Miyakogusa Predicted Gene
- Lj4g3v3099330.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3099330.1 Non Chatacterized Hit- tr|C0JP27|C0JP27_LOTJA
Putative basic helix-loop-helix protein BHLH5
OS=Lotus,98.51,0,HLH,Helix-loop-helix domain; no
description,Helix-loop-helix domain; BASIC HELIX-LOOP-HELIX (BHLH)
F,NODE_58652_length_985_cov_16.006092.path2.1
(268 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 187 4e-48
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:63... 184 6e-47
AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 182 2e-46
AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 8e-38
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 140 1e-33
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 140 1e-33
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 139 3e-33
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 129 2e-30
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 129 2e-30
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 129 2e-30
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 128 4e-30
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 128 4e-30
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 128 4e-30
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 127 7e-30
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 127 8e-30
AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21... 123 1e-28
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel... 122 3e-28
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 121 5e-28
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 121 5e-28
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 120 7e-28
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:219... 120 7e-28
AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 120 8e-28
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 119 2e-27
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 117 8e-27
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 115 3e-26
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 115 3e-26
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 114 5e-26
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 97 8e-21
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 83 2e-16
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 82 3e-16
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 82 3e-16
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 76 2e-14
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 76 2e-14
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 75 3e-14
AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 8e-13
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 69 3e-12
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 69 3e-12
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l... 69 3e-12
AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 2e-11
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 66 2e-11
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 65 6e-11
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 65 6e-11
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 65 6e-11
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 65 7e-11
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 7e-11
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 64 7e-11
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 8e-11
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 64 8e-11
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 2e-10
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 2e-10
AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 3e-10
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 3e-10
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 4e-10
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 62 4e-10
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 7e-10
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 7e-10
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 1e-09
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 60 2e-09
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 58 8e-09
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 9e-09
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 55 4e-08
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 55 4e-08
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 55 4e-08
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 55 4e-08
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 55 4e-08
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 55 4e-08
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 1e-07
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 2e-07
AT1G68240.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 5e-07
AT1G68240.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 6e-07
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503... 50 1e-06
AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 50 2e-06
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896... 50 2e-06
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 50 2e-06
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 49 3e-06
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 49 4e-06
AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 5e-06
>AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=261
Length = 261
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 134/189 (70%), Gaps = 20/189 (10%)
