Miyakogusa Predicted Gene
- Lj4g3v3114830.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3114830.1 tr|J7JYT7|J7JYT7_LOTJA NARROW ORGAN 1 OS=Lotus
japonicus GN=NAO1 PE=2 SV=1,91.26,0,no description,Homeodomain-like;
seg,NULL; Homeobox,Homeodomain; HOMEOBOX_2,Homeodomain;
Homeodomain,gene.g58176.t1.1
(336 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:... 189 2e-48
AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superf... 112 4e-25
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:... 106 2e-23
AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like super... 106 2e-23
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:... 103 2e-22
AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:... 102 3e-22
AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superf... 102 5e-22
AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 | chr5:... 94 2e-19
AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |... 77 2e-14
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:1434... 75 8e-14
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related ho... 68 7e-12
AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox... 64 2e-10
AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr... 61 1e-09
AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 | chr... 61 1e-09
AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr... 60 1e-09
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | chr... 60 2e-09
AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 | chr... 57 2e-08
AT5G46010.1 | Symbols: | Homeodomain-like superfamily protein |... 49 4e-06
>AT3G18010.1 | Symbols: WOX1 | WUSCHEL related homeobox 1 |
chr3:6161155-6163183 REVERSE LENGTH=350
Length = 350
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 186/379 (49%), Gaps = 79/379 (20%)
Query: 2 VGYNESGAE-FNMADYPFNGRKLRPLMPRPIHL--------------LASVT---EQNKR 43
+GYNE GA+ FN GRKLRPL+PR +A VT EQNKR
Sbjct: 4 MGYNEGGADSFN------GGRKLRPLIPRLTSCPTAAVNTNSDHRFNMAVVTMTAEQNKR 57
Query: 44 EF-------NTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIE 96
E PPV+VSSRWNPTP+QLR LEELYR+GTRTPSA+ IQQITAQLRR+GKIE
Sbjct: 58 ELMMLNSEPQHPPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIE 117
Query: 97 GKNVFYWFQNHKARERQKRRRQMESEAEGPPRDFES--SHH--DKKDLGASRTVFEVEQT 152
GKNVFYWFQNHKARERQKRRRQME+ E S S+H DKKD ++VEQ
Sbjct: 118 GKNVFYWFQNHKARERQKRRRQMETGHEETVLSTASLVSNHGFDKKDPPG----YKVEQV 173
Query: 153 KNNWPSSTNCTSTLAEESVSIQSXXXXXXXXXECSRTDGWLQFDEGELQQQRRNFMERNA 212
K NW S C + + S +R G +RR+F+ N
Sbjct: 174 K-NWICSVGCDTQPEKPSRDYHLEEPANIRVEHNARCGG----------DERRSFLGINT 222
Query: 213 TWRMMQFPCPPQPPHFINTPPQYXXXXXXXXXXXXRLMDQKLIKTHADLSFFISP---HT 269
TW+MMQ PP + Q + D + +SP T
Sbjct: 223 TWQMMQL--PPSFYSSSHHHHQRNLILNSPTVSSNMSNSNNAVSASKD-TVTVSPVFLRT 279
Query: 270 RE--NNSIIHLSSFTTED------------NVESQTLQLFPLRNGDGSSENSNQHHKETE 315
RE N H + +D + + QTL+LFPLR S+ E +
Sbjct: 280 REATNTETCHRNGDDNKDQEQHEDCSNGELDHQEQTLELFPLRKEGFCSDG------EKD 333
Query: 316 ISVSAMNAPSQFFEFLPLK 334
++S ++ F+EFLPLK
Sbjct: 334 KNISGIHC---FYEFLPLK 349
>AT2G28610.1 | Symbols: PRS, WOX3, PRS1 | Homeodomain-like
superfamily protein | chr2:12262115-12263286 FORWARD
LENGTH=244
Length = 244
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 58/69 (84%)
Query: 51 VVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKAR 110
V S+RW PTPEQL LEE+YR G RTP+A QIQQITA L +G+IEGKNVFYWFQNHKAR
Sbjct: 4 VASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKAR 63
Query: 111 ERQKRRRQM 119
+RQK R+++
Sbjct: 64 DRQKLRKKL 72
>AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 |
chr5:23933408-23934627 REVERSE LENGTH=260
Length = 260
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 57/66 (86%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
SSRWNPT +Q+ LE LY+ G RTPSA+QIQQIT +LR +G IEGKNVFYWFQNHKAR+R
Sbjct: 12 SSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQR 71
Query: 113 QKRRRQ 118
QK++++
Sbjct: 72 QKQKQE 77
>AT2G01500.1 | Symbols: PFS2, WOX6, HOS9 | Homeodomain-like
superfamily protein | chr2:224470-225997 REVERSE
LENGTH=271
Length = 271
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 66/88 (75%)
Query: 46 NTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQ 105
N P + RWNPTPEQ+ LEELYR GTRTP+ EQIQQI ++LR++G+IEGKNVFYWFQ
Sbjct: 52 NNIPAAATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQ 111
Query: 106 NHKARERQKRRRQMESEAEGPPRDFESS 133
NHKARER KRRR+ P +D + S
Sbjct: 112 NHKARERLKRRRREGGAIIKPHKDVKDS 139
>AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 |
chr3:3527606-3528263 FORWARD LENGTH=182
Length = 182
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 66/98 (67%), Gaps = 12/98 (12%)
Query: 54 SRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQ 113
RWNPT EQL+ L +L+R G RTP+ +QIQ+I+ +L +GKIE KNVFYWFQNHKARERQ
Sbjct: 23 GRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIESKNVFYWFQNHKARERQ 82
Query: 114 KRRRQMESEAEGPPRDFESSHHDKKDLGASRTVFEVEQ 151
KRR+ DF+ HH ++R VFE+ +
Sbjct: 83 KRRK--------ISIDFDHHHHQP----STRDVFEISE 108
