Miyakogusa Predicted Gene
- Lj5g3v0035410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0035410.1 Non Chatacterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,27.66,0.0000000000001,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain;
,CUFF.52448.1
(305 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 284 5e-77
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 283 1e-76
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 282 2e-76
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 276 2e-74
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 274 6e-74
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 244 5e-65
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 243 8e-65
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 239 2e-63
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 237 6e-63
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 237 9e-63
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 232 3e-61
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 116 2e-26
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 113 1e-25
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 112 3e-25
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 112 3e-25
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 110 1e-24
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 82 3e-16
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 79 4e-15
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 78 6e-15
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 77 1e-14
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 77 1e-14
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 75 6e-14
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 75 8e-14
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 74 1e-13
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 73 2e-13
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 73 2e-13
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 73 3e-13
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 8e-13
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 71 1e-12
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 2e-12
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 3e-12
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 7e-12
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 67 2e-11
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 3e-11
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 5e-11
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 65 8e-11
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 1e-10
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 1e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 57 1e-08
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 55 6e-08
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 55 7e-08
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 55 7e-08
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 53 2e-07
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 52 5e-07
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 8e-07
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 1e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 51 1e-06
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 50 1e-06
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 50 1e-06
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 50 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 50 2e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 50 2e-06
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 50 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 49 3e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 9e-06
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 284 bits (727), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/210 (68%), Positives = 159/210 (75%), Gaps = 5/210 (2%)
Query: 81 NIENKTVWVGDLHHWMDENYLHRCFASTGE--ISSIKVIRNKQTGLSEGYGFVEFYSHAT 138
N ENKT+WVGDLHHWMDE YL+ FAS E I S+KVIRNK GLSEGYGFVEF SH
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 139 AEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKT-SDNVSDLSIFVGDLAADVTDSLLHET 197
A+KVL+ + G MPNTDQPFRLNWA+FSTGEK +N DLSIFVGDL+ DV+D+LLHET
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHET 216
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
F+ YPSVKAAKVV DANTGRSKGYGFVRFGD+NER++AMT+MNGV CSSR MRIG ATP
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 258 RKXX--XXXXXXXXXXXXXXPESDSTNTTV 285
RK PE D NTTV
Sbjct: 277 RKTNGYQQQGGYMPNGTLTRPEGDIMNTTV 306
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/210 (67%), Positives = 159/210 (75%), Gaps = 5/210 (2%)
Query: 81 NIENKTVWVGDLHHWMDENYLHRCFASTGE--ISSIKVIRNKQTGLSEGYGFVEFYSHAT 138
N ENKT+WVGDLHHWMDE YL+ FAS E I S+KVIRNK GLSEGYGFVEF SH
Sbjct: 97 NGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDV 156
Query: 139 AEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKT-SDNVSDLSIFVGDLAADVTDSLLHET 197
A+KVL+ + G MPNTDQPFRLNWA+FSTGEK +N DLSIFVGDL+ DV+D+LLHET
Sbjct: 157 ADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHET 216
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
F+ YPSVKAAKVV DANTGRSKGYGFVRFGD+NER++AMT+MNGV CSSR MRIG ATP
Sbjct: 217 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 276
Query: 258 RKXX--XXXXXXXXXXXXXXPESDSTNTTV 285
RK PE D NTT+
Sbjct: 277 RKTNGYQQQGGYMPNGTLTRPEGDIMNTTI 306
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHAT 138
NN + +++VGDL + +N LH F+ + + KV+ + TG S+GYGFV F
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 139 AEKVLQNYAGV--------LMPNTDQPFRLN-------WATFSTGEKTSDNVSDLSIFVG 183
K + GV + P T P + N + T + ++ + +IFVG
Sbjct: 252 RTKAMTEMNGVKCSSRAMRIGPAT--PRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVG 309
Query: 184 DLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGV 243
L + VTD L + F + + + + K+ KG GFV+F + +A+ ++NG
Sbjct: 310 GLDSSVTDEDLKQPF-NEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGT 362
Query: 244 YCSSRPMRI 252
+ +R+
Sbjct: 363 VIGKQTVRL 371
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 130/184 (70%), Positives = 158/184 (85%), Gaps = 3/184 (1%)
Query: 77 GSNNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSH 136
GS +++ KT+WVGDL HWMDE YLH CF+ TGE+SS+KVIRNK T SEGYGFVEF S
Sbjct: 102 GSGDDV--KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSR 159
Query: 137 ATAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKTS-DNVSDLSIFVGDLAADVTDSLLH 195
A AE+VLQNY+G +MPN+DQPFR+NWA+FSTGEK + +N DLS+FVGDL+ DVTD LLH
Sbjct: 160 AAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLH 219
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
ETF+ YPSVK+AKVV D+NTGRSKGYGFVRFGD+NERS+A+T+MNG YCS+R MR+G A
