Miyakogusa Predicted Gene
- Lj4g3v3113850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3113850.1 tr|A9STS4|A9STS4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166516,26.97,9e-19,coiled-coil,NULL; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.52357.1
(347 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12330.1 | Symbols: | unknown protein; INVOLVED IN: biologic... 417 e-117
AT5G12900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 234 7e-62
AT3G60680.1 | Symbols: | Plant protein of unknown function (DUF... 60 2e-09
AT2G45260.1 | Symbols: | Plant protein of unknown function (DUF... 57 3e-08
AT5G58960.1 | Symbols: GIL1 | Plant protein of unknown function ... 55 6e-08
AT5G58960.3 | Symbols: GIL1 | Plant protein of unknown function ... 55 7e-08
AT5G58960.2 | Symbols: GIL1 | Plant protein of unknown function ... 55 7e-08
AT1G53380.3 | Symbols: | Plant protein of unknown function (DUF... 54 2e-07
AT1G53380.2 | Symbols: | Plant protein of unknown function (DUF... 54 2e-07
AT1G53380.1 | Symbols: | Plant protein of unknown function (DUF... 54 2e-07
AT3G14870.1 | Symbols: | Plant protein of unknown function (DUF... 51 1e-06
AT3G14870.2 | Symbols: | Plant protein of unknown function (DUF... 51 1e-06
AT3G14870.3 | Symbols: | Plant protein of unknown function (DUF... 51 1e-06
>AT1G12330.1 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast
hits to 249 proteins in 27 species: Archae - 0; Bacteria
- 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0;
Other Eukaryotes - 11 (source: NCBI BLink). |
chr1:4194673-4196627 FORWARD LENGTH=505
Length = 505
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/313 (63%), Positives = 250/313 (79%), Gaps = 10/313 (3%)
Query: 22 REEQWKIAVAELSHKLVQATRKRDEALLEASRLMHSMTXXXXXXXXXXXYCHTLKSGLEE 81
REEQW++AVAELSHKL+QAT+K+++A++EASRL SM YCH LKSGL+E
Sbjct: 170 REEQWRLAVAELSHKLIQATKKKEDAVIEASRLKSSMAELEKKLNKLEIYCHNLKSGLDE 229
Query: 82 CSNNSNN---KVQSFHQDSVIQHFLVSVSEARSCVRLLSRSLTMQLRHMGGTKVYEKVSI 138
CSN + + F+ D +IQ FLVSVSE+RS +R LSRSL QLR +GG KVYE++S+
Sbjct: 230 CSNKKQSVPIRKDGFN-DRIIQQFLVSVSESRSSIRALSRSLASQLRTVGG-KVYERLSL 287
Query: 139 LLQPYEIRI-SFSKNPRSLLFYLEALLNRAFFEDFESVGFQKNGCNQTLNPMDRCEASFT 197
LLQP++++I SF+KNP+SL+FYLEA+L+RAFFEDFE+ GFQKNG + LNP+DRCE+++
Sbjct: 288 LLQPFDVKINSFAKNPKSLIFYLEAILSRAFFEDFEAPGFQKNGSTRILNPIDRCESNYA 347
Query: 198 AFNTLHGLTWEEVLSKGTRHFSEEFSRFCDRKMSEIVAMLGWNRAWPEPLLQAFFGASKS 257
+FN L LTW+EVLS+GT+HFSEEFSRFCDRKMS++V+ML WNRAWPEPLLQAFFGASKS
Sbjct: 348 SFNVLMELTWDEVLSRGTKHFSEEFSRFCDRKMSDVVSMLSWNRAWPEPLLQAFFGASKS 407
Query: 258 VWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRASKLVPNMVRIMVAPGFYVYGS 317
VW+VHLLANSV+P L IFRV+K FD +YME+ GG+R L VR MV PGFYVYGS
Sbjct: 408 VWLVHLLANSVNPGLQIFRVEKDDRFDPIYMEETGGERFKSL----VRAMVQPGFYVYGS 463
Query: 318 AVKCKVLCRYLSS 330
VKCKV+C+ S
Sbjct: 464 VVKCKVVCKQCGS 476
>AT5G12900.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:4072151-4074445 REVERSE LENGTH=562
Length = 562
