Miyakogusa Predicted Gene

Lj4g3v3116180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3116180.1 CUFF.52709.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12800.1 | Symbols: PSAL | photosystem I subunit l | chr4:752...   271   3e-73

>AT4G12800.1 | Symbols: PSAL | photosystem I subunit l |
           chr4:7521469-7522493 FORWARD LENGTH=219
          Length = 219

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/218 (66%), Positives = 160/218 (73%), Gaps = 5/218 (2%)

Query: 2   AAASPMASQLKSTFTRPS----LVTPKXXXXXXXXXXXXXRRQFTFTVKAIQSEKPTYQV 57
           A+ASPMASQL+S+F+  S    L  PK             +R  +FTV+A++S+K T+QV
Sbjct: 3   ASASPMASQLRSSFSSASLSQRLAVPKGISGAPFGVSPT-KRVSSFTVRAVKSDKTTFQV 61

Query: 58  IQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVK 117
           +QPINGDPFIGSLETPVTSSPL+AWYLSNLP YRTAVNPLLRGVEVGLAHGF LVGPFVK
Sbjct: 62  VQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVK 121

Query: 118 AGPLRNTEYXXXXXXXXXXXXXXXXXXCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQL 177
           AGPLRNT Y                  CLTIYGISSF EG+PS APSLTLTGRKK PDQL
Sbjct: 122 AGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQL 181

Query: 178 QTADGWAKXXXXXXXXXISGVTWAYFLLYVLDLPYYFK 215
           QTADGWAK         ISGVTWAYFLLYVLDLPY+ K
Sbjct: 182 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219