjct: 125 KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY----DSEEAVEKV 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL---QNYAGVL--- 55
+E L F+S GE+ +++++ TG + G+GFV F A AE V+ N G L
Sbjct: 18 NEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEA 77
Query: 56 ---MPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ + S IFVG L + VT+S +T+ + +
Sbjct: 78 KKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDF-KTYFEQFGTTTD 136
Query: 113 AKVVFDANTGRSKGYGFVRF 132
V++D NT R +G+GF+ +
Sbjct: 137 VVVMYDHNTQRPRGFGFITY 156
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGV------- 54
DEN L F++ GE+ + V+R K TG G+GFV F A ++VLQ+ +
Sbjct: 18 DENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDV 77
Query: 55 --LMPNTDQPFRLNWATFSTGEK--TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 110
M +Q TF+ + NV IFVG L +T F + P V
Sbjct: 78 KRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGP-V 136
Query: 111 KAAKVVFDANTGRSKGYGFVRFGDDNERS 139
A ++ D T R +G+GFV F D+E S
Sbjct: 137 SDAVIMIDQTTQRPRGFGFVSF--DSEDS 163
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D ++LL E F++ + V V+ + TGR +G+GFV F D + +
Sbjct: 8 LFIGGISWDTDENLLREYFSN-FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--IFVGGLDPNVTEE 202
+ + +R + + A R+ +S + T IFVGGL P +T +
Sbjct: 67 KH--HIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSD 124
Query: 203 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGTTIGKQT 252
+ R F YG + I + +G GFV F + ++ + L K GKQ
Sbjct: 125 EFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 5/74 (6%)
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQK 242
+++VGGL ++TEE +R+ FS YG +++VKI GK GFV F+NR +A++A++
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66
Query: 243 LNGTTIGKQTVRLS 256
++G +IG + VR++
Sbjct: 67 MDGKSIGGRAVRVN 80
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 19 IKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKTSD 78
++V+ N+ TG S G+ FV + ++ N G + ++N+A +K
Sbjct: 114 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGT--EYLGRALKVNFA-----DKPKP 166
Query: 79 NVSDL------SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
N L +FVG+L+ VT L F V A+VVFD +TGRS+GYGFV +
Sbjct: 167 NKEPLYPETEHKLFVGNLSWTVTSESLAGAFREC-GDVVGARVVFDGDTGRSRGYGFVCY 225
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
E A+ ++G R +R+ A +K
Sbjct: 226 SSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
++ G+L +V + L + + + + +V+++ +TG+S+G+ FV + + + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQD-FANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
++G R +++ A K P T +FVG L VT E L
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKE------------PLYPETEHKLFVGNLSWTVTSESL 193
Query: 205 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWG 258
F + G++V ++ +G GFV ++++ E AL+ L+G + + +R++
Sbjct: 194 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Query: 259 R 259
+
Sbjct: 254 Q 254
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 74 EKTSDNVSDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
E+ ++ SDL +F+G ++ D + L E F Y + A ++ D TGR++G+GF+ F
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYFGK-YGDLVEAVIMRDRTTGRARGFGFIVF 60
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE-----SDSTN 187
D + + + M+ R + A PR P +
Sbjct: 61 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART 118
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQ 241
IFVGGL ++TE + + F Q+G I V + +G GF+ F + + + L
Sbjct: 119 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 178
Query: 242 K----LNGTTI 248
K LNG +
Sbjct: 179 KTFHELNGKMV 189
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L F G++ ++R++ TG + G+GF+ F + AE+V+ + A
Sbjct: 24 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEA 83
Query: 53 GVLMPNTDQ--------PFRL---NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHE 101
+P DQ P L + G +T IFVG L + +T++
Sbjct: 84 KKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK------KIFVGGLPSSITEAEFKN 137
Query: 102 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT------QMNGVYCSSR-- 153
F + ++ V++D NT R +G+GF+ F D+E S M ++NG +
Sbjct: 138 YFDQ-FGTIADVVVMYDHNTQRPRGFGFITF--DSEESVDMVLHKTFHELNGKMVEVKRA 194
Query: 154 -PMRIGAATPRK 164
P + + TP +
Sbjct: 195 VPKELSSTTPNR 206
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 81 SDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
SDL +F+G ++ D + L + F++ Y V A ++ D TGR++G+GF+ F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 140 QAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--IFVGGLDP 197
+ + M+ R + A PR P T IFVGGL
Sbjct: 62 RVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 198 NVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTT 247
++TEE+ + F Q+G I V + +G GF+ F + + + L K LNG
Sbjct: 120 SITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 248 I 248
+
Sbjct: 180 V 180
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ + A
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 53 GVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFA 104