Score = 234 bits (597), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 195/336 (58%), Gaps = 23/336 (6%)
Query: 15 APSLSRSREEQWKI------AVAELSHKLVQATRKRDEALLEASRLMHSMTXXXXXXXXX 68
+PS++ EE ++ V +L +L++A R RD AL + S + S+
Sbjct: 227 SPSITEKSEEVSEVLKDSGSGVEKLKRELMEANRSRDAALTQVSEMKSSLGELSEKLQYL 286
Query: 69 XXYCHTLKSGLEEC------------SNNSNNKVQSFHQDSVIQHFLVSVSEARSCVRLL 116
YC LK L E S+ N ++ +++ FL VSEAR ++
Sbjct: 287 ESYCDNLKKALREATEVVSQENSGGRSSGKKNSEMPVSEEVMVEGFLQIVSEARLSIKQF 346
Query: 117 SRSLTMQLRHMGGTKVYEKVSILLQPYEIRISFSKNPRSLLFYLEALLNRAFFEDFESVG 176
++L ++ T + ++ LLQP+ + + SK + + ++LEA+++++ ++DFE+
Sbjct: 347 LKTLVSEIDEEDSTLI-GNINTLLQPHNLSFT-SKYSKIIQYHLEAIISQSVYQDFENCV 404
Query: 177 FQKNGCNQTLNPMDRCEASFTAFNTLHGLTWEEVLSKGTRHFSEEFSRFCDRKMSEIVAM 236
FQKNG + L+P +A+F++F +L L+W EVL KGT+++S+EFSRFCD KMS I+
Sbjct: 405 FQKNGKPKLLDPEQDRQANFSSFASLRNLSWNEVLKKGTKYYSDEFSRFCDEKMSLIITT 464
Query: 237 LGWNRAWPEPLLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRA 296
L W R W E +LQAFF A+K VW++HLLA S +P+L I RV++ F+S +MEDMG DR
Sbjct: 465 LNWTRPWSEQMLQAFFVAAKCVWLLHLLAFSFNPALGILRVEENREFESSFMEDMGADRQ 524
Query: 297 SKLV---PNMVRIMVAPGFYVYGSAVKCKVLCRYLS 329
+ P V++MV PGFYV ++CKVLCRY S
Sbjct: 525 RSALSRGPARVKVMVMPGFYVLDRVLRCKVLCRYKS 560
>AT3G60680.1 | Symbols: | Plant protein of unknown function
(DUF641) | chr3:22430246-22431745 FORWARD LENGTH=499
Length = 499
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 20/122 (16%)
Query: 222 FSRFCDRKMSEIV---------AMLGWNRA----WPE--PLLQAFFGASKSVWMVHLLAN 266
FSRFCD+K E++ + + N A W ++F + S+W +H LA
Sbjct: 370 FSRFCDKKYHELIHPNMASSIFSNMDENEAVLSSWRSLSTFYESFVTMASSIWTLHKLAL 429
Query: 267 SVHPSLPIFRVDKGVSFDSVYMEDM---GGDRASKLVPNMVRI--MVAPGFYVYGSAVKC 321
S P++ IF+V+ GV F V+ME++ D+ + P ++ V PGF + + ++C
Sbjct: 430 SFDPAVEIFQVESGVEFSIVFMENVLKRKQDKKFSMSPTRAKVGFTVVPGFKIGCTVIQC 489
Query: 322 KV 323
+V
Sbjct: 490 QV 491
>AT2G45260.1 | Symbols: | Plant protein of unknown function
(DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425
Length = 425
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 249 QAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRA--SKLVPNMVRI 306
QAF +KS+W++H LA S P+ IF+V KG F YME + + K V +
Sbjct: 340 QAFLKLAKSIWILHRLAYSFDPAAKIFQVKKGSEFSDSYMESVVKNIVVDEKEENPRVGL 399
Query: 307 MVAPGFYVYGSAVKCKV 323
MV PGF++ GS ++ +V
Sbjct: 400 MVMPGFWIGGSVIQSRV 416
>AT5G58960.1 | Symbols: GIL1 | Plant protein of unknown function
(DUF641) | chr5:23805799-23808360 FORWARD LENGTH=559
Length = 559
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 158 FYLEALLNRAFFEDFESVGFQKNGCNQTL-NPMDRCEASFTAFNTLHGLTWEEVLSK-GT 215
F LE+ + R F+ F+ F +G +L NP F F + + E+L T
Sbjct: 370 FALESYICRKIFQGFDHETFYMDGSLSSLINPDQYRRDCFAQFKDMKAMDPMELLGILPT 429
Query: 216 RHFSEEFSRFCDRKMSEIV------AMLGWNR------AWPEPLLQ---AFFGASKSVWM 260
HF +FC +K I+ ++ G + A P Q F G +K+VW+
Sbjct: 430 CHFG----KFCSKKYLSIIHQKMEESLFGDSEQRELVVAGNHPRSQFYGEFLGLAKAVWL 485
Query: 261 VHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRASKL-VPNMVRIMVAPGFYV----Y 315
+HLLA S+ PS F ++G F S YME + ++ +V V PGF +
