Miyakogusa Predicted Gene

Lj4g3v3112880.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3112880.1 tr|B9HJE6|B9HJE6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766170 PE=4
SV=1,45.95,1e-18,F-box,F-box domain, cyclin-like; no description,NULL;
FBOX,F-box domain, cyclin-like; seg,NULL; PUTA,CUFF.52303.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01620.1 | Symbols: MEE11 | RNI-like superfamily protein | ch...   183   1e-46
AT3G26000.1 | Symbols:  | Ribonuclease inhibitor | chr3:9507042-...   142   2e-34
AT3G27290.1 | Symbols:  | RNI-like superfamily protein | chr3:10...   123   2e-28

>AT2G01620.1 | Symbols: MEE11 | RNI-like superfamily protein |
           chr2:278204-279226 FORWARD LENGTH=292
          Length = 292

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/272 (37%), Positives = 148/272 (54%), Gaps = 37/272 (13%)

Query: 28  HEALFLVLTYL-PVYQVLAMSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKIT 86
           HE L +VL YL  ++++L+M +V ++LRDA+ ++   W  +++E PLSSRL+D+IL + +
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 87  SKANGRLKTLALMNCTHITDKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRS 146
           SK+ G+LKTL L  C  +T+KGL+RVV+ NPLI K+ +P C+G+T EG+   V++L + +
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 147 NCLSTLRINGIYNLQKEHLDMLAMNLRKNVPLEEQQMQKPNYYHKRGSFTVFSREENQRI 206
           + L TL ING+    K+HL  L                          +T  S E     
Sbjct: 137 HKLETLHINGVNGFTKQHLSAL--------------------------YTYLSSEGT--- 167

Query: 207 IDLETCPKCFEVTMVYDCPKVECMKREKPQVQCRGCKFCIPRXXXXXXXXXXXXXXXXXX 266
           IDLE CPKC EV M+  C +  C ++++   +CRGC  CIPR                  
Sbjct: 168 IDLEVCPKCDEVRMIPSCSRESCNQKQR---KCRGCWLCIPRCAECAVCLVGSDTESQEA 224

Query: 267 XXXXXXXX----WLQLPKCNFCNKPYCKQHEN 294
                       WL LPKC FCNKPYC  H +
Sbjct: 225 ACGNDDVLCLECWLVLPKCRFCNKPYCTNHSS 256


>AT3G26000.1 | Symbols:  | Ribonuclease inhibitor |
           chr3:9507042-9508542 REVERSE LENGTH=453
          Length = 453

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 9/229 (3%)

Query: 23  EQEPPHEALFLVLTYLPVYQVLAMSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEIL 82
           E    H A+   L +L    +L++S VCK+L   V +D L W ++ + RPL+ ++++E L
Sbjct: 196 EDAYVHPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEAL 255

Query: 83  VKITSKANGRLKTLALMNCTHITDKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTL 142
           + +T +A G ++ L +++C  ITD  L+RVV +N  + K+ +P CT IT +G+   ++ L
Sbjct: 256 LHLTERAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDL 315

Query: 143 CQRSNC-LSTLRINGIYNLQKEHLDMLA--MNLRKNVPLEEQQMQKPNYYHKRGSFTVFS 199
                  +  L++ G++ + K+H D L   +N+   V   +Q +QKP +YH RG   V  
Sbjct: 316 KSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKV---KQTIQKPRFYH-RGEACVSC 371

Query: 200 REENQRIIDLETCPKCFEVTMVYDCPKVECMKREKPQVQCRGCKFCIPR 248
             ++ R +D+E CPKC    +VYDCP  +C  ++K   +CR C  CI R
Sbjct: 372 --DDDRALDIEMCPKCQNFKLVYDCPAEDCKGKKKGSEECRACSLCIQR 418


>AT3G27290.1 | Symbols:  | RNI-like superfamily protein |
           chr3:10080038-10081265 REVERSE LENGTH=382
          Length = 382

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 11/227 (4%)

Query: 28  HEALFLVLTYLPVYQVLAMSQVCKALRDAVNNDVLPWLNV-IVERPLSSRLSDEILVKIT 86
           H+A  LVL YL + ++LA+  VC++LRD+V  +   W ++ + +  L  R++DE L+K+T
Sbjct: 128 HDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLT 187

Query: 87  SKANGRLKTLALMNCTHITDKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRS 146
            +A G ++ L L  C  ITD GL++V+  NP + KL +  C  ++  G+   ++ L + S
Sbjct: 188 RRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDL-KSS 246

Query: 147 NCLS--TLRINGIYNLQKEHLDMLAMNLRKNVPLEEQQMQKPNYYHKRGSFTVFSREENQ 204
           N L   +L   G     KE    L + L  +  +  Q+ +K  Y   R  F +    E+ 
Sbjct: 247 NRLGVKSLITGGALYFTKEQFKELNLLLGGDAKVGLQERKKRFYTSCRSEFYL----EDD 302

Query: 205 RIIDLETCPKCFEVTMVYDCPKVEC-MKREKP--QVQCRGCKFCIPR 248
           R+ DLE CP C + ++V+DCP   C +K + P  +  CR C  CI R
Sbjct: 303 RVTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIER 349