Sbjct: 220 ETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
Query: 256 TPRK 259
TP++
Sbjct: 280 TPKR 283
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 127/176 (72%), Positives = 150/176 (85%), Gaps = 1/176 (0%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
KT+WVGDL HWMDE YLH CF+ T E+SS+KVIRNKQT SEGYGFVEF S + AE+ LQ
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEK-TSDNVSDLSIFVGDLAADVTDSLLHETFASVYP 203
+++GV MPN +QPFRLNWA+FSTGEK S+N DLSIFVGDLA DV+D++L ETFA YP
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 204 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
SVK AKVV D+NTGRSKGYGFVRFGD+NERS+AMT+MNG +CSSR MR+G ATP++
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 81 NIENKTVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHATA 139
N + +++VGDL + + L FA + KV+ + TG S+GYGFV F
Sbjct: 209 NGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENER 268
Query: 140 EKVL-----------QNYAGVLMP---------NTDQPFRLNWATFSTGEKTSDNVSDLS 179
+ + Q G+ P N Q L G + ++ +
Sbjct: 269 SRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNST 328
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
IFVG L ADVT+ L + F S + V + K+ KG GFV+F + +A+
Sbjct: 329 IFVGGLDADVTEEDLMQPF-SDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGN 381
Query: 240 MNGVYCSSRPMRI 252
+NG +R+
Sbjct: 382 LNGTVIGKNTVRL 394
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 134/182 (73%), Positives = 149/182 (81%), Gaps = 3/182 (1%)
Query: 81 NIENKTVWVGDLHHWMDENYLHRCF--ASTGEISSIKVIRNKQTGLSEGYGFVEFYSHAT 138
N ENKT+WVGDL +WMDE YL+ F A EI S+KVIRNK G SEGYGFVEF SH
Sbjct: 99 NGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDV 158
Query: 139 AEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKT-SDNVSDLSIFVGDLAADVTDSLLHET 197
A+KVLQ + G MPNTDQPFRLNWA+FSTGEK +N DLSIFVGDLA DV+D+LLHET
Sbjct: 159 ADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHET 218
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
F+ YPSVKAAKVV DANTGRSKGYGFVRFGD+NER++AMT+MNGV CSSR MRIG ATP
Sbjct: 219 FSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP 278
Query: 258 RK 259
RK
Sbjct: 279 RK 280
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 21/187 (11%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHAT 138
NN + +++VGDL + + LH F+ + + KV+ + TG S+GYGFV F
Sbjct: 194 NNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 253
Query: 139 AEKVLQNYAGV-----------LMPNTDQPFRLNWATFSTGE--KTSDNVSDLSIFVGDL 185
K + GV P ++ +G ++ + + +IFVG L
Sbjct: 254 RTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGL 313
Query: 186 AADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYC 245
+ VTD L + F S + + + K+ KG GFV+F + +A+ ++NG
Sbjct: 314 DSSVTDEDLKQPF-SEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVI 366
Query: 246 SSRPMRI 252
+ +R+
Sbjct: 367 GKQTVRL 373
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 120/218 (55%), Positives = 148/218 (67%), Gaps = 13/218 (5%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +W+DENYL CF+ TGE+ S+KVIRNK TG EGYGF+EF SHA AE+
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
LQ Y G MP T+ FRLNWA+F +G+K D D SIFVGDLA DVTD LL ETF Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQETFRVHY 140
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK--- 259
SV+ AKVV D +TGRSKGYGFV+F +++ER++AM +MNG+YCS+RPMRI AATP+K
Sbjct: 141 SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVG 200
Query: 260 ---------XXXXXXXXXXXXXXXXPESDSTNTTVSFS 288
PESD T TT+S +
Sbjct: 201 VQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVA 238
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 243 bits (621), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 112/177 (63%), Positives = 138/177 (77%), Gaps = 1/177 (0%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +W+DENYL CF+ TGE+ S+KVIRNK TG EGYGF+EF SHA AE+
Sbjct: 22 EVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERT 81
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
LQ Y G MP T+ FRLNWA+F +G+K D D SIFVGDLA DVTD LL ETF Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQETFRVHY 140
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
SV+ AKVV D +TGRSKGYGFV+F +++ER++AM +MNG+YCS+RPMRI AATP+K
Sbjct: 141 SSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/207 (55%), Positives = 140/207 (67%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +++W+GDL WMDENYL F TGE ++ KVIRNKQ G SEGYGF+EF +HATAE+
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
LQ Y G MP+++Q FRLNWA GE+ + ++FVGDLA DVTD +L ETF +VY
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVY 197
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXX 262
SVK AKVV D TGRSKGYGFVRF D++E+ +AMT+MNG YCSSRPMR G A +K
Sbjct: 198 SSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLT 257
Query: 263 XXXXXXXXXXXXXPESDSTNTTVSFSA 289
ESD TNTT+ A
Sbjct: 258 MQPASYQNTQGNSGESDPTNTTIFVGA 284
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 27/183 (14%)
Query: 86 TVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
TV+VGDL + ++ L F + + KV+ ++ TG S+GYGFV F + + +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 145 NYAGVLMPN---------TDQPFRLNWATF--STGEKTSDNVSDLSIFVGDLAADVTDSL 193
G + +P + A++ + G + ++ +IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 194 LHETFAS----VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRP 249
L F V+ + A K GFV++ + QA++ +NG +
Sbjct: 294 LKSVFGQFGELVHVKIPAGKRC-----------GFVQYANRACAEQALSVLNGTQLGGQS 342
Query: 250 MRI 252
+R+
Sbjct: 343 IRL 345
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 140/178 (78%), Gaps = 2/178 (1%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +WMDEN+L+ CFA TGE+ S KVIRNKQTG EGYGF+EF SHA AE+V
Sbjct: 60 EIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Query: 143 LQNYAGVLMPN-TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
LQ + +P+ DQ FRLNWA+ S+G+K D+ D +IFVGDLAADVTD +L ETF +
Sbjct: 120 LQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRAS 178
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
YPSVK AKVV D TGR+KGYGFVRF D++E+ +AMT+MNGV CS+RPMRIG A +K
Sbjct: 179 YPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 86 TVWVGDLHHWMDENYLHRCF-ASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
T++VGDL + + L F AS + KV+ ++ TG ++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 145 NYAGVLMPNTDQPFRL--------------NWATFSTGEKTSDNVSDLSIFVGDLAADVT 190
GV P + +P R+ ++ + + G T ++ ++ ++FVG L A VT
Sbjct: 216 EMNGV--PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 191 DSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGD 229
D L F S Y + K+ K GFV+F +
Sbjct: 274 DDHLKNVF-SQYGEIVHVKIP------AGKRCGFVQFSE 305
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 237 bits (604), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 140/178 (78%), Gaps = 2/178 (1%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +WMDEN+L+ CFA TGE+ S KVIRNKQTG EGYGF+EF SHA AE+V