+P DQ P L G +T IFVG L + +T+ F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSITEEEFKNYFD 131
Query: 105 SVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+ ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 132 Q-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 81 SDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
SDL +F+G ++ D + L + F++ Y V A ++ D TGR++G+GF+ F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 140 QAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--IFVGGLDP 197
+ + M+ R + A PR P T IFVGGL
Sbjct: 62 RVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 198 NVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTT 247
++TEE+ + F Q+G I V + +G GF+ F + + + L K LNG
Sbjct: 120 SITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 248 I 248
+
Sbjct: 180 V 180
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ + A
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 53 GVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFA 104
+P DQ P L G +T IFVG L + +T+ F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSITEEEFKNYFD 131
Query: 105 SVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+ ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 132 Q-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 75 KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGD 134
++ D S IF+G L D T+++ ++ F Y + + ++ D +TG+ +G+GF+ F D
Sbjct: 11 QSGDGASPGKIFIGGLHKDTTNTVFNKHFGK-YGEITDSVIMRDRHTGQPRGFGFITFAD 69
Query: 135 DNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGG 194
+ + + + + + + + I P+ D IFVGG
Sbjct: 70 PSVVDKVIEDTHVI--NGKQVEIKRTIPK------------GAGGNQSKDIKTKKIFVGG 115
Query: 195 LDPNVTEEDLRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTI 248
+ VTE++L+ F++YG +V ++ +G GFV F + +E L K N +
Sbjct: 116 IPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM 175
Query: 249 GKQTVRL-SWG 258
V L WG
Sbjct: 176 ADTQVSLYKWG 186
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 65
++ F GEI+ ++R++ TG G+GF+ F + +KV+++ + N Q
Sbjct: 35 FNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVI---NGKQVEIK 91
Query: 66 NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSK 125
G S ++ IFVG + + VT+ L + FA Y +V +V+ D T RS+
Sbjct: 92 RTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK-YGNVVEHQVIRDHETNRSR 150
Query: 126 GYGFVRFGDDNERSQAMTQMNGV 148
G+GFV F + + +++ N +
Sbjct: 151 GFGFVIFDSEEVVDELLSKGNMI 173
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 74 EKTSDNVSDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
E+ ++ SDL +F+G ++ D + L E F Y + A ++ D TGR++G+GF+ F
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGK-YGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE-----SDSTN 187
D + + + M+ R + A PR P +
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGART 121
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQ 241
IFVGGL ++TE + + F Q+G I V + +G GF+ F + + + L
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 242 K----LNGTTI 248
K LNG +
Sbjct: 182 KTFHELNGKMV 192
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L F G++ ++R++ TG + G+GF+ F + AE+V+ + A
Sbjct: 27 DEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEA 86
Query: 53 GVLMPNTDQ--------PFRL---NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHE 101
+P DQ P L + G +T IFVG L + +T++
Sbjct: 87 KKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK------KIFVGGLPSSITEAEFKN 140
Query: 102 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT------QMNGVYCSSR-- 153
F + ++ V++D NT R +G+GF+ F D+E S M ++NG +
Sbjct: 141 YFDQ-FGTIADVVVMYDHNTQRPRGFGFITF--DSEESVDMVLHKTFHELNGKMVEVKRA 197
Query: 154 -PMRIGAATPRK 164
P + + TP +
Sbjct: 198 VPKELSSTTPNR 209
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 81 SDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
SDL +F+G ++ D + L + F++ Y V A ++ D TGR++G+GF+ F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 140 QAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--IFVGGLDP 197
+ + M+ R + A PR P T IFVGGL
Sbjct: 62 RVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 198 NVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTT 247
++TEE+ + F Q+G I V + +G GF+ F + + + L K LNG
Sbjct: 120 SITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 248 I 248
+
Sbjct: 180 V 180
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ + A
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 53 GVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFA 104
+P DQ P L G +T IFVG L + +T+ F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSITEEEFKNYFD 131
Query: 105 SVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+ ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 132 Q-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 81 SDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
SDL +F+G ++ D + L + F++ Y V A ++ D TGR++G+GF+ F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLRDYFSN-YGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 140 QAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--IFVGGLDP 197