>AT1G46480.1 | Symbols: WOX4 | WUSCHEL related homeobox 4 |
chr1:17236903-17237953 REVERSE LENGTH=251
Length = 251
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 55/65 (84%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
+RWNPT EQ+ LE LY+ G RTP+A+QI+ IT QL ++GKIEGKNVFYWFQNHKARER
Sbjct: 88 GTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARER 147
Query: 113 QKRRR 117
QK++R
Sbjct: 148 QKQKR 152
>AT2G17950.1 | Symbols: WUS, PGA6, WUS1 | Homeodomain-like
superfamily protein | chr2:7809100-7810671 REVERSE
LENGTH=292
Length = 292
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 57/66 (86%), Gaps = 1/66 (1%)
Query: 52 VSSRWNPTPEQLRALEELY-RRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKAR 110
S+RW PT EQ++ L+ELY R+P+A+QIQ+ITA+LR+FGKIEGKNVFYWFQNHKAR
Sbjct: 35 TSTRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKAR 94
Query: 111 ERQKRR 116
ERQK+R
Sbjct: 95 ERQKKR 100
>AT5G05770.1 | Symbols: WOX7 | WUSCHEL related homeobox 7 |
chr5:1734487-1734855 FORWARD LENGTH=122
Length = 122
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 52/65 (80%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
RWNPT EQ++ L +L++ G RTPS +QIQ+I+ +L +GKIE KNVFYWFQNHKARER
Sbjct: 27 CGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMELSFYGKIESKNVFYWFQNHKARER 86
Query: 113 QKRRR 117
QK R+
Sbjct: 87 QKCRK 91
>AT5G45980.1 | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 |
chr5:18648921-18650698 FORWARD LENGTH=325
Length = 325
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RWNP PEQ+R LE ++ GT P E+IQ+I +L+ +G+I NVFYWFQN K+R + K
Sbjct: 55 RWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 114
Query: 115 RRRQMES 121
R +S
Sbjct: 115 LRVHHKS 121
>AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 |
chr2:14341639-14343597 REVERSE LENGTH=378
Length = 378
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RWNP PEQ+R LE ++ G P E+I++I AQL+ +G++ NVFYWFQN K+R + K
Sbjct: 55 RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114
Query: 115 RR 116
R
Sbjct: 115 LR 116
>AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268
Length = 268
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 45/61 (73%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW PTP QL+ LE ++ +GT TPS ++I+ IT +L + G+I +NV+ WFQN +AR ++K
Sbjct: 99 RWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRK 158
Query: 115 R 115
+
Sbjct: 159 Q 159
>AT1G20700.1 | Symbols: WOX14, ATWOX14 | WUSCHEL related homeobox 14
| chr1:7182558-7183866 FORWARD LENGTH=211
Length = 211
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW PT QL+ LE +Y G+ TP+ +I++I +L G+I NV+ WFQN +A R K
Sbjct: 95 RWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRA--RSK 152
Query: 115 RRRQMESEAEGPPRDFESSHHDKKDLGAS 143
R++ + A G D + +++ G S
Sbjct: 153 RKQPQTTTANGQADDVAVTTEERRSCGDS 181
>AT5G17810.2 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
chr5:5880576-5882602 REVERSE LENGTH=268
Length = 268
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 52 VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQN 106
V +RW+P PEQ+ LE ++ GT P ++ +I L +FG + NVFYWFQN
Sbjct: 18 VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72
>AT5G17810.1 | Symbols: WOX12 | WUSCHEL related homeobox 12 |
chr5:5880576-5882602 REVERSE LENGTH=268
Length = 268
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 52 VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQN 106
V +RW+P PEQ+ LE ++ GT P ++ +I L +FG + NVFYWFQN
Sbjct: 18 VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQN 72
>AT3G03660.1 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
chr3:889515-892162 REVERSE LENGTH=268
Length = 268
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 52 VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQN 106
V SRW+P PEQ+ LE ++ G P E+ +I L +FG + NVFYWFQN
Sbjct: 30 VRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84
>AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
chr3:889515-892162 REVERSE LENGTH=297
Length = 297
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 52 VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQN 106
V SRW+P PEQ+ LE ++ G P E+ +I L +FG + NVFYWFQN
Sbjct: 30 VRSRWSPKPEQILILESIFHSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQN 84
>AT1G20710.1 | Symbols: WOX10 | WUSCHEL related homeobox 10 |
chr1:7184485-7185267 FORWARD LENGTH=197
Length = 197
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 40/54 (74%)
Query: 62 QLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 115
QL+ LE +Y+ G+ TP+ +I++IT +L G+I KNV++WFQN +AR ++K+
Sbjct: 86 QLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQ 139
>AT5G46010.1 | Symbols: | Homeodomain-like superfamily protein |
chr5:18660584-18661183 FORWARD LENGTH=122
Length = 122
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 56 WNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFG-KIEGKNVFYWFQNHKARERQK 114
W P Q + LEEL+ GT PS I+QIT +L+ +G +++ +V+ WF N K + K
Sbjct: 55 WKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEEVDDADVYKWFHNRKYSRKPK 114