Sbjct: 60 EIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERV 119
Query: 143 LQNYAGVLMPN-TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
LQ + +P+ DQ FRLNWA+ S+G+K D+ D +IFVGDLAADVTD +L ETF +
Sbjct: 120 LQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETFRAS 178
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
YPSVK AKVV D TGR+KGYGFVRF D++E+ +AMT+MNGV CS+RPMRIG A +K
Sbjct: 179 YPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 86 TVWVGDLHHWMDENYLHRCF-ASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
T++VGDL + + L F AS + KV+ ++ TG ++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 145 NYAGVLMPNTDQPFRL--------------NWATFSTGEKTSDNVSDLSIFVGDLAADVT 190
GV P + +P R+ ++ + + G T ++ ++ ++FVG L A VT
Sbjct: 216 EMNGV--PCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 191 DSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPM 250
D L F S Y + K+ K GFV+F + + +A+ +NGV +
Sbjct: 274 DDHLKNVF-SQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 251 RI 252
R+
Sbjct: 327 RL 328
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/172 (63%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
K++W+GDL WMDENY+ FA +GE +S KVIRNK TG SEGYGF+EF SH+ AE+VLQ
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKT-SDNVSDLSIFVGDLAADVTDSLLHETFASVYP 203
Y G MP+T+Q FRLNWA GEK D +IFVGDLA +VTD +L +TF +VY
Sbjct: 120 TYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYG 179
Query: 204 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
SVK AKVV D TGRSKGYGFVRF D+NE+ +AMT+MNG YCS+RPMRIG A
Sbjct: 180 SVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA 231
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ T++VGDL + + L F + G + KV+ ++ TG S+GYGFV F +
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 143 LQNYAGVLMPNTDQPFRLNWATF-------------STGEKTSDN-VSDLSIFVGDLAAD 188
+ G + +P R+ A + G DN ++ +IFVG L A+
Sbjct: 213 MTEMNGQYC--STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDAN 270
Query: 189 VTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSR 248
VTD L F + K GFV++ + A++ +NG +
Sbjct: 271 VTDDELKSIFGQF-------GELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQ 323
Query: 249 PMRI 252
+R+
Sbjct: 324 SIRL 327
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 106/172 (61%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + E L F STG + S K+IR ++ YGFV ++ +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
+ G + QP ++NWA ++TG++ D S +IFVGDL+ +VTD+ L+++F SV+ S
Sbjct: 115 SLNGRHL--FGQPIKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDATLYQSF-SVFSS 169
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRS+G+GFV F + + A+ +MNG + SSR +R AT
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT 221
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+ G++H + E L FASTG I S K+IR ++ YGFV ++ A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
G + QP ++NWA ++TG++ D S +IFVGDL+ +VTD+ L ++F S + S
Sbjct: 119 TLNGRHI--FGQPMKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDAALFDSF-SAFNS 173
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRS+G+GFV F + + A+ +MNG + SSR +R AT
Sbjct: 174 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 38/196 (19%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VGDL + + L F++ S +V+ +++TG S G+GFV F + A+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 147 AGVLMPNTDQPFRLNWAT----FSTGEKTSDNVS-------------DLS---------- 179
G + + + R NWAT F + +SD S +LS
Sbjct: 210 NGKWV--SSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQ 267
Query: 180 ---IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 236
++VG+L+ +VT LH F ++ A V+ + R KG+GFVR+ +E + A
Sbjct: 268 FTTVYVGNLSPEVTQLDLHRLFYTL-----GAGVIEEVRVQRDKGFGFVRYNTHDEAALA 322
Query: 237 MTQMNG-VYCSSRPMR 251
+ N + SR +R
Sbjct: 323 IQMGNAQPFLFSRQIR 338
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 104/172 (60%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + E L FA TG + S K+IR +++ YGFV ++ +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
+ G + QP ++NWA +++G++ D S +IFVGDL+ +VTD++L F SVYP+
Sbjct: 110 SLNGRHL--FGQPIKVNWA-YASGQR-EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPT 164
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRS+G+GFV F + + A+ ++ G + SR +R AT
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 104/172 (60%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + E L FA TG + S K+IR +++ YGFV ++ +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
+ G + QP ++NWA +++G++ D S +IFVGDL+ +VTD++L F SVYP+
Sbjct: 110 SLNGRHL--FGQPIKVNWA-YASGQR-EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPT 164
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRS+G+GFV F + + A+ ++ G + SR +R AT
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWAT 216
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 102/175 (58%), Gaps = 11/175 (6%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+ G++H + E L FASTG I S K+IR ++ YGFV ++ A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFA---SV 201
G + QP ++NWA ++TG++ D S +IFVGDL+ +VTD+ L ++F+ S
Sbjct: 119 TLNGRHI--FGQPMKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
+ A+V++D TGRS+G+GFV F + + A+ +MNG + SSR +R AT
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 42/200 (21%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISS----IKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
++VGDL + + L F++ SS +V+ +++TG S G+GFV F + A+
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 143 LQNYAGVLMPNTDQPFRLNWAT----FSTGEKTSDNVS-------------DLS------ 179
+ G + + + R NWAT F + +SD S +LS
Sbjct: 210 INEMNGKWV--SSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 267
Query: 180 -------IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 232
++VG+L+ +VT LH F ++ A V+ + R KG+GFVR+ +E
Sbjct: 268 NNPQFTTVYVGNLSPEVTQLDLHRLFYTL-----GAGVIEEVRVQRDKGFGFVRYNTHDE 322
Query: 233 RSQAMTQMNG-VYCSSRPMR 251
+ A+ N + SR +R
Sbjct: 323 AALAIQMGNAQPFLFSRQIR 342
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 6/173 (3%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
++ TV+VG L + E L F G + ++ V +++ T L + YGF+E+ S A+
Sbjct: 23 QDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYA 82
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
++ + + +P R+N A S +K+ D ++L F+G+L DV + LL++TF++
Sbjct: 83 IKVLNMIKL--HGKPIRVNKA--SQDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFG 136
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
K++ D +TG S+G+GF+ + A+ M G Y S+R + + A
Sbjct: 137 VIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E ++VG+L + + + L + F G + ++++ +K T S G+GFV S A++
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 143 LQNYAGVLMPNTDQ----PFRLNWATFSTG-------EKTSDNV-----SDLSIFVGDLA 186