+ + M+ R + A PR P T IFVGGL
Sbjct: 62 RVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPS 119
Query: 198 NVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTT 247
++TEE+ + F Q+G I V + +G GF+ F + + + L K LNG
Sbjct: 120 SITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 248 I 248
+
Sbjct: 180 V 180
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ + A
Sbjct: 18 DEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEA 77
Query: 53 GVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFA 104
+P DQ P L G +T IFVG L + +T+ F
Sbjct: 78 KKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSITEEEFKNYFD 131
Query: 105 SVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+ ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 132 Q-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDN--ERSQAM 142
+F+G ++ + ++ L + F S + V A ++ D TGR++G+GFV F D N ER +
Sbjct: 8 LFIGGISWETSEDRLRDYFHS-FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 143 TQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEE 202
+ + + A PR S+S IFVGGL +VTE
Sbjct: 67 KHI----IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKK--IFVGGLASSVTEA 120
Query: 203 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIGKQT 252
+ ++ F+Q+G I V + +G GF+ + + ++ LQK LNG +
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV---E 177
Query: 253 VRLSWGRNPANKQIR 267
V+L+ ++ A +R
Sbjct: 178 VKLAVPKDMALNTMR 192
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL---QNYAGVLMPNT 59
E+ L F S GE+ +++++ TG + G+GFV F AE+V+ G ++
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Query: 60 DQPFRLNWATF----STGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKV 115
R + F S+ + + + IFVG LA+ VT++ + FA + + V
Sbjct: 79 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ-FGMITDVVV 137
Query: 116 VFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
++D T R +G+GF+ + D E + Q + + + + A P+
Sbjct: 138 MYDHRTQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQ 241
+ IFVGGL P VT+ DL + FS++G+I+ +I + +G GF+ FA+R +E+++
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWG 275
+++G G + + + N A ++ D G G
Sbjct: 67 EMHGRDFGDRVISV----NRAEPKLGRDDGESHG 96
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
IFVG L+ +VTD L F S + + +++ + +TGRS+G+GF+ F D +++ +
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G R + + A P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDN--ERSQAM 142
+F+G ++ + ++ L + F S + V A ++ D TGR++G+GFV F D N ER +
Sbjct: 8 LFIGGISWETSEDRLRDYFHS-FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 143 TQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEE 202
+ + + A PR S+S IFVGGL +VTE
Sbjct: 67 KHI----IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKK--IFVGGLASSVTEA 120
Query: 203 DLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTIGKQT 252
+ ++ F+Q+G I V + +G GF+ + + ++ LQK LNG +
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMV---E 177
Query: 253 VRLSWGRNPANKQIR 267
V+L+ ++ A +R
Sbjct: 178 VKLAVPKDMALNTMR 192
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL---QNYAGVLMPNT 59
E+ L F S GE+ +++++ TG + G+GFV F AE+V+ G ++
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAK 78
Query: 60 DQPFRLNWATF----STGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKV 115
R + F S+ + + + IFVG LA+ VT++ + FA + + V
Sbjct: 79 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQ-FGMITDVVV 137
Query: 116 VFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
++D T R +G+GF+ + D E + Q + + + + A P+
Sbjct: 138 MYDHRTQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEVKLAVPK 184
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F +A T+ ++E F+ V+ +++ D + RS+G G+V F D A+
Sbjct: 232 TVFAYQIALRATERDVYEFFSRA-GKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 290
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K ++VG L N++E+D
Sbjct: 291 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDD 349
Query: 204 LRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LR+ F +G + V++P + KG GFVQFA +A AL LNG I + +++S
Sbjct: 350 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 407
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 96 DSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPM 155
DS + + S + ++ V+ D +TGRS+G+G+V F + A+ + + +R +
Sbjct: 15 DSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNRIL 72
Query: 156 RIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIV 215
+ ATP++ + T IFV + +V+E D R F +YGEI
Sbjct: 73 EVKVATPKEEMR--------------QPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
Query: 216 SVKIPVG------KGCGFVQFANRNNAEEALQ---KLNGTTI 248
+ +P +G GF+ F++ ++ E+ ++ L GTT+
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTV 160
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 96 DSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPM 155
DS + + S + ++ V+ D +TGRS+G+G+V F + A+ + + +R +
