Miyakogusa Predicted Gene

Lj4g3v3113050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113050.1 Non Chatacterized Hit- tr|I3JYH2|I3JYH2_ORENI
Uncharacterized protein OS=Oreochromis niloticus
GN=SE,25.4,3e-18,Rubis-subs-bind,Rubisco LS methyltransferase,
substrate-binding domain; SET,SET domain; SET domain,N,CUFF.52319.1
         (472 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24610.1 | Symbols:  | Rubisco methyltransferase family prote...   593   e-169
AT1G14030.1 | Symbols:  | Rubisco methyltransferase family prote...    69   9e-12
AT3G07670.1 | Symbols:  | Rubisco methyltransferase family prote...    51   2e-06
AT3G55080.2 | Symbols:  | SET domain-containing protein | chr3:2...    49   7e-06

>AT1G24610.1 | Symbols:  | Rubisco methyltransferase family protein
           | chr1:8720906-8722711 REVERSE LENGTH=476
          Length = 476

 Score =  593 bits (1528), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/475 (62%), Positives = 360/475 (75%), Gaps = 5/475 (1%)

Query: 1   MATSKMVMSSLT-HLRPLTCAASA--SRIVSHPPDLINWVTREGGFVHRAVKIAQLGSNG 57
           MA SKM ++SL   +RP TC A++  SR+  HPPDLI W+ REGGFVH AVK++Q    G
Sbjct: 1   MANSKMAIASLAAQIRPFTCLAASLPSRLAPHPPDLIRWIKREGGFVHHAVKLSQETQFG 60

Query: 58  LGLVAKQEIPMGSELIVLPHHIPLQFPSLDVNPHDSALLQ-LVHHVPEEXXXXXXXXXXX 116
           +GL++ ++I  G++LI LP H+PL+F S D +   S+LL  L   VPEE           
Sbjct: 61  IGLISTEQISPGTDLISLPPHVPLRFESDDSSSSSSSLLSALARRVPEELWAMKLGLRLL 120

Query: 117 QERAKVGSYWWPYISNLPITYSVPIFFPGEDIKNLQYGPLLHQVNKRCRFLLEFEQEVKR 176
           QERA   S+WWPYISNLP TY+VPIFFPGEDIKNLQY PLLHQVNKRCRFLLEFEQE++R
Sbjct: 121 QERANADSFWWPYISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRCRFLLEFEQEIRR 180

Query: 177 ALASLTPDKHPFGGLEVDAPSLGWAMSAVSSRAFRLHGNKD-PNGTHVDIPMMLPLIDMC 235
            L  +    HPF G +V+A +LGW MSAVS+RAFRLHGNK    G+  D+PMMLPLIDMC
Sbjct: 181 TLEDVKASDHPFSGQDVNASALGWTMSAVSTRAFRLHGNKKLQGGSSDDVPMMLPLIDMC 240

Query: 236 NHSFNPNAKIIQEQDSSSTKMQVKVVAKTTIKEDDPLLLCYGNLSNDLFLLDYGFVMHSN 295
           NHSF PNA+IIQEQ+ + +   VKVVA+T +KE+DPLLL YG LSND FLLDYGFV+ SN
Sbjct: 241 NHSFKPNARIIQEQNGADSNTLVKVVAETEVKENDPLLLNYGCLSNDFFLLDYGFVIESN 300

Query: 296 PYDYIELKYDGAFLDAASTAAGVSSPNFSTPAPWQEHILSQLNLAGEAPDLKVSLGGQEI 355
           PYD IELKYD   +DAAS AAGVSSP FS+PAPWQ  +LSQLNLAGE P+LKV++GG E 
Sbjct: 301 PYDTIELKYDEQLMDAASMAAGVSSPKFSSPAPWQHQLLSQLNLAGEMPNLKVTIGGPEP 360