+Q M N+ Q ++N+ G K DN S ++ G+L
Sbjct: 174 MQ------MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLG 227
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCS 246
++T L + F P V AKV+++ NTGRS+G+GF+ F A+ MNGV
Sbjct: 228 WNLTSQGLKDAFGD-QPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 247 SRPMRIGAATPRK 259
R +R+ A+ R+
Sbjct: 287 GRALRLNLASERE 299
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 28/212 (13%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL 143
N +++VGDL + ++ L F G + +++V R+ T S GYG+V F + A + +
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 144 Q--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
Q NY +P +P R+ ++ + S +IF+ +L + LH+TF+S
Sbjct: 95 QELNY----IPLYGKPIRVMYSHRDPSVRRS---GAGNIFIKNLDESIDHKALHDTFSS- 146
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXX 261
+ ++ + KV D+ +G+SKGYGFV++ ++ +A+ ++NG+ + + + +G R+
Sbjct: 147 FGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ-- 203
Query: 262 XXXXXXXXXXXXXXPESDSTNTTVSFSAYFIK 293
E DST F+ ++K
Sbjct: 204 ---------------ERDSTANKTKFTNVYVK 220
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATA 139
N + V+V +L ++ L F G+I+S V+++ + G S+G+GFV F + A
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDA 268
Query: 140 EKVLQN-----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAAD 188
+ +++ Y G +++ L ++ +D +++V +L
Sbjct: 269 ARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPS 328
Query: 189 VTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSR 248
++D L E F S + +V ++KV+ D N G SKG GFV F E ++AM+Q++G S+
Sbjct: 329 ISDEKLKEIF-SPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESK 386
Query: 249 PMRIGAA 255
P+ + A
Sbjct: 387 PLYVAIA 393
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 163 ATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGY 222
A ++G T+ + S++VGDL +VTDS L + F + +V +V D T RS GY
Sbjct: 21 APATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG-TVVTVRVCRDLVTRRSLGY 79
Query: 223 GFVRFGDDNERSQAMTQMNGVYCSSRPMRI 252
G+V F + + ++A+ ++N + +P+R+
Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRV 109
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL 143
N +++VGDL ++E++L F + +++V R+ T S GY +V F + A + +
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 116
Query: 144 Q--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
+ NYA P D+P R+ + + S + +F+ +L A + + L+ETF+S
Sbjct: 117 ESLNYA----PIRDRPIRIMLSNRDPSTRLSGKGN---VFIKNLDASIDNKALYETFSS- 168
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+ ++ + KV D GRSKGYGFV+F + A+ ++NG+ + + + +G
Sbjct: 169 FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V++ +L +D L+ F+S G I S KV + G S+GYGFV+F TA+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNV--SDLSIFVGDLAADVTDSLLHETFASVYPS 204
G+L+ N Q F ++ ++ S +++V +L ++TD L +TF Y
Sbjct: 207 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGK-YGD 264
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
+ +A VV +G S+ +GFV F + A+ +MNG+ + +G A
Sbjct: 265 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 314
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L + ++ L + F G+ISS V+++ Q+G S +GFV F S A ++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 146 ----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLH 195
Y G +D+ L + + ++++ +L V D L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
E F S Y +V + KV+ ++ G S+G+GFV + + E AM +MNG +P+ + A
Sbjct: 360 EMF-SEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 93/172 (54%), Gaps = 12/172 (6%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL 143
N +++VGDL ++E++L F + +++V R+ T S GY +V F + A + +
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 116
Query: 144 Q--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
+ NYA P D+P R+ + + S + +F+ +L A + + L+ETF+S
Sbjct: 117 ESLNYA----PIRDRPIRIMLSNRDPSTRLSGKGN---VFIKNLDASIDNKALYETFSS- 168
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+ ++ + KV D GRSKGYGFV+F + A+ ++NG+ + + + +G
Sbjct: 169 FGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 219
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V++ +L +D L+ F+S G I S KV + G S+GYGFV+F TA+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNV--SDLSIFVGDLAADVTDSLLHETFASVYPS 204
G+L+ N Q F ++ ++ S +++V +L ++TD L +TF Y
Sbjct: 207 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGK-YGD 264
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
+ +A VV +G S+ +GFV F + A+ +MNG+ + +G A
Sbjct: 265 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 314
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L + ++ L + F G+ISS V+++ Q+G S +GFV F S A ++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 146 ----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLH 195
Y G +D+ L + + ++++ +L V D L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
E F S Y +V + KV+ ++ G S+G+GFV + + E AM +MNG +P+ + A
Sbjct: 360 EMF-SEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 25/194 (12%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VG+L +D L + F S G + ++VI +K TG S G+GFV S + E Q +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 147 AGVLMPNTDQPFRLNWAT--------FSTGEKTSDNVSDLS--------------IFVGD 184
G + +P R+N FS G ++S S ++VG+
Sbjct: 153 NGYEL--DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210
Query: 185 LAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVY 244
L+ V D L F S V A+V++D ++GRSKG+GFV + E A+ ++G
Sbjct: 211 LSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 245 CSSRPMRIGAATPR 258
R +R+ A R
Sbjct: 270 LDGRQIRVSEAEAR 283
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 176 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 235
+DL +FVG+L +V + L + F S +V+ +V++D TGRS+G+GFV +E
Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAG-NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 236 AMTQMNGVYCSSRPMRIGAATP 257
A Q NG RP+R+ A P
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPP 169
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 22/187 (11%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E ++VG+L + ++ L F G + +VI N++T S G+GFV S AE
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 143 LQNYA-----GVLM------PNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTD 191
++ + G L+ P +P R ++VG+L DV +
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPA----------FRVYVGNLPWDVDN 257
Query: 192 SLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMR 251
L + F S + V A+VV+D TGRS+G+GFV D +E ++A++ ++G R +R
Sbjct: 258 GRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
Query: 252 IGAATPR 258
+ A R
Sbjct: 317 VNVAEER 323
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 13/185 (7%)
Query: 81 NIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAE 140
N ++ V+V +L + ++ LH F+ G +SS+ V+R+ G S G+GFV F + A+