Sbjct: 486 LHLLAFSLDPSPSHFEANRGAEFHSQYMESVVRFSDGRVPAGQVVGFPVCPGFKLSHQGK 545
Query: 316 GSAVKCKV 323
GS +K +V
Sbjct: 546 GSIIKSRV 553
>AT5G58960.3 | Symbols: GIL1 | Plant protein of unknown function
(DUF641) | chr5:23806906-23808360 FORWARD LENGTH=484
Length = 484
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 158 FYLEALLNRAFFEDFESVGFQKNGCNQTL-NPMDRCEASFTAFNTLHGLTWEEVLSK-GT 215
F LE+ + R F+ F+ F +G +L NP F F + + E+L T
Sbjct: 295 FALESYICRKIFQGFDHETFYMDGSLSSLINPDQYRRDCFAQFKDMKAMDPMELLGILPT 354
Query: 216 RHFSEEFSRFCDRKMSEIV------AMLGWNR------AWPEPLLQ---AFFGASKSVWM 260
HF +FC +K I+ ++ G + A P Q F G +K+VW+
Sbjct: 355 CHFG----KFCSKKYLSIIHQKMEESLFGDSEQRELVVAGNHPRSQFYGEFLGLAKAVWL 410
Query: 261 VHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRASKL-VPNMVRIMVAPGFYV----Y 315
+HLLA S+ PS F ++G F S YME + ++ +V V PGF +
Sbjct: 411 LHLLAFSLDPSPSHFEANRGAEFHSQYMESVVRFSDGRVPAGQVVGFPVCPGFKLSHQGK 470
Query: 316 GSAVKCKV 323
GS +K +V
Sbjct: 471 GSIIKSRV 478
>AT5G58960.2 | Symbols: GIL1 | Plant protein of unknown function
(DUF641) | chr5:23806906-23808360 FORWARD LENGTH=484
Length = 484
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 158 FYLEALLNRAFFEDFESVGFQKNGCNQTL-NPMDRCEASFTAFNTLHGLTWEEVLSK-GT 215
F LE+ + R F+ F+ F +G +L NP F F + + E+L T
Sbjct: 295 FALESYICRKIFQGFDHETFYMDGSLSSLINPDQYRRDCFAQFKDMKAMDPMELLGILPT 354
Query: 216 RHFSEEFSRFCDRKMSEIV------AMLGWNR------AWPEPLLQ---AFFGASKSVWM 260
HF +FC +K I+ ++ G + A P Q F G +K+VW+
Sbjct: 355 CHFG----KFCSKKYLSIIHQKMEESLFGDSEQRELVVAGNHPRSQFYGEFLGLAKAVWL 410
Query: 261 VHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDRASKL-VPNMVRIMVAPGFYV----Y 315
+HLLA S+ PS F ++G F S YME + ++ +V V PGF +
Sbjct: 411 LHLLAFSLDPSPSHFEANRGAEFHSQYMESVVRFSDGRVPAGQVVGFPVCPGFKLSHQGK 470
Query: 316 GSAVKCKV 323
GS +K +V
Sbjct: 471 GSIIKSRV 478
>AT1G53380.3 | Symbols: | Plant protein of unknown function
(DUF641) | chr1:19913341-19914702 REVERSE LENGTH=453
Length = 453
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 158 FYLEALLNRAFFEDFESVGFQKNGCNQTLNPMDRCEAS----FTAFNTLHGLTWEEVLSK 213
F E ++ FE F F + +++ + A F F L + ++ L+
Sbjct: 261 FTFEHFVSNVMFEAFHLPYFSTSSESRSYKKKKQSNADREMFFERFKELRSMKAKDYLTA 320
Query: 214 GTRHFSEEFSRFCDRKMSEIV------AMLGW----NRA----WPEP-LLQAFFGASKSV 258
+ F+RFC K +++ A G N+ +PE L F +K +
Sbjct: 321 RPK---SRFARFCRAKYLQLIHPKMEQAFFGHLHLRNQVSAGEFPETSLFSGFLEMAKRI 377
Query: 259 WMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDR---ASKLVPN---MVRIMVAPGF 312
W++H LA S IFRV KG F VYM+ + + A++ P V V PGF
Sbjct: 378 WLLHCLALSFEREAEIFRVPKGCRFSEVYMKSVAEEAFFPAAESSPESEPRVAFTVVPGF 437
Query: 313 YVYGSAVKCKVLCRYLSSS 331
+ ++++C+V YLS S
Sbjct: 438 RIGKTSIQCEV---YLSLS 453
>AT1G53380.2 | Symbols: | Plant protein of unknown function
(DUF641) | chr1:19913341-19914702 REVERSE LENGTH=453
Length = 453
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 158 FYLEALLNRAFFEDFESVGFQKNGCNQTLNPMDRCEAS----FTAFNTLHGLTWEEVLSK 213
F E ++ FE F F + +++ + A F F L + ++ L+