Query: 356 IEGXXXXXXXXXXXSDAETVQKHDLNTLKSLHAEAPLGVANDIAVFRTLIALCVIALGHF 415
           +EG            +   V+KHD +TLKSL A AP G+AN+IAVFRT+IALCVIAL HF
Sbjct: 361 VEGRLLAALRILLCGELVEVEKHDSDTLKSLSAVAPFGIANEIAVFRTVIALCVIALSHF 420

Query: 416 PTQIADDESLLKQGAPGSTELAIQFRMQKKSVIIDVVRDLSRRVKLLSSKETVTA 470
           PT+I +DE+++KQG   + EL+I++R+QKKSVIIDV++DL+RRVKLLSSKET TA
Sbjct: 421 PTKIMEDEAIIKQGVSATAELSIKYRIQKKSVIIDVMKDLTRRVKLLSSKETPTA 475


>AT1G14030.1 | Symbols:  | Rubisco methyltransferase family protein
           | chr1:4805493-4807440 REVERSE LENGTH=482
          Length = 482

 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 179/449 (39%), Gaps = 58/449 (12%)

Query: 14  LRPLTCAASASRIVSHPPDLINWVTREGGFVHRAVKIAQLGSNGLGLVAKQEIPMGSELI 73
           +RP++  AS+S +  +  +   W+  +G    ++V    +   GLGLVA+++I     ++
Sbjct: 35  VRPIS--ASSSELPENVRNFWKWLRDQGVVSGKSVAEPAVVPEGLGLVARRDIGRNEVVL 92

Query: 74  VLPHHIPLQFPSLDVNPHDSALLQLVHHVPEEXXXXXXXXXXXQERAKVGSYWWPYISNL 133
            +P         L +NP      ++                  +E+ +  S W  Y+  L
Sbjct: 93  EIPKR-------LWINPETVTASKIGPLCGGLKPWVSVALFLIREKYEEESSWRVYLDML 145

Query: 134 PITYSVPIFFPGEDIKNLQYGPLLHQVNKRCRFL----LEFEQEVKRALASLTPDKHPFG 189
           P +    +F+  E++  L+   LL        ++    L+ EQE+      L P+K  F 
Sbjct: 146 PQSTDSTVFWSEEELAELKGTQLLSTTLGVKEYVENEFLKLEQEI------LLPNKDLFS 199

Query: 190 GLEVDAPSLGWAMSAVSSRAF-RLHGNKDPNGTHVDIPMMLPLIDMCNHSFNPNAKI--- 245
              +      WA   + SRAF RL G            +++PL D+ NH  NP  K    
Sbjct: 200 S-RITLDDFIWAFGILKSRAFSRLRGQN---------LVLIPLADLINH--NPAIKTEDY 247

Query: 246 ---IQEQDSSSTKMQVKVVAKTTIKEDDPLLLCYG-NLSNDLFLLDYGFVMHSNPYDYIE 301
              I+     S  +   + +   +K  + + + Y  N SN    LDYGFV  SNP     
Sbjct: 248 AYEIKGAGLFSRDLLFSLKSPVYVKAGEQVYIQYDLNKSNAELALDYGFV-ESNP----- 301

Query: 302 LKYDGAFLDAASTAAGVSSPNFSTPAPWQEHILSQLNLAGEAPDLKVSLGGQEIIEGXXX 361
                      S    +  P  S P    +  +++ N  GE     + + GQ +  G   
Sbjct: 302 --------KRNSYTLTIEIPE-SDPFFGDKLDIAESNKMGETGYFDI-VDGQTLPAGMLQ 351

Query: 362 XXXXXXXXS-DAETVQKHDLNTLKSLHAEAPLGVANDIAVFRTLIALCVIALGHFPTQIA 420
                     DA  ++    NT+   H E P+   N+  + R +   C  AL  F T I 
Sbjct: 352 YLRLVALGGPDAFLLESIFNNTIWG-HLELPVSRTNEELICRVVRDACKSALSGFDTTIE 410