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAK 256
Query: 141 KVLQNYAGVLMPNT----------DQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVT 190
K +++ G+ + + D+ + FS N+ +++V +L+ +
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMN 316
Query: 191 DSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPM 250
++ L E F Y + +AKV+ N GRSKG+GFV F + E QA +NG +P+
Sbjct: 317 ETRLREIFG-CYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Query: 251 RIGAA 255
+ A
Sbjct: 375 VVRVA 379
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ- 144
+++VGDL + E L F+ + S+ + RN TG S Y ++ F S +A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 145 -NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYP 203
N++ + + R+ W+ + +++V +L + +T S L F +
Sbjct: 82 LNHSDL----KGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCP-FG 136
Query: 204 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
S+ + KVV G+SKG+GFV+F + A + ++G
Sbjct: 137 SILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHG 173
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 12/172 (6%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL 143
N +++ GDL + E +L F + S++V R+ Q S GY ++ F + A + +
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAM 106
Query: 144 Q--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
+ NY P D+P R+ + + S + IF+ +L A + + L ETF+S
Sbjct: 107 EALNYT----PLFDRPIRIMLSNRDPSTRLSGKGN---IFIKNLDASIDNKALFETFSS- 158
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+ ++ + KV D TGRSKGYGFV+F + A+ ++NG+ + + + +G
Sbjct: 159 FGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVG 209
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 28/187 (14%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V +L + E+ L + F G ISS V+R+ Q+G S +GFV F A ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDL------------------SIFVGDLAAD 188
G+ + + + +K S+ +L ++++ +L
Sbjct: 290 NGISLGD-------DVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 342
Query: 189 VTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSR 248
V D L E F S Y +V ++KV+ + G S+G+GFV + + E +A+++MNG +
Sbjct: 343 VDDEKLKEMF-SEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRK 400
Query: 249 PMRIGAA 255
P+ I A
Sbjct: 401 PLYIALA 407
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 7/168 (4%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN 145
+++VGDL + ++ L F G++ S++V R+ T S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
M + R+ ++ + S V + IF+ +L + LHETF++ P +
Sbjct: 106 LN--FMALNGRAIRVMYSVRDPSLRKS-GVGN--IFIKNLDKSIDHKALHETFSAFGP-I 159
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+ KV D +G+SKGYGFV++ D A+ ++NG+ + + + +G
Sbjct: 160 LSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 78 SNNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHA 137
S ++ V+V +L + + L++ F G +S ++R+ + G S+G+GFV F +
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSD 275
Query: 138 TAEKVLQN-----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLA 186
A + + + G +++ L + ++ +D +++V +L
Sbjct: 276 DAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLD 335
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCS 246
VTD L E FA + ++ + KV+ D +G S+G GFV F E ++A+T+MNG
Sbjct: 336 ESVTDDKLREHFAP-FGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 247 SRPMRIGAA 255
++P+ + A
Sbjct: 394 TKPLYVALA 402
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 7/168 (4%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN 145
+++VGDL + ++ L F G++ S++V R+ T S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
M + R+ ++ + S V + IF+ +L + LHETF++ P +
Sbjct: 106 LN--FMALNGRAIRVMYSVRDPSLRKS-GVGN--IFIKNLDKSIDHKALHETFSAFGP-I 159
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+ KV D +G+SKGYGFV++ D A+ ++NG+ + + + +G
Sbjct: 160 LSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG 206
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 78 SNNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHA 137
S ++ V+V +L + + L++ F G +S ++R+ + G S+G+GFV F +
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSD 275
Query: 138 TAEKVLQN-----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLA 186
A + + + G +++ L + ++ +D +++V +L
Sbjct: 276 DAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLD 335
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCS 246
VTD L E FA + ++ + KV+ D +G S+G GFV F E ++A+T+MNG
Sbjct: 336 ESVTDDKLREHFAP-FGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 247 SRPMRIGAA 255
++P+ + A
Sbjct: 394 TKPLYVALA 402
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E ++VG+L + +D L F G + +VI N+ T S G+GFV + AEK
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGE--------KTSDNVSD--LSIFVGDLAADVTDS 192
++ + F +N + + V D I+VG+L DV
Sbjct: 171 VEKF---------NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSG 221
Query: 193 LLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRI 252
L F S + V A+VV D TGRS+G+GFV+ ++NE + A+ ++G R +++
Sbjct: 222 RLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
Query: 253 GAATPR 258
A R
Sbjct: 281 NVAEER 286
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 4/173 (2%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G LH ++ F GEI+ ++R++ TG G+GF+ F + +KV+++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
+ N Q G S ++ IFVG + + VT+ L + FA Y +V
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK-YGNVV 136
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
+V+ D T RS+G+GFV F + + +++ N + + + I A P+K
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKK 189
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 4/169 (2%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++V +L +D LH F+ G I S KV + G S GYGFV+F + +A+ ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
G ++ N Q F + E +D + +++V +L+ TD L TF Y S+
Sbjct: 195 NGKVL-NDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQ-YGSIS 252
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
+A V+ D + G+S+ +GFV F + + ++A+ +NG + +G A
Sbjct: 253 SAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ- 144
+++VGDL + ++ L+ F ++ S++V R+ T S GYG+V + + AEK +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 145 -NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYP 203
NY+ + + R+ T+S+ + ++ ++FV +L V + LHE F+
Sbjct: 107 LNYSYL----NGKMIRI---TYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCG- 158
Query: 204 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
++ + KV D + G+S+GYGFV+F ++ A+ ++NG + + + +G
Sbjct: 159 TIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG 207
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 16/181 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L ++ L F G ISS V+R+ G S +GFV F + A + ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 146 ----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSD-LSIFVGDLAADVTDSLL 194