Sbjct: 15 DSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEH--FLGNRIL 72
Query: 156 RIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIV 215
+ ATP++ + T IFV + +V+E D R F +YGEI
Sbjct: 73 EVKVATPKEEMR--------------QPAKKVTRIFVARIPSSVSESDFRSHFERYGEIT 118
Query: 216 SVKIPVG------KGCGFVQFANRNNAEEALQ---KLNGTTI 248
+ +P +G GF+ F++ ++ E+ ++ L GTT+
Sbjct: 119 DLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTV 160
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 39/242 (16%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
E+T +N + +FVG + +T+ L F + V ++ + T +G F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFRE-FSIVNEVNIIKEKTTRAPRGCCFLTC 60
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFV 192
+ + + + ++ GA++P + E + +FV
Sbjct: 61 PTREDADKVINSFH-----NKKTLPGASSPLQVKYADG-----------ELERLEHKLFV 104
Query: 193 GGLDPNVTEEDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNGTT 247
G L NV+E +++ FS+YG I ++I G KGC F+++ ++ A A++ LNG
Sbjct: 105 GMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRH 164
Query: 248 I---GKQTVRLSWGRNPANKQIRMDFG--------SPWGGAYYGA------PVYDGYGYA 290
I + + W +Q R P + +GA P Y+GYGY
Sbjct: 165 IMEGANVPLIVKWADTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYH 224
Query: 291 LP 292
+P
Sbjct: 225 VP 226
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 10 FASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWAT 69
F GE+ ++ ++ TG G+GFV F A AEKVL+ + D+ L T
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVI----DDRKVDLK-RT 140
Query: 70 FSTGEKTSD--NVSDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKG 126
G+K +D VS IFVG L + + L F VY + ++++D +TGRS+G
Sbjct: 141 LPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC-VYGDIIEHQIMYDHHTGRSRG 199
Query: 127 YGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
+GFV F ++ + + + + I A P++
Sbjct: 200 FGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKR 237
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQ 241
T +F+GGL + LR F+ +G++V K+ V +G GFV F + A A+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQ 265
+++G + + +R+ NPAN +
Sbjct: 95 EMDGKELNGRHIRV----NPANDR 114
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F +A T+ ++E F S V+ +++ D + RS+G G+V F D A+
Sbjct: 183 TVFAYQIALRATERDVYEFF-SRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K ++VG L N++E+D
Sbjct: 242 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDD 300
Query: 204 LRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LR+ F +G + V++P + KG GFVQFA +A AL LNG I + +++S
Sbjct: 301 LRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 358
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 187 NTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEAL 240
+ IFVGGL +VTE L F +YG+I +I VG +G GF+ F +R A++A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 241 QKLNGTTIGKQTV 253
+ ++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 133
++ +D + IFVG L+ DVT+ L TF Y + +++ +TGR +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
D A+ M+G ++ + + A P+
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 187 NTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEAL 240
+ IFVGGL +VTE L F +YG+I +I VG +G GF+ F +R A++A+
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 241 QKLNGTTIGKQTV 253
+ ++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 133
++ +D + IFVG L+ DVT+ L TF Y + +++ +TGR +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
D A+ M+G ++ + + A P+
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPK 91
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
E+T +N + +FVG + +T+ L F + V ++ + T +G F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFRE-FSIVNEVNIIKEKTTRAPRGCCFLTC 60
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFV 192
+ + + + ++ GA++P + S + +FV
Sbjct: 61 PTREDADKVINSFH-----NKKTLPGASSPLQVKYADGELERLDVLDC--SCNPEHKLFV 113
Query: 193 GGLDPNVTEEDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNGTT 247
G L NV+E +++ FS+YG I ++I G KGC F+++ ++ A A++ LNG
Sbjct: 114 GMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRH 173
Query: 248 I---GKQTVRLSWGRNPANKQIRMDFG--------SPWGGAYYGA------PVYDGYGYA 290
I + + W +Q R P + +GA P Y+GYGY
Sbjct: 174 IMEGANVPLIVKWADTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYGYH 233
Query: 291 LP 292
+P
Sbjct: 234 VP 235
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG L+ DS L + F S + V A V+ D TGRS+G+GFV F ++ + A+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG L+ DS L + F S + V A V+ D TGRS+G+GFV F ++ + A+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+++G++ VT+ L + + +V+ +V++D +GRS+ +GF + + + +
Sbjct: 78 VYIGNIPRTVTNEQLTK-LVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+NG R +++ K DS ++VG L VT+E L
Sbjct: 137 LNGNTVEGREIKVNIT--EKPIASSPDLSVLQSEDSAFVDSP-YKVYVGNLAKTVTKEML 193
Query: 205 RQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
FS+ G++VS K+ G GFV F++ + E A+ LN + + Q +R+
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 10/177 (5%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+++G++ VT+ L + + +V+ +V++D +GRS+ +GF + + + +