Query: 421 DDESLLKQGA-PGSTELAIQFRMQKKSVI 448
           +DE LL +G      E+A++ R+ +K V+
Sbjct: 411 EDEKLLDKGKLEPRLEMALKIRIGEKRVL 439


>AT3G07670.1 | Symbols:  | Rubisco methyltransferase family protein
           | chr3:2451651-2454617 FORWARD LENGTH=504
          Length = 504

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 30/278 (10%)

Query: 33  LINWVTREGGFVHRAVKIAQLGSNGLGLVAKQEIPMGSELIVLPHHIPLQFPSLDVNPHD 92
           L NW++ + G   + + I ++     GLVA Q +  G +L+ +P  + +   S   N   
Sbjct: 77  LQNWLS-DSGLPPQKMAIDRVDIGERGLVASQNLRKGEKLLFVPPSLVISADSEWTNAEA 135

Query: 93  SALLQLVHHVPEEXXXXXXXXXXXQERAKVGSYWWPYISNLPIT-YSVPIFFPGEDIKNL 151
             +++  + VP+            +   +  S W+ YIS LP   YS+  +   E    L
Sbjct: 136 GEVMK-RYDVPD--WPLLATYLISEASLQKSSRWFNYISALPRQPYSLLYWTRTELDMYL 192

Query: 152 QYGPLLHQVNKRCRFLLEFEQEVKRALASLTPDKHP--FGGLEVDAPSLGWAMSAVSSRA 209
           +   +  +  +R   ++   ++++  + S    KHP  F     +  +  W+   + SR 
Sbjct: 193 EASQIRERAIERITNVVGTYEDLRSRIFS----KHPQLFPKEVFNDETFKWSFGILFSRL 248

Query: 210 FRLHGNKDPNGTHVDIPMMLPLIDMCNHSFNPNAKIIQEQDSSSTKMQVKVVAKTTIKED 269
            RL      +G       ++P  DM NH  N   +   + D SS     K V  TT +  
Sbjct: 249 VRLPSM---DGRFA----LVPWADMLNH--NCEVETFLDYDKSS-----KGVVFTTDRPY 294

Query: 270 DP---LLLCYGNLSNDLFLLDYGFVMH--SNPYDYIEL 302
            P   + + YGN SN   LL YGFV    +NP D +EL
Sbjct: 295 QPGEQVFISYGNKSNGELLLSYGFVPREGTNPSDSVEL 332


>AT3G55080.2 | Symbols:  | SET domain-containing protein |
           chr3:20411476-20414595 REVERSE LENGTH=353
          Length = 353

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 19/186 (10%)

Query: 124 SYWWPYISNLPITYSV-PIFFPGEDIKNLQYGPLLHQ--VNKRCRFLLEFEQEVKRALAS 180
           S W PYIS LP    +    F GED  ++     +HQ  V ++ +   +F       +A 
Sbjct: 16  SRWVPYISRLPQPAEMHSSIFWGEDELSMIRCSAVHQETVKQKAQIEKDFS-----FVAQ 70

Query: 181 LTPDKHPFGGLEVDAPSLGWAMSAVSSRAFRLHGNKDPNGTHVDIPMMLPLIDMCNHSFN 240
                 P      D     +A + V SRA+        N   +    ++P  D  NH   
Sbjct: 71  AFKQHCPIVTERPDLEDFMYAYALVGSRAWE-------NSKRIS---LIPFADFMNHDGL 120

Query: 241 PNAKIIQEQDSSSTKMQ-VKVVAKTTIKEDDPLLLCYGNLSNDLFLLDYGFVMHSNPYDY 299
             + +++++D+  ++   ++V A       D + + YG  SN   +LD+GF    N +D 
Sbjct: 121 SASIVLRDEDNQLSEFSTLQVTADRNYSPGDEVFIKYGEFSNATLMLDFGFTFPYNIHDE 180

Query: 300 IELKYD 305
           ++++ D
Sbjct: 181 VQIQMD 186