Y G +++ L+ + G N D L+++V +L VTD L
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSR-RYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKL 344
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
E FA + ++ + KV+ D +G SKG GFV F +E S+ + +MNG +P+ +
Sbjct: 345 RELFAE-FGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 255 A 255
A
Sbjct: 403 A 403
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 176 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 235
+D +F GDL +V D +L + FA +P+ AKV+ D TG++KGYGFV F + + +
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFAR-FPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAA 193
Query: 236 AMTQMNGVYCSSRPMRI 252
A+ +MNG Y +RP+++
Sbjct: 194 ALKEMNGKYVGNRPIKL 210
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VG L + F GEI+ ++++++TG G+GFV + + +KV+Q+
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
++ + T G +S++ IFVG + + V D E F + +K
Sbjct: 104 HIIIGKQVEI-----KRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ-FGELK 157
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
+++ D +TGRS+G+GFV + ++ + + N + S + I A P+K
Sbjct: 158 EHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL 143
N ++ G+L + +D L + ++V+ N+ TG S G+ FV + ++
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 144 QNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDL------SIFVGDLAADVTDSLLHET 197
N G + ++N+A +K N L +FVG+L+ VT L
Sbjct: 144 DNLDGT--EYLGRALKVNFA-----DKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGA 196
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
F V A+VVFD +TGRS+GYGFV + E A+ ++G R +R+ A
Sbjct: 197 FREC-GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQG 255
Query: 258 RK 259
+K
Sbjct: 256 KK 257
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V +L +D L F++ G++ S KV R+ +G+S+GYGFV+FYS + +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
G L+ N ++ F + + + +++V +L TD+ L F + +
Sbjct: 92 NGTLIRNQ----HIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGE-FGEIT 146
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
+A V+ D G+S+ +GFV F A+ +MNGV + + +G A
Sbjct: 147 SAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V +L + L R F GEI+S V+++ + G S +GFV F A ++
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 147 AGVLMPNTDQPFRLNWATFSTG-----------EKTSDNVSD---LSIFVGDLAADVTDS 192
GV++ ++ + A T EK ++ ++++V +L V ++
Sbjct: 180 NGVVV--DEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 193 LLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRI 252
L E F S + ++ + KV+ +N G SKG GFV F E S+AM +MNG ++P+ +
Sbjct: 238 KLEELF-SEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
Query: 253 GAA 255
A
Sbjct: 296 SLA 298
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G LH ++ F GEI+ ++R++ TG G+GF+ F + +KV+++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
+ N Q G S ++ IFVG + + VT+ L + FA Y +V
Sbjct: 81 HVI---NGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAK-YGNVV 136
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMN 241
+V+ D T RS+G+GFV F + + +++ N
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DEN L F++ GE+ + V+R K TG G+GFV F A ++VLQ+
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 147 AGV---------LMPNTDQPFRLNWATFSTGEK--TSDNVSDLSIFVGDLAADVTDSLLH 195
+ M +Q TF+ + NV IFVG L +T
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
F + P V A ++ D T R +G+GFV F
Sbjct: 128 AYFETYGP-VSDAVIMIDQTTQRPRGFGFVSF 158
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 86/168 (51%), Gaps = 7/168 (4%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN 145
+++VGDLH + E L+ FA ++S+++ ++ +G S YG+ F S A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
L+ + R+ W+ + + + V + +FV +L VT+++L + F + ++
Sbjct: 85 KNNSLL--NGKMIRVMWSVRAPDAR-RNGVGN--VFVKNLPESVTNAVLQDMFKK-FGNI 138
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+ KV G+S+GYGFV+F ++ A+ +N + + + +G
Sbjct: 139 VSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG 185
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 28/183 (15%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L + L F G I S KV + G S GYGFV+F A +Q
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 146 ----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLH 195
Y G M TD+ EK ++ +++ +L ADV++ LL
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR--------VKPEEKYTN------LYMKNLDADVSEDLLR 218
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
E FA + + + + D N +GY FV F + + +A +NG S+ + +G A
Sbjct: 219 EKFAE-FGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRA 276
Query: 256 TPR 258
+
Sbjct: 277 QKK 279
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VG + DE+ L F + GE+S V+R+K TG G+GFV F + ++VLQ
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 147 AGV---------LMPNTDQPFRLNWATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLH 195
+ M +Q +T + + + + IFVG L +TD
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFR 127
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
+ F VY V +++D T R +G+GFV F
Sbjct: 128 QYF-EVYGPVTDVAIMYDQATNRPRGFGFVSF 158
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 79 NNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHAT 138
N+N++ K ++V +L M N + F G ++++++IR K G + G+ FV S
Sbjct: 90 NSNLKRK-LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEE 147
Query: 139 AEKVLQNYAGVLMPNTDQPFRLNWATFSTGEK--TSDNVSDL----------SIFVGDLA 186
A+ + + + R+ +F+ K T + +DL ++V +LA
Sbjct: 148 AQAAIDKFDTFQVSG-----RIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLA 202
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCS 246
+ L E F + + +A+VVF GRS GYGFV F E A+T++NG
Sbjct: 203 WKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIM 262
Query: 247 SRPMRI 252
RP+ +
Sbjct: 263 GRPITL 268
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 147 ---------AGVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADV 189
A +P DQ P L G +T IFVG L + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSI 121
Query: 190 TDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
T+ F + ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 122 TEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 147 ---------AGVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADV 189
A +P DQ P L G +T IFVG L + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSI 121
Query: 190 TDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
T+ F + ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 122 TEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 147 ---------AGVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADV 189
A +P DQ P L G +T IFVG L + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSI 121