Sbjct: 78 VYIGNIPRTVTNEQLTK-LVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+NG R +++ K DS ++VG L VT+E L
Sbjct: 137 LNGNTVEGREIKVNIT--EKPIASSPDLSVLQSEDSAFVDSP-YKVYVGNLAKTVTKEML 193
Query: 205 RQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
FS+ G++VS K+ G GFV F++ + E A+ LN + + Q +R+
Sbjct: 194 ENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 42/236 (17%)
Query: 83 LSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 142
+ +FVG + +++S L F + V ++ D T S+G F+ E + +
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQE-FAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 143 TQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEE 202
C ++ GA + + E + +FVG L NV+E
Sbjct: 77 NA-----CHNKKTLPGANSLLQVKYADG-----------ELERLEHKLFVGMLPKNVSEA 120
Query: 203 DLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRL- 255
+++ FS+YG I ++I G KGC F+++ + A A++ +NG + TV L
Sbjct: 121 EVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180
Query: 256 -SWGRNPANKQI-----------RMDFGSPWGGAYYGA------PVYDGYGYALPP 293
W + R+ G P + +GA P Y+GYGY PP
Sbjct: 181 VKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPP 236
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 16/187 (8%)
Query: 84 SIFVGDLAADVTDSLLHETFA---SVYP-----SVKAAKVVFDANTGRSKGYGFVRFGDD 135
++F +A T+ ++E F+ V P V+ +++ D + RS+G G+V F D
Sbjct: 212 TVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYDT 271
Query: 136 NERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGL 195
A+ ++G +P+ + + K ++VG L
Sbjct: 272 MSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNL 330
Query: 196 DPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGT-TIG 249
N++E+DLR+ F +G + V++P + KG GFVQFA +A AL LNG I
Sbjct: 331 HINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIA 389
Query: 250 KQTVRLS 256
+ +++S
Sbjct: 390 GRAIKVS 396
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 45/218 (20%)
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+PFR + + F + +++VG L + T+S L E F Y + V
Sbjct: 6 KPFRADDSGFQSN----------NLWVGSLTPETTESDLTELFGR-YGDIDRITVY---- 50
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPC-------------- 94
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
+++VGG+ PNV+++DL + FS++G+I + + F+ + ++A +A
Sbjct: 95 -------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 241 QKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAY 278
+ +NG +G +R+ + R+ A K+ + W G+Y
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPKKEQ------WAGSY 178
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
M N + F G ++++++IR K G + G+ FV S A+ + + +
Sbjct: 106 MSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSG-- 162
Query: 61 QPFRLNWATFSTGEK--TSDNVSDL----------SIFVGDLAADVTDSLLHETFASVYP 108
R+ +F+ K T + +DL ++V +LA + L E F +
Sbjct: 163 ---RIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADF 219
Query: 109 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRI 157
+ +A+VVF GRS GYGFV F E A+T++NG RP+ +
Sbjct: 220 NPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITL 268
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 45/218 (20%)
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+PFR + + F + +++VG L + T+S L E F Y + V
Sbjct: 6 KPFRADDSGFQSN----------NLWVGSLTPETTESDLTELFGR-YGDIDRITVY---- 50
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPC-------------- 94
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
+++VGG+ PNV+++DL + FS++G+I + + F+ + ++A +A
Sbjct: 95 -------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 241 QKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAY 278
+ +NG +G +R+ + R+ A K+ + W G+Y
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPKKEQ------WAGSY 178
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 45/218 (20%)
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+PFR + + F + +++VG L + T+S L E F Y + V
Sbjct: 6 KPFRADDSGFQSN----------NLWVGSLTPETTESDLTELFGR-YGDIDRITVY---- 50
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPC-------------- 94
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
+++VGG+ PNV+++DL + FS++G+I + + F+ + ++A +A
Sbjct: 95 -------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 241 QKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAY 278
+ +NG +G +R+ + R+ A K+ + W G+Y
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPKKEQ------WAGSY 178
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 95/218 (43%), Gaps = 45/218 (20%)
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+PFR + + F + +++VG L + T+S L E F Y + V
Sbjct: 6 KPFRADDSGFQSN----------NLWVGSLTPETTESDLTELFGR-YGDIDRITVY---- 50
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
S+G+ F+ + E A + G + ++I A P K
Sbjct: 51 --SSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYARPAKPC-------------- 94
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
+++VGG+ PNV+++DL + FS++G+I + + F+ + ++A +A
Sbjct: 95 -------KSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA- 146