Sbjct: 261 FTFEHFVSNVMFEAFHLPYFSTSSESRSYKKKKQSNADREMFFERFKELRSMKAKDYLTA 320
Query: 214 GTRHFSEEFSRFCDRKMSEIV------AMLGW----NRA----WPEP-LLQAFFGASKSV 258
+ F+RFC K +++ A G N+ +PE L F +K +
Sbjct: 321 RPK---SRFARFCRAKYLQLIHPKMEQAFFGHLHLRNQVSAGEFPETSLFSGFLEMAKRI 377
Query: 259 WMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDR---ASKLVPN---MVRIMVAPGF 312
W++H LA S IFRV KG F VYM+ + + A++ P V V PGF
Sbjct: 378 WLLHCLALSFEREAEIFRVPKGCRFSEVYMKSVAEEAFFPAAESSPESEPRVAFTVVPGF 437
Query: 313 YVYGSAVKCKVLCRYLSSS 331
+ ++++C+V YLS S
Sbjct: 438 RIGKTSIQCEV---YLSLS 453
>AT1G53380.1 | Symbols: | Plant protein of unknown function
(DUF641) | chr1:19913341-19914702 REVERSE LENGTH=453
Length = 453
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 158 FYLEALLNRAFFEDFESVGFQKNGCNQTLNPMDRCEAS----FTAFNTLHGLTWEEVLSK 213
F E ++ FE F F + +++ + A F F L + ++ L+
Sbjct: 261 FTFEHFVSNVMFEAFHLPYFSTSSESRSYKKKKQSNADREMFFERFKELRSMKAKDYLTA 320
Query: 214 GTRHFSEEFSRFCDRKMSEIV------AMLGW----NRA----WPEP-LLQAFFGASKSV 258
+ F+RFC K +++ A G N+ +PE L F +K +
Sbjct: 321 RPK---SRFARFCRAKYLQLIHPKMEQAFFGHLHLRNQVSAGEFPETSLFSGFLEMAKRI 377
Query: 259 WMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGDR---ASKLVPN---MVRIMVAPGF 312
W++H LA S IFRV KG F VYM+ + + A++ P V V PGF
Sbjct: 378 WLLHCLALSFEREAEIFRVPKGCRFSEVYMKSVAEEAFFPAAESSPESEPRVAFTVVPGF 437
Query: 313 YVYGSAVKCKVLCRYLSSS 331
+ ++++C+V YLS S
Sbjct: 438 RIGKTSIQCEV---YLSLS 453
>AT3G14870.1 | Symbols: | Plant protein of unknown function
(DUF641) | chr3:5004159-5005586 FORWARD LENGTH=475
Length = 475
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 243 WPEP-LLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGD------- 294
+PE L AF +K VW++H LA S P IF+V +G F VYM+ + +
Sbjct: 374 FPETSLCTAFLEMAKRVWLLHCLAFSFDPEASIFQVSRGCRFSEVYMKSVSEEAFFSPEQ 433
Query: 295 -RASKLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLSSS 331
+S V V PGF + + ++C+V YLS S
Sbjct: 434 EESSSETEPGVAFTVVPGFRIGKTTIQCEV---YLSRS 468
>AT3G14870.2 | Symbols: | Plant protein of unknown function
(DUF641) | chr3:5004171-5005586 FORWARD LENGTH=471
Length = 471
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 243 WPEP-LLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGD------- 294
+PE L AF +K VW++H LA S P IF+V +G F VYM+ + +
Sbjct: 370 FPETSLCTAFLEMAKRVWLLHCLAFSFDPEASIFQVSRGCRFSEVYMKSVSEEAFFSPEQ 429
Query: 295 -RASKLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLSSS 331
+S V V PGF + + ++C+V YLS S
Sbjct: 430 EESSSETEPGVAFTVVPGFRIGKTTIQCEV---YLSRS 464
>AT3G14870.3 | Symbols: | Plant protein of unknown function
(DUF641) | chr3:5004040-5005586 FORWARD LENGTH=472
Length = 472
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 243 WPEP-LLQAFFGASKSVWMVHLLANSVHPSLPIFRVDKGVSFDSVYMEDMGGD------- 294
+PE L AF +K VW++H LA S P IF+V +G F VYM+ + +
Sbjct: 371 FPETSLCTAFLEMAKRVWLLHCLAFSFDPEASIFQVSRGCRFSEVYMKSVSEEAFFSPEQ 430
Query: 295 -RASKLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLSSS 331
+S V V PGF + + ++C+V YLS S
Sbjct: 431 EESSSETEPGVAFTVVPGFRIGKTTIQCEV---YLSRS 465