Query: 190 TDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
T+ F + ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 122 TEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 24/170 (14%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L F++ G++ ++R++ TG + G+GF+ F +E+V+ +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 147 ---------AGVLMPNTDQ--------PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADV 189
A +P DQ P L G +T IFVG L + +
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGLPSSI 121
Query: 190 TDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
T+ F + ++ V++D NT R +G+GF+ F D+ + + +
Sbjct: 122 TEEEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+F+G L+ D+ L + FA + V AKV+ D TGRS+G+GFV F D+ + A+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G + R +R+ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 9/158 (5%)
Query: 105 FASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWAT 164
F GE+ ++ ++ TG G+GFV F A AEKVL+ + D+ L T
Sbjct: 86 FGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVI----DDRKVDLK-RT 140
Query: 165 FSTGEKTSD--NVSDL-SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKG 221
G+K +D VS IFVG L + + L F VY + ++++D +TGRS+G
Sbjct: 141 LPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFC-VYGDIIEHQIMYDHHTGRSRG 199
Query: 222 YGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
+GFV F ++ + + + + I A P++
Sbjct: 200 FGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKR 237
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+N +++G + +E L F+S GE+ +++++ TG + G+GFV F A AE V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 143 L---QNYAGVL------MPNTDQPFRLNWATFSTGEKTSDNVSDL-SIFVGDLAADVTDS 192
+ N G L +P DQ +N + S+ + + IFVG L + VT+S
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 193 LLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
+T+ + + V++D NT R +G+GF+ +
Sbjct: 123 DF-KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+N +++G + +E L F+S GE+ +++++ TG + G+GFV F A AE V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 143 L---QNYAGVL------MPNTDQPFRLNWATFSTGEKTSDNVSDL-SIFVGDLAADVTDS 192
+ N G L +P DQ +N + S+ + + IFVG L + VT+S
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 193 LLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
+T+ + + V++D NT R +G+GF+ +
Sbjct: 123 DF-KTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+FVG L+ DS L + F S + V A V+ D TGRS+G+GFV F ++ + A+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+FVG L+ DS L + F S + V A V+ D TGRS+G+GFV F ++ + A+ +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G + R +R+ AT R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 38/202 (18%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L F G++ ++R++ TG + G+GF+ F + AE+V+ +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 147 ---------AGVLMPNTDQ--------PFRL---NWATFSTGEKTSDNVSDLSIFVGDLA 186
A +P DQ P L + G +T IFVG L
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK------KIFVGGLP 130
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT------QM 240
+ +T++ F + ++ V++D NT R +G+GF+ F D+E S M ++
Sbjct: 131 SSITEAEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITF--DSEESVDMVLHKTFHEL 187
Query: 241 NGVYCSSR---PMRIGAATPRK 259
NG + P + + TP +
Sbjct: 188 NGKMVEVKRAVPKELSSTTPNR 209
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 38/202 (18%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L F G++ ++R++ TG + G+GF+ F + AE+V+ +
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 147 ---------AGVLMPNTDQ--------PFRL---NWATFSTGEKTSDNVSDLSIFVGDLA 186
A +P DQ P L + G +T IFVG L
Sbjct: 74 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK------KIFVGGLP 127
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT------QM 240
+ +T++ F + ++ V++D NT R +G+GF+ F D+E S M ++
Sbjct: 128 SSITEAEFKNYFDQ-FGTIADVVVMYDHNTQRPRGFGFITF--DSEESVDMVLHKTFHEL 184
Query: 241 NGVYCSSR---PMRIGAATPRK 259
NG + P + + TP +
Sbjct: 185 NGKMVEVKRAVPKELSSTTPNR 206
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
++VG + E + F G + + +I++K+TG +G FV++ + A++ ++
Sbjct: 47 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 106
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
+ + +P P ++ +A GE+ + +FVG L T+ + E F + V
Sbjct: 107 HNQITLPGGTGPVQVRYA---DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQ-FGHV 162
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 259
+ ++ D +S+G GFV++ A+ +NG Y ++P+ + A P++
Sbjct: 163 EDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 218
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
++VG + E + F G + + +I++K+TG +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
+ + +P P ++ +A GE+ + +FVG L T+ + E F + V
Sbjct: 182 HNQITLPGGTGPVQVRYA---DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQ-FGHV 237
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 259
+ ++ D +S+G GFV++ A+ +NG Y ++P+ + A P++
Sbjct: 238 EDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
++VG + E + F G + + +I++K+TG +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
+ + +P P ++ +A GE+ + +FVG L T+ + E F + V
Sbjct: 182 HNQITLPGGTGPVQVRYA---DGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQ-FGHV 237
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 259
+ ++ D +S+G GFV++ A+ +NG Y ++P+ + A P++
Sbjct: 238 EDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 82 IENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEK 141
+E+ +++G + E+ L F S GE+ +++++ TG + G+GFV F AE+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 142 VL---QNYAGVLMPNTDQPFRLNWATF----STGEKTSDNVSDLSIFVGDLAADVTDSLL 194
V+ G ++ R + F S+ + + + IFVG LA+ VT++
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
+ FA + + V++D T R +G+GF+ + D E + Q + + + +
Sbjct: 123 KKYFAQ-FGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 255 ATPR 258
A P+
Sbjct: 181 AVPK 184
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 9/184 (4%)
Query: 82 IENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEK 141
+E+ +++G + E+ L F S GE+ +++++ TG + G+GFV F AE+
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 142 VL---QNYAGVLMPNTDQPFRLNWATF----STGEKTSDNVSDLSIFVGDLAADVTDSLL 194
V+ G ++ R + F S+ + + + IFVG LA+ VT++
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
+ FA + + V++D T R +G+GF+ + D E + Q + + + +
Sbjct: 123 KKYFAQ-FGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 255 ATPR 258
A P+
Sbjct: 181 AVPK 184
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 177 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 236
DL +FVG+L+ +V + L + F S +V+ +V++D TGRS+G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 237 MTQMNGVYCSSRPMRIGAATP 257
Q NG RP+R+ A P
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPP 177
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