Query: 241 QKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAY 278
+ +NG +G +R+ + R+ A K+ + W G+Y
Sbjct: 147 KSMNGKPMGGSFLRVDFLRSQAPKKEQ------WAGSY 178
>AT3G10845.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:3394009-3397526 FORWARD LENGTH=423
Length = 423
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 100/263 (38%), Gaps = 56/263 (21%)
Query: 13 TGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFST 72
GE+ S+++I N + G FVEF S A+KVL+N G + F +
Sbjct: 150 VGEVVSVRLIANHEDK-PVGCAFVEFLSANEAKKVLENKNG-------EYFHGHKIILMR 201
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
G + + ++ + V +TG+ G GFV F
Sbjct: 202 GHGETPDFAEHRLIVN-------------------------------HTGKHVGKGFVEF 230
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAAT------PRKXXXXXXXXXXXXXXXXPES--- 183
E A+ + G Y + + AA P+ E+
Sbjct: 231 ASAKEAENALEKKKGEYLQDGEIFLKAANIAPFPPPKYEDYLGQERDEAAVEGLAETPYF 290
Query: 184 --DSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGK-----GCGFVQFANRNNA 236
++ T+FV L P + + + F + E+V V++ V + GCG+ +FA+ N A
Sbjct: 291 VEEARKKTLFVTNLPPRTSIQRMLYFFQDF-EVVRVRLIVDQSGKHMGCGYFEFASANEA 349
Query: 237 EEALQKLNGTTIGKQTVRLSWGR 259
E+AL++ NG ++ + L
Sbjct: 350 EKALEQRNGKSLRYHKIFLELAE 372
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F + T+ ++E F+ V+ +++ D N+ RSKG G++ F D A+
Sbjct: 169 TVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K + + ++VG L N++E
Sbjct: 228 -LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGG------TGPADRKLYVGNLHFNMSELQ 280
Query: 204 LRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LRQ F +G + V++P+ KG GF+QF +++ A LNG I +T+++S
Sbjct: 281 LRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E ++ F+ G++ +++I ++ + S+G G++EFY + + +G L
Sbjct: 181 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA-LSGQLFLGQPVM 239
Query: 63 FRLNWATFSTGEKTSDNV-----SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
+ + A + + S V +D ++VG+L ++++ L + F + P V+ ++
Sbjct: 240 VKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGP-VELVQLPL 298
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNG-VYCSSRPMRIGAAT 161
D TG+ KG+GF++F A +NG + + R +++ + +
Sbjct: 299 DPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVS 343
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 183 SDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNA 236
S S ++T+FV G+ + TEE L Q FSQYG+++ V + + KG +V F+++ A
Sbjct: 16 SRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEA 75
Query: 237 EEALQKLNGTTIGKQTVRL 255
E+AL +LN + + V L
Sbjct: 76 EKALLELNAQLVDGRVVIL 94
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 42/236 (17%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
+ +FVG + +++S L F + V ++ D T S+G F+ E +
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQE-FAVVDEVNIIKDKITRASRGCCFLLCPSREEADKL 75
Query: 142 MTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
+ C ++ GA + + E + +FVG L NV+E
Sbjct: 76 VNA-----CHNKKTLPGANSLLQVKYADG-----------ELERLEHKLFVGMLPKNVSE 119
Query: 202 EDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRL 255
+++ FS+YG I ++I G KGC F+++ + A A++ +NG + TV L
Sbjct: 120 AEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPL 179
Query: 256 --SWGRNPANKQI-----------RMDFGSPWGGAYYGA------PVYDGYGYALP 292
W + R+ G P + +GA P Y+GYGY P
Sbjct: 180 VVKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHPP 235
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ + V DS L ++++ + ++ A +S+G+ + + D AM
Sbjct: 186 TLFVRNINSSVEDSEL----SALFEPFGEIRSLYTA--CKSRGFVMISYYDIRAAHAAMR 239
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P++ E D T+ + +D V+ ++
Sbjct: 240 ALQNTLLRKRTLDIHFSIPKENPS--------------EKDMNQGTLVIFNVDTTVSNDE 285
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
L Q F YGEI ++ P + F+++ + +AE AL+ LN + IG + ++L R
Sbjct: 286 LLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 342
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ + V DS L ++++ + ++ A +S+G+ + + D AM
Sbjct: 186 TLFVRNINSSVEDSEL----SALFEPFGEIRSLYTA--CKSRGFVMISYYDIRAAHAAMR 239
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P++ E D T+ + +D V+ ++
Sbjct: 240 ALQNTLLRKRTLDIHFSIPKENPS--------------EKDMNQGTLVIFNVDTTVSNDE 285
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
L Q F YGEI ++ P + F+++ + +AE AL+ LN + IG + ++L R
Sbjct: 286 LLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 342
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
DL +FVG+L+ +V + L + F S +V+ +V++D TGRS+G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 142 MTQMNGVYCSSRPMRIGAATP 162
Q NG RP+R+ A P
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPP 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
++VG+L+ V D L F V A+V++D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNE-QGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 145 MNGVYCSSRPMRIGAATPR 163
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
DL +FVG+L+ +V + L + F S +V+ +V++D TGRS+G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 142 MTQMNGVYCSSRPMRIGAATP 162
