Miyakogusa Predicted Gene
- Lj4g3v3114670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3114670.1 Non Chatacterized Hit- tr|H0UVL9|H0UVL9_CAVPO
Uncharacterized protein OS=Cavia porcellus GN=GOLGA5
P,30.37,0.00000000000002,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL;
GOLGIN-84,NULL; seg,NULL; Golgin_A5,Golgin subfamily A m,CUFF.52412.1
(646 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18190.1 | Symbols: GC2 | golgin candidate 2 | chr1:6257963-6... 407 e-114
AT2G19950.2 | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8... 76 6e-14
AT2G19950.1 | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8... 76 6e-14
>AT1G18190.1 | Symbols: GC2 | golgin candidate 2 |
chr1:6257963-6261325 REVERSE LENGTH=668
Length = 668
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/332 (62%), Positives = 263/332 (79%), Gaps = 8/332 (2%)
Query: 315 MVAKLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLA 374
MVA+LEGEK SLEKI+EERA QQAQEA++LQ MET+EA +LEKQKHNNTRMEVL RLA
Sbjct: 339 MVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTRLA 398
Query: 375 KLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEFVHEELRRSMRNPRQTGAS-RN 433
LE NA+L RSLAA Q LE ++ QVA L+Q++ KE EEL+R+ N G + +
Sbjct: 399 GLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTLKQ 458
Query: 434 LLASKGVEFEREILEAELSLINDKVSQLQEKARKLEADIEMTRKEIEQPTEVEVELKRRL 493
L S+G +FE ++LEAE+SL+ DK+ +LQ+KA KLEADIEM RKE+E+PTEVE+ELKRRL
Sbjct: 459 LDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKRRL 518
Query: 494 HQMTDHLIQKQAKVESLSSEKASLQFRIEAVSRLLDENMSASGSTAMNPASSSSDVESGI 553
+Q+TDHLIQKQ++VE+LSSEKA++ FRIEAVSRL++EN S + A SS D+E+G
Sbjct: 519 NQLTDHLIQKQSQVEALSSEKATILFRIEAVSRLIEENKGMSATEA-----SSQDLEAGD 573
Query: 554 WELSNSKLKPMLKARIHSGKRQLGYLLQQLDYIFVAGAVFLKRNPTAKLWAMIYLVCLHL 613
WELS SK KP + +I SGK+ LG+L+ QL+ IF++G VFL+RNPTAK+WA++YLVCLHL
Sbjct: 574 WELSGSKFKPAFQDKIRSGKKHLGWLVMQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHL 633
Query: 614 WVIYILTSHSGPSNEG--RSGAVISLENINNT 643
WV+YIL SHS S+ G RSGAVISLEN +N+
Sbjct: 634 WVLYILLSHSDASSSGELRSGAVISLENFSNS 665
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 33/166 (19%)
Query: 1 MANWISSKLKAAENILHQIDQQAAESLRKNEKLRSDELGIHDAPAAKSGSV-VSLKNQLK 59
MANWISSKLKAAE IL Q+DQQAA+SLRK+EK + + +P KSGS VSLK+QL+
Sbjct: 1 MANWISSKLKAAETILQQLDQQAADSLRKDEKSETHDEVFETSP--KSGSSPVSLKDQLR 58
Query: 60 KKPSENND-----YHGKLHSDPNF----------------TTAPKSSPT---PTLADADW 95
KK E +D P++ T+AP S T L D DW
Sbjct: 59 KKTYEGSDSGSGSQRNSTEQKPSYLSSSKKVRKPDQSHERTSAPSQSLTQDNTKLTDNDW 118
Query: 96 TQLLSSPTHSIASASGGDHG--NGARGFNKNGRKHKDL----LLSD 135
T+LLS+P ++++ G + RG K+G++H +L L+SD
Sbjct: 119 TELLSTPNQRTSTSTSRSPGGTSAIRGLKKDGKRHGNLGKNPLVSD 164
>AT2G19950.2 | Symbols: GC1 | golgin candidate 1 |
chr2:8616341-8621219 REVERSE LENGTH=710
Length = 710
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 24/318 (7%)
Query: 318 KLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLAKLE 377
KL + +E I+ R + + L+ T E E+ HN T+M + R +LE
Sbjct: 379 KLSSLQGDMESIMRNRELAETRMMQALREELATTERRAEEERSAHNATKMAAMERERELE 438
Query: 378 TVNADLARSLAAVQCNLEVEVKQVAELRQKI---------VSKEFVHEELRRSMRNPRQT 428
D + +L +Q + +VA+ QK+ +++E E+R +
Sbjct: 439 HRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQKKAP 498
Query: 429 GASRNLLASKGVEFEREILEAELSLINDKVSQLQEKARKLEADIEMTRKEIEQPTEVE-V 487
+ ++ + + E + +K+S ++ + +KL ++ +++ E + E
Sbjct: 499 DEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHT 558
Query: 488 ELKRRLHQMTDHLIQKQAKVESLSSEKASLQFRIEA-VSRLLDENMSASGSTAMNPASSS 546
EL++R ++TD L KQ ++E+++SEKA+ +F++E V RL + + S AS++
Sbjct: 559 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRVSRRASAT 618
Query: 547 SDVESGIWELSNSKLK-----PMLKARIHSGKRQLGYLLQQLDYIFVAGAVFLKRNPTAK 601
WE +S++K P+ + + QL ++ LD V FL R P A+
Sbjct: 619 -------WE-EDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIAR 670
Query: 602 LWAMIYLVCLHLWVIYIL 619
++ + YLV +HL+++Y++
Sbjct: 671 MFLLFYLVFVHLFLMYLI 688
>AT2G19950.1 | Symbols: GC1 | golgin candidate 1 |
chr2:8616341-8621219 REVERSE LENGTH=707
Length = 707
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 24/318 (7%)
Query: 318 KLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLAKLE 377
KL + +E I+ R + + L+ T E E+ HN T+M + R +LE
Sbjct: 376 KLSSLQGDMESIMRNRELAETRMMQALREELATTERRAEEERSAHNATKMAAMERERELE 435
Query: 378 TVNADLARSLAAVQCNLEVEVKQVAELRQKI---------VSKEFVHEELRRSMRNPRQT 428
D + +L +Q + +VA+ QK+ +++E E+R +
Sbjct: 436 HRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQKKAP 495
Query: 429 GASRNLLASKGVEFEREILEAELSLINDKVSQLQEKARKLEADIEMTRKEIEQPTEVE-V 487
+ ++ + + E + +K+S ++ + +KL ++ +++ E + E
Sbjct: 496 DEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHT 555
Query: 488 ELKRRLHQMTDHLIQKQAKVESLSSEKASLQFRIEA-VSRLLDENMSASGSTAMNPASSS 546
EL++R ++TD L KQ ++E+++SEKA+ +F++E V RL + + S AS++
Sbjct: 556 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRVSRRASAT 615
Query: 547 SDVESGIWELSNSKLK-----PMLKARIHSGKRQLGYLLQQLDYIFVAGAVFLKRNPTAK 601
WE +S++K P+ + + QL ++ LD V FL R P A+
Sbjct: 616 -------WE-EDSEIKTLEPLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIAR 667
Query: 602 LWAMIYLVCLHLWVIYIL 619
++ + YLV +HL+++Y++
Sbjct: 668 MFLLFYLVFVHLFLMYLI 685