Miyakogusa Predicted Gene

Lj4g3v3113320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113320.1 tr|B9GYI8|B9GYI8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555245 PE=4 SV=1,26.8,9e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
seg,NULL,CUFF.52339.1
         (393 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07610.1 | Symbols:  | F-box family protein | chr5:2406068-24...    55   9e-08

>AT5G07610.1 | Symbols:  | F-box family protein |
           chr5:2406068-2407330 FORWARD LENGTH=420
          Length = 420

 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 87/377 (23%)

Query: 34  RSKCVSRQWLTLISDQQFRES---------------HRDKHQRYNTSLIFNPKASGRIEI 78
           R K VS++WL+LI++  F                  H  +  +Y+   + +   + RI  
Sbjct: 52  RFKRVSKRWLSLITNPVFSNRVIKSNHPLPISGFFLHSPREIKYSFVSLDDDATNQRISS 111

Query: 79  PHILCFTAXXXXXXXXXXRFNLNFLHQYELNVVRSCNGIILCH----GLDPFN--YFICN 132
              L FT                  HQ ++ +++S NG++LC       + FN  Y++ N
Sbjct: 112 SLPLWFTD-----------------HQTDMIIMQSTNGLLLCKCSCASSNHFNTNYYVYN 154

Query: 133 PITREFTSLSLPSWFKSKPPRNRTLFLAFNP-----FQII--------SVAAVNASKLDW 179
           P T+++T L        +   +  L LAF+P     +++         S ++ + S+L +
Sbjct: 155 PTTKQYTLLH-------QIAGHIALSLAFDPSRSPHYKVFCLRGRSNNSFSSASDSEL-Y 206

Query: 180 VFNVYSFKSRSWIHSQSEILRSTSSELDDVGHGVYCNRAIHWCNRGYFF-----IYFHLD 234
              VYS     W   +   + ++ S   +  + V+ N A++W    Y F     + F ++
Sbjct: 207 HIEVYSSNEGLW--RRVVPVPTSPSTFIEFSYSVFWNGAVNW----YGFSSRDCLSFDIN 260

Query: 235 TKCLQNLPIPPAYSEFYD----RCLHYFGESGGRLHMMLSPRLGFNFNYDIYELKEDYSE 290
           T+ ++ LP+P    E       R L +  ES G L+ +       + N  +YE++ + S 
Sbjct: 261 TQEIKILPLPDHEHEDEPLPDPRILMFLDESQGNLYYIEVNNQSSS-NLRVYEMESNSSS 319

Query: 291 WTWRHHLDLNSL--------HSEIVVDIIWFRYQLPLGLYIVRT-AKNHLLVLIAGKYGA 341
           W+ ++++DL  L         +E   D   + + + +G     T A +++L+ I  +  A
Sbjct: 320 WSVKYNVDLEPLAAAFPEMIRTEYYTDRRIYAFSV-IGFVKEETDAASYILLHIPNQ--A 376

Query: 342 MVYDPVDGTSRKLCDFR 358
           + Y+ +D T +KLCDF+
Sbjct: 377 VKYNFIDKTFKKLCDFK 393