Miyakogusa Predicted Gene

Lj4g3v3114570.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3114570.1 Non Chatacterized Hit- tr|C5Y080|C5Y080_SORBI
Putative uncharacterized protein Sb04g030180
OS=Sorghu,32.71,4e-18,seg,NULL,
NODE_67477_length_1267_cov_62.516178.path2.1
         (335 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18050.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   286   1e-77
AT4G28100.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   178   5e-45

>AT3G18050.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:6180931-6182593 FORWARD
           LENGTH=335
          Length = 335

 Score =  286 bits (733), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 166/318 (52%), Positives = 190/318 (59%), Gaps = 33/318 (10%)

Query: 15  ILLLSTLLSCYVVALPDASASSAARPISTNPTSQGTIPAFPEQADSAGCPLSLSEDHYEG 74
           I+ L T+LS      P +      +P     +   TIPAFPEQ+D +GCPL L ED + G
Sbjct: 13  IIFLFTILS------PVSPEPVTVQPFRVKSSPPATIPAFPEQSDFSGCPLDLPEDLFHG 66

Query: 75  IKSACGNNKHGGGDEKLHHSRCCPVLAAWLYSAYSATALGGLVHG-------------SP 121
           IKSAC         +KLH  +CCPVL AWLYSAYS TAL   +               +P
Sbjct: 67  IKSACSG-------KKLHKGKCCPVLGAWLYSAYSTTALSRSISAAARNSSSSSAAVTTP 119

Query: 122 SYDMPLLPDDSETCESDLGKALKVRGIELVQPNETCDVVYCYCGIRLHPLSCPESFSVTP 181
             DMPLLPDDSETC   LGK+L+ RGIEL +PNETCDVVYCYCGIRLHPLSC E+F V  
Sbjct: 120 EEDMPLLPDDSETCVDGLGKSLRQRGIELTRPNETCDVVYCYCGIRLHPLSCSEAFRVND 179

Query: 182 SGNLVGDENVKRLERNCLSSSSNVND----LPGLGGCXXXXXXXXXXXXXXXXXXXXXE- 236
            G LVGDE V RLE +CLS S N  D    L G   C                     + 
Sbjct: 180 EGRLVGDERVDRLETDCLSGSHNNADGFSPLLGCNKCLNSLYKLNPKKTSGTRNPSKEDR 239

Query: 237 DRTTKIHNKDCELMGLTWLLNKNRTAYMHTVTVVLRALMLSTDGSDPQSCTLNSDGMPLA 296
           +RT K+HNKDC LMGLTWLL KNRTAY  TVT VLRA+ML+ DG  P+SC L SDGMPLA
Sbjct: 240 NRTAKMHNKDCVLMGLTWLLAKNRTAYFPTVTSVLRAVMLNHDGV-PRSCALGSDGMPLA 298

Query: 297 VDSSEMYDQSSSAKLQGP 314
           VDSSE +   S   LQ P
Sbjct: 299 VDSSE-FSNGSPTSLQYP 315


>AT4G28100.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: anchored to
           plasma membrane, anchored to membrane; EXPRESSED IN: 23
           plant structures; EXPRESSED DURING: 14 growth stages;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G18050.1); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:13965300-13966697 REVERSE LENGTH=304
          Length = 304

 Score =  178 bits (451), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/267 (40%), Positives = 144/267 (53%), Gaps = 27/267 (10%)

Query: 45  PTSQGTIPAFPEQADSAGCPLSLSEDHYEGIKSACGNNKHGGGDEKLHHSRCCPVLAAWL 104
           P    T+PAFP +  +  C L LS + + G+  ACG N        L  SRCCPVLAAWL
Sbjct: 28  PVQPNTVPAFPVETQAQSCRLDLSNELFGGVNEACGRN--------LDRSRCCPVLAAWL 79

Query: 105 YSAYSATALG----GLVHGSPSYDMPLLPDDSETCESDLGKALKVRGIELVQPNETCDVV 160
           ++A++ +AL          S   D P+ PDDS+ C + L  AL  + I++ QPN +CD +
Sbjct: 80  FAAHARSALQLPAPAPTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAI 139

Query: 161 YCYCGIRLHP---LSCPESFSVTPSG--NLVGDENVKRLERNCLSSSSNVNDLPGLGGCX 215
            C+CGIRLH    LSCP +F+V+ SG  N      VK LE+ C +SS          GC 
Sbjct: 140 LCFCGIRLHQISSLSCPAAFNVS-SGFKNATPTAAVKNLEKECRNSS--------YSGCT 190

Query: 216 XXXXXXXXXXXXXXXXXXXXEDRTTKIHNKDCELMGLTWLLNKNRTAYMHTVTVVLRALM 275
                               E R TK+ +KDC+LMGLTWLL +N+TAY+ TV+ VLRA+M
Sbjct: 191 RCLGALQKLKVRGGNKKTTTE-RGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIM 249

Query: 276 LSTDGSDPQSCTLNSDGMPLAVDSSEM 302
            S        C+ + + MPLAVDS + 
Sbjct: 250 YSPHPPHLNKCSPDQENMPLAVDSLQF 276