Miyakogusa Predicted Gene

Lj5g3v0001030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0001030.1 Non Chatacterized Hit- tr|I1M8K7|I1M8K7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55795
PE,98.08,0,seg,NULL; JAB1/MPN domain,NULL; no description,NULL;
JAB,JAB1/Mov34/MPN/PAD-1; MitMem_reg,Rpn11/EIF3,CUFF.52434.1
         (312 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...   572   e-164
AT5G23540.2 | Symbols:  | Mov34/MPN/PAD-1 family protein | chr5:...   488   e-138
AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |...   125   5e-29
AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...   121   7e-28
AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |...   121   7e-28
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3 ...    55   8e-08
AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3 ...    54   1e-07
AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3 ...    52   4e-07
AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3 ...    52   5e-07

>AT5G23540.1 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7937772-7939339 FORWARD LENGTH=308
          Length = 308

 Score =  572 bits (1475), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/309 (89%), Positives = 283/309 (91%), Gaps = 1/309 (0%)

Query: 4   MERLQRMFAGTGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 63
           MERLQR+F G GG LGH  PDSPTLD+SEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
Sbjct: 1   MERLQRIF-GAGGGLGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 59

Query: 64  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 123
           FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC
Sbjct: 60  FVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGC 119

Query: 124 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSN 183
           WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSN
Sbjct: 120 WLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSN 179

Query: 184 LGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLKRFDSHSKT 243
           LGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLTL+RFD+HSKT
Sbjct: 180 LGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKT 239

Query: 244 NEQTVQEMLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 303
           NEQTVQEMLSLA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTL
Sbjct: 240 NEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTL 299

Query: 304 GMMLDTVVF 312
           G MLDTVVF
Sbjct: 300 GTMLDTVVF 308


>AT5G23540.2 | Symbols:  | Mov34/MPN/PAD-1 family protein |
           chr5:7938109-7939339 FORWARD LENGTH=259
          Length = 259

 Score =  488 bits (1255), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/259 (90%), Positives = 238/259 (91%)

Query: 54  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 113
           MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG
Sbjct: 1   MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 60

Query: 114 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML 173
           WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+ML
Sbjct: 61  WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIML 120

Query: 174 GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLT 233
           GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR                WTDGLT
Sbjct: 121 GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLT 180

Query: 234 LKRFDSHSKTNEQTVQEMLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSN 293
           L+RFD+HSKTNEQTVQEMLSLA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSN
Sbjct: 181 LRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSN 240

Query: 294 LMSSNIVQTLGMMLDTVVF 312
           LMSSNIVQTLG MLDTVVF
Sbjct: 241 LMSSNIVQTLGTMLDTVVF 259


>AT1G71230.1 | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B |
           chr1:26852560-26854255 FORWARD LENGTH=358
          Length = 358

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 92/141 (65%), Gaps = 14/141 (9%)

Query: 32  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 91
           ++V IS+LALLKM+ H R+G  +E+MGLM G+  D  T+ V+D FA+P  GT   V A D
Sbjct: 57  KRVKISALALLKMVVHARSGGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQD 115

Query: 92  HVF-------QTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAV 144
             +       QTN L      GR E VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +
Sbjct: 116 DAYEYMVEYSQTNKL-----AGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFL 170

Query: 145 AVVVDPIQSVK-GKVVIDAFR 164
           AVV+DP ++V  GKV I AFR
Sbjct: 171 AVVIDPTRTVSAGKVEIGAFR 191


>AT1G22920.2 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109998-8111895 REVERSE LENGTH=351
          Length = 351

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 4/136 (2%)

Query: 32  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 91
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 92  HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVD 149
             ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+D
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175

Query: 150 PIQSVK-GKVVIDAFR 164
           P ++V  GKV I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191


>AT1G22920.1 | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A |
           chr1:8109882-8111895 REVERSE LENGTH=357
          Length = 357

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 4/136 (2%)

Query: 32  EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVD 91
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 92  HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVD 149
             ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+D
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175

Query: 150 PIQSVK-GKVVIDAFR 164
           P ++V  GKV I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191


>AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=223
          Length = 223

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 9/118 (7%)

Query: 54  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 113
           +E  G  L  F++     V  +    Q  T  S +A++ V   ++     Q  R    VG
Sbjct: 71  LETCG-TLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSI-----QNERELYPVG 124

Query: 114 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTM 171
           W H+HP  GC++S VD++T  S++ +   A A+VV P  S K   +   F+L +P  M
Sbjct: 125 WIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---FKLTDPGGM 179


>AT1G10840.1 | Symbols: TIF3H1 | translation initiation factor 3
           subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337
          Length = 337

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 34  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV 93
           V I  LA+LK++KH +   P  V G +LG  V    + V + F  P       +EA    
Sbjct: 25  VQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGS-VLEVTNCFPFPVRDDDEEIEADGAN 83

Query: 94  FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQS 153
           +Q  M+  L++       VGWY S    G + +   I T  +++   +R V ++ DP ++
Sbjct: 84  YQLEMMRCLREVNVDNNTVGWYQSTV-LGSYQTVELIETFMNYQENIKRCVCIIYDPSKA 142

Query: 154 VKGKVVIDAFRL 165
             G + + A +L
Sbjct: 143 DLGVLALKALKL 154


>AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=222
          Length = 222

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 10/118 (8%)

Query: 54  MEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 113
           +E  G  L  F++     V  +    Q  T  S +A++ V   ++     Q  R    VG
Sbjct: 71  LETCG-TLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSI-----QNERELYPVG 124

Query: 114 WYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTM 171
           W H+HP  GC++S VD++T  S++ +   A A+VV P  S    +    F+L +P  M
Sbjct: 125 WIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSNYGI----FKLTDPGGM 178


>AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503907-3505190 FORWARD
           LENGTH=166
          Length = 166

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 104 QTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAF 163
           Q  R    VGW H+HP  GC++S VD++T  S++ +   A A+VV P  S K   +   F
Sbjct: 58  QNERELYPVGWIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---F 114

Query: 164 RLINPQTM 171
           +L +P  M
Sbjct: 115 KLTDPGGM 122