Q NG RP+R+ A P
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPP 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
++VG+L+ V D L F V A+V++D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNE-QGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 145 MNGVYCSSRPMRIGAATPR 163
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
DL +FVG+L+ +V + L + F S +V+ +V++D TGRS+G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 142 MTQMNGVYCSSRPMRIGAATP 162
Q NG RP+R+ A P
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPP 177
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
++VG+L+ V D L F V A+V++D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNE-QGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 145 MNGVYCSSRPMRIGAATPR 163
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ + V DS L ++++ + ++ A +S+G+ + + D AM
Sbjct: 199 TLFVRNINSSVEDSEL----SALFEPFGEIRSLYTA--CKSRGFVMISYYDIRAAHAAMR 252
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P++ E D T+ + +D V+ ++
Sbjct: 253 ALQNTLLRKRTLDIHFSIPKENPS--------------EKDMNQGTLVIFNVDTTVSNDE 298
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
L Q F YGEI ++ P + F+++ + +AE AL+ LN + IG + ++L R
Sbjct: 299 LLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 355
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 107/271 (39%), Gaps = 39/271 (14%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E L + F GE++ +++++N QT S+G F+ F + A++ ++ ++
Sbjct: 227 EEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMI------ 280
Query: 63 FRLNWATFSTGEKTSDNVS--DLSIFVGDLAADVTDSLLHETFASV-YPSVKAAKVVFDA 119
G+K S + ++FVG++ T L E ++ +V D+
Sbjct: 281 ---------NGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDS 331
Query: 120 -NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
N ++GY F+ F + RS AM + + + G P K
Sbjct: 332 NNVNMNRGYAFLEF---SSRSDAMDAHKRLV--KKDVMFGVEKPAKVSFTDSFLDLED-- 384
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFAN 232
E + TIF+ GL P+ EE +R YG++ V++ K GFV F
Sbjct: 385 ---EIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDT 441
Query: 233 RNNAEEALQKLNGTTIG----KQTVRLSWGR 259
A + +N + +G K VR R
Sbjct: 442 HEAAVSCAKFINNSELGEGEDKAKVRARLSR 472
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN-YAGVLMPNTDQ 61
E + F G + + +I++K+TG +G FV++ + A++ ++ + + +P
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTG 192
Query: 62 PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANT 121
P ++ +A GE+ + +FVG L T+ + E F + V+ ++ D
Sbjct: 193 PVQVRYA---DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQ-FGHVEDVYLMRDEYR 248
Query: 122 GRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 164
+S+G GFV++ A+ +NG Y ++P+ + A P++
Sbjct: 249 -QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G L+ V + L + F+S + V ++ +D +GRS+G+GFV F ++ + A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G RP+RI A R
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN-YAGVLMPNTDQ 61
E + F G + + +I++K+TG +G FV++ + A++ ++ + + +P
Sbjct: 133 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTG 192
Query: 62 PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANT 121
P ++ +A GE+ + +FVG L T+ + E F + V+ ++ D
Sbjct: 193 PVQVRYA---DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQ-FGHVEDVYLMRDEYR 248
Query: 122 GRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 164
+S+G GFV++ A+ +NG Y ++P+ + A P++
Sbjct: 249 -QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 184 DSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI---------PVGKGCGFVQFANRN 234
D T ++VG L P V E L + F ++G I SVKI + CGFV F NR
Sbjct: 175 DPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRA 234
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGR 259
+ + A ++ G + + +++ WG+
Sbjct: 235 DGQAAKDEMQGIIVYEYELKIGWGK 259
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN-YAGVLMPNTDQ 61
E + F G + + +I++K+TG +G FV++ + A++ ++ + + +P
Sbjct: 58 EEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTG 117
Query: 62 PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANT 121
P ++ +A GE+ + +FVG L T+ + E F + V+ ++ D
Sbjct: 118 PVQVRYA---DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQ-FGHVEDVYLMRDEYR 173
Query: 122 GRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 164
+S+G GFV++ A+ +NG Y ++P+ + A P++
Sbjct: 174 -QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 218
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 69 TFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 128
T + ++T + D + V +L+ + + F V V VV + G+ GYG
Sbjct: 144 TVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVV--NHEGKHVGYG 201
Query: 129 FVRFGDDNERSQAMTQMNGVYCSSRPMRI--GAATPRKXXXXXXXXXXXXXXXXPESDST 186
FV F ++A+ + NG Y + + + G +P E +
Sbjct: 202 FVEFASAYGANKALEEKNGEYLHNHKILLMKGHESP----------------GFAEEAAI 245
Query: 187 NTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV---GK--GCGFVQFANRNNAEEALQ 241
T+FV L ++ D+ F GE+V V++ V GK G GFV+FA+ N AE+AL