++VG+L+ V D L F + V A+V++D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 240 MNGVYCSSRPMRIGAATPR 258
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 177 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 236
DL +FVG+L+ +V + L + F S +V+ +V++D TGRS+G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 237 MTQMNGVYCSSRPMRIGAATP 257
Q NG RP+R+ A P
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPP 177
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
++VG+L+ V D L F + V A+V++D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 240 MNGVYCSSRPMRIGAATPR 258
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 177 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 236
DL +FVG+L+ +V + L + F S +V+ +V++D TGRS+G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAG-NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 237 MTQMNGVYCSSRPMRIGAATP 257
Q NG RP+R+ A P
Sbjct: 157 AQQFNGYEFEGRPLRVNAGPP 177
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
++VG+L+ V D L F + V A+V++D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 240 MNGVYCSSRPMRIGAATPR 258
+NG R +R+ A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
+ V++G++ + L + G + ++V+ +K +G S +GF S A V++
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGE-----KTSDNV---SDLSIFVGDLAADVTDSLLHE 196
G + + + ++ ++ D+ S ++VG+LA VT +L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 197 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
F S V +AKV T +S G+GFV F + + A+ +N + +R+ A
Sbjct: 196 LF-SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 9/179 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
+ V++G++ + L + G + ++V+ +K +G S +GF S A V++
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGE-----KTSDNV---SDLSIFVGDLAADVTDSLLHE 196
G + + + ++ ++ D+ S ++VG+LA VT +L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 197 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
F S V +AKV T +S G+GFV F + + A+ +N + +R+ A
Sbjct: 196 LF-SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+F+G L+ V + L + F+S + V ++ +D +GRS+G+GFV F ++ + A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G RP+RI A R
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ +TV+ + E ++ F+ G++ +++I ++ + S+G G++EFY +
Sbjct: 166 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 225
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNV-----SDLSIFVGDLAADVTDSLLHET 197
+ +G L + + A + + S V +D ++VG+L ++++ L +
Sbjct: 226 IA-LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQI 284
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
F + P V+ ++ D TG+ KG+GF++F A +NG
Sbjct: 285 FEAFGP-VELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNG 328
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 181 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 240
FVG LA D L TF S + V +K++ D +GRS+G+GFV F D+ A+ +M
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 241 NGVYCSSRPMRIGAATPR 258
NG R + + A R
Sbjct: 68 NGKELDGRVITVNEAQSR 85
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 181 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 240
FVG LA D L TF S + V +K++ D +GRS+G+GFV F D+ A+ +M
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 241 NGVYCSSRPMRIGAA 255
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 181 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 240
FVG LA D L TF S + V +K++ D +GRS+G+GFV F D+ A+ +M
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 241 NGVYCSSRPMRIGAA 255
NG R + + A
Sbjct: 68 NGKELDGRVITVNEA 82
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V++G L + E L GEI +++++++ +G S+GY FV F + A+K ++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE-- 175
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLHETFASVYPS 204
L+ F + ++S LS +F+G++ + T+ + V P
Sbjct: 176 ------------ELHSKEFKASSTANCSLS-LSNRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 205 VKAAKVVFDA-NTGRSKGYGFVRF 227
V+ +++ D NT R++G+ FV +
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLY 246
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
+++G + + MDE+ L F GE+ +VI +++TG S G+GFV F S A +Q
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 23/194 (11%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VG + E L + F+ G + V + K TG G+GFV F + K L++
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 147 AGVLMPNTD------------QPFRLNWATFSTG-------EKTSDNVSDLS--IFVGDL 185
+L D QPF + + E +S+ V+ + IFVG L
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGL 127
Query: 186 AADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYC 245
+++ T+ F + V+ D T R +G+GFV + D + + + Q N
Sbjct: 128 SSNTTEEEFKSYFER-FGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQSNFHEL 185
Query: 246 SSRPMRIGAATPRK 259
S + + + A P++
Sbjct: 186 SDKRVEVKRAIPKE 199
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 25/177 (14%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL 143
+KT++ +L ++ + F GE+ ++ N+ G G+G VEF S A+K L
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
Query: 144 QNYAGVLMPNTDQPFRLNWAT--FSTGEKTS------------DNVSDLSIFV----GDL 185
+ + L+ + RL+ A GE+ + D + IFV L
Sbjct: 356 EFHGRPLL---GREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASL 412
Query: 186 AADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
+ D + L E F+S +K V D +TG SKG ++ F + E++ ++NG
Sbjct: 413 SEDDIKNTLREHFSSCG-EIKNVSVPIDRDTGNSKGIAYLEFSEGKEKA---LELNG 465
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 181 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 240
FVG LA D L FA Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFAQ-YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 241 NGVYCSSRPMRIGAA 255
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 181 FVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQM 240
FVG LA D L FA Y V +K++ D TGRS+G+GFV F D+ A+ M
Sbjct: 11 FVGGLAWATDDRALETAFAQ-YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 241 NGVYCSSRPMRIGAA 255
NG R + + A
Sbjct: 70 NGQDLDGRSITVNEA 84
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
++VG+L+ V D L F V A+V++D ++GRSKG+GFV E +A+
Sbjct: 280 LYVGNLSWGVDDMALENLFNE-QGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 240 MNGVYCSSRPMRIGAATPR 258
+NG R +R+ A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 175 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 234
+S IFVG ++ + L E F S Y V AK++ D TGRS+G+ FV F E S
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEAS 89
Query: 235 QAMTQMNGVYCSSRPMRIGAAT 256
AM Q++G R +R+ AT
Sbjct: 90 NAM-QLDGQDLHGRRIRVNYAT 110
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
IFVG L+ +VTD L F S + + +++ + +TGRS+G+GF+ F D +++ +
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 240 MNGVYCSSRPMRIGAATPR 258
M+G R + + A P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86