Sbjct: 246 TKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALV 305
Query: 242 KLNGTTIGKQTVRLSWGRNPANK 264
K NG + + L + ++
Sbjct: 306 K-NGEYLHNYKISLDGAKTAPHR 327
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 239
+++ +F+GG+ ++ E+ LR+ F++YGE+V ++ + +G GFV F + A A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 240 LQKLNGTTIGKQTVRLSW 257
+Q L+G + + V++++
Sbjct: 98 IQALDGRDLHGRVVKVNY 115
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FV ++ + + D L F + V+A G+++G+ V + D +A
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQ-FGDVRALHTA-----GKNRGFIMVSYYDIRAAQKAARA 266
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
++G R + I + P++ P+ +S+ ++V LD +++ E+L
Sbjct: 267 LHGRLLRGRKLDIRYSIPKEN---------------PKENSSEGALWVNNLDSSISNEEL 311
Query: 205 RQPFSQYGEIVSVKIPVGKGCG-FVQFANRNNAEEALQKLNGTTIGKQTVRLS 256
FS YGEI V+ + + +++F + A+ ALQ LNG + + ++L+
Sbjct: 312 HGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLA 364
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQ 241
+ +F+GGL TE+ L + FS+ G++V +I + KG GFV FA+ + A++AL
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 242 KLNGTTIGKQTVRLSWGR 259
+ NG + +T+ + + +
Sbjct: 94 EFNGQQLNGRTIFVDYAK 111
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
++VG+L+ V D L F V A+V++D ++GRSKG+GFV E +A+
Sbjct: 280 LYVGNLSWGVDDMALENLFNE-QGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 145 MNGVYCSSRPMRIGAATPR 163
+NG R +R+ A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
>AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG----CG--FVQFANRNN 235
E+ +TT+++G + TEE L + FS+ GEI + + + K CG FV F +R +
Sbjct: 28 EALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSRED 87
Query: 236 AEEALQKLNGTTIGKQTVRL----------SWGRNPANKQIRMDFGSPWGGAYYGAPVYD 285
E+A++ ++GT + + +R+ WGR + Q+R ++ + + P
Sbjct: 88 TEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYD------PARG 141
Query: 286 GYG 288
GYG
Sbjct: 142 GYG 144
>AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG----CG--FVQFANRNN 235
E+ +TT+++G + TEE L + FS+ GEI + + + K CG FV F +R +
Sbjct: 28 EALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSRED 87
Query: 236 AEEALQKLNGTTIGKQTVRL----------SWGRNPANKQIRMDFGSPWGGAYYGAPVYD 285
E+A++ ++GT + + +R+ WGR + Q+R ++ + + P
Sbjct: 88 TEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYD------PARG 141
Query: 286 GYG 288
GYG
Sbjct: 142 GYG 144
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 86 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 145
FVG LA D L TF S + V +K++ D +GRS+G+GFV F D+ A+ +M
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 146 NGVYCSSRPMRIGAA 160
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 86 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 145
FVG LA D L TF S + V +K++ D +GRS+G+GFV F D+ A+ +M
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 146 NGVYCSSRPMRIGAA 160
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 86 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 145
FVG LA D L TF S + V +K++ D +GRS+G+GFV F D+ A+ +M
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 146 NGVYCSSRPMRIGAATPR 163
NG R + + A R
Sbjct: 68 NGKELDGRVITVNEAQSR 85
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 86 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 145
FVG LA D L FA Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFAQ-YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 146 NGVYCSSRPMRIGAA 160
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 86 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 145
FVG LA D L FA Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFAQ-YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 146 NGVYCSSRPMRIGAA 160
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 80 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
+S IFVG ++ + L E F S Y V AK++ D TGRS+G+ FV F E S
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEAS 89
Query: 140 QAMTQMNGVYCSSRPMRIGAAT 161
AM Q++G R +R+ AT
Sbjct: 90 NAM-QLDGQDLHGRRIRVNYAT 110
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 239
+++ IFVGG+ + E LR+ FS+YGE+V KI V +G FV F + A A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 240 LQKLNGTTIGKQTVRLSW 257
+Q L+G + + +R+++
Sbjct: 92 MQ-LDGQDLHGRRIRVNY 108
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
F+G LA +D L + F Y + AKVV D +GRS+G+GF+ F + +A+
Sbjct: 9 CFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 145 MNGVYCSSRPMRIGAATP 162
MNG+ R + + A P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
>AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412898-3418382 REVERSE LENGTH=947
Length = 947
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 184 DSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI---------PVGKGCGFVQFANRN 234
D T ++V L V E L + F ++G I SVKI + CGFV F NR
Sbjct: 183 DPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRA 242
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGR 259
+ E A +K+ G + + +++ WG+
Sbjct: 243 DGEAAKEKMQGIIVYEYELKIGWGK 267