Query: 91 SSVENEGRKRK----ATNMSGPSSANSTPSVSESESKIK-------NCSGRGKRVKKNMM 139
SS + + +KRK A + S S ++ T S S ++ I N S RGKR K
Sbjct: 79 SSSQFDTKKRKSLMEAVSTSENSVSDQTLSTSSAQVSINGNISTKNNSSRRGKRSKNREE 138
Query: 140 EEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLD 199
+K +VVHVRARRGQATDSHS+AERVRRGKINE+LKCLQ+IVPGCYKTMGMA MLD
Sbjct: 139 ----EKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLD 194
Query: 200 EIINYVQSLQHQVEFLSMKLTAASTFYDFNSEINSLEAMQRARVSEAKELAKYVTEGYEG 259
EIINYVQSLQ+QVEFLSMKLTAAS++YDFNSE +++E+MQ+A+ EA E+ +G +G
Sbjct: 195 EIINYVQSLQNQVEFLSMKLTAASSYYDFNSETDAVESMQKAKAREAVEMG----QGRDG 250
Query: 260 VSCFQ-PTW 267
S F +W
Sbjct: 251 SSVFHSSSW 259
>AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 |
chr1:6331464-6333576 FORWARD LENGTH=260
Length = 260
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 97/108 (89%)
Query: 149 VVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSL 208
VVHVRARRGQATDSHSLAERVRRGKINE+L+CLQ++VPGCYK MGMA MLDEIINYVQSL
Sbjct: 142 VVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSL 201
Query: 209 QHQVEFLSMKLTAASTFYDFNSEINSLEAMQRARVSEAKELAKYVTEG 256
Q+QVEFLSMKLTAAS+FYDFNSE +++++MQRA+ E E+ + +G
Sbjct: 202 QNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGRQTRDG 249
>AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=260
Length = 260
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 133/189 (70%), Gaps = 21/189 (11%)
Query: 91 SSVENEGRKRK----ATNMSGPSSANSTPSVSESESKIK-------NCSGRGKRVKKNMM 139
SS + + +KRK A + S S ++ T S S ++ I N S RGKR K
Sbjct: 79 SSSQFDTKKRKSLMEAVSTSENSVSDQTLSTSSAQVSINGNISTKNNSSRRGKRSKNREE 138
Query: 140 EEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLD 199
+K +VVHVRARRGQATDSHS+AERVRRGKINE+LKCLQ+IVPGCYKTMGMA MLD
Sbjct: 139 ----EKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLD 194
Query: 200 EIINYVQSLQHQVEFLSMKLTAASTFYDFNSEINSLEAMQRARVSEAKELAKYVTEGYEG 259
EIINYVQSLQ+QVEFLSMKLTAAS++YDFNSE +++E+MQ A+ EA E+ +G +G
Sbjct: 195 EIINYVQSLQNQVEFLSMKLTAASSYYDFNSETDAVESMQ-AKAREAVEMG----QGRDG 249
Query: 260 VSCFQ-PTW 267
S F +W
Sbjct: 250 SSVFHSSSW 258
>AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:8880515-8882018 REVERSE
LENGTH=223
Length = 223
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 92/119 (77%), Gaps = 1/119 (0%)
Query: 138 MMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIM 197
M +E +K VVHVRA+RGQATDSHSLAERVRR KINE+LKCLQ++VPGCYK MGMA+M
Sbjct: 90 MNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVM 149
Query: 198 LDEIINYVQSLQHQVEFLSMKLTAASTFYDFNS-EINSLEAMQRARVSEAKELAKYVTE 255
LD II+YV+SLQ+Q+EFLSMKL+AAS YD NS +I + Q + A E+ + + E
Sbjct: 150 LDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRE 208
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 94/133 (70%), Gaps = 4/133 (3%)
Query: 107 GPSSANSTPSVSESESKIKNCSGRG---KRVKKNMMEEEDKKSTQVVHVRARRGQATDSH 163
GPS+ +T +++ N S G ++ KK +++ T +HVRARRGQATDSH
Sbjct: 88 GPSAITNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSH 147
Query: 164 SLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAAS 223
SLAERVRR KI+E+++ LQN+VPGC K G A+MLDEIINYVQ+LQ QVEFLSMKLT+ S
Sbjct: 148 SLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSIS 207
Query: 224 -TFYDFNSEINSL 235
YDF S+++ L
Sbjct: 208 PVVYDFGSDLDGL 220
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 94/133 (70%), Gaps = 4/133 (3%)
Query: 107 GPSSANSTPSVSESESKIKNCSGRG---KRVKKNMMEEEDKKSTQVVHVRARRGQATDSH 163
GPS+ +T +++ N S G ++ KK +++ T +HVRARRGQATDSH
Sbjct: 88 GPSAITNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSH 147
Query: 164 SLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAAS 223
SLAERVRR KI+E+++ LQN+VPGC K G A+MLDEIINYVQ+LQ QVEFLSMKLT+ S
Sbjct: 148 SLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSIS 207
Query: 224 -TFYDFNSEINSL 235
YDF S+++ L
Sbjct: 208 PVVYDFGSDLDGL 220
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2341188-2343288 REVERSE
LENGTH=456
Length = 456
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 115/188 (61%), Gaps = 30/188 (15%)
Query: 56 FFCSSEPEFQGNLEENMPGLVHHFNQNAAPVSPPISSVENEG-------RKRKA-TNMSG 107
F ++EP N E MP + +++PV P++S G RKRK + +
Sbjct: 164 FPINNEPPITTN--EKMPRV------SSSPVFKPLASHVPAGESSGELSRKRKTKSKQNS 215
Query: 108 PSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQV------VHVRARRGQATD 161
PS+ +S+ + E E KR KK+ EE K+ + +HVRARRGQATD
Sbjct: 216 PSAVSSSKEIEEKED------SDPKRCKKS--EENGDKTKSIDPYKDYIHVRARRGQATD 267
Query: 162 SHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTA 221
SHSLAERVRR KI+E++K LQ++VPGC K G A+MLDEIINYVQSLQ QVEFLSMKL++
Sbjct: 268 SHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSS 327
Query: 222 ASTFYDFN 229
+T DFN
Sbjct: 328 VNTRLDFN 335
>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=339
Length = 339
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 24/128 (18%)
Query: 128 SGRGKRVKKNMMEEEDKKSTQ------------------------VVHVRARRGQATDSH 163
S + KR+ K+ EEEDKK +H+RARRGQAT+SH
Sbjct: 124 SKKRKRIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSH 183
Query: 164 SLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAAS 223
SLAERVRR KI+E++K LQ++VPGC K G A+MLDEIINYVQSLQ Q+EFLSMKL+A +
Sbjct: 184 SLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVN 243
Query: 224 TFYDFNSE 231
DFN E
Sbjct: 244 PVLDFNLE 251
>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 99/173 (57%), Gaps = 32/173 (18%)
Query: 89 PISSVENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRG------KRVKKNMMEEE 142
P++ ++R N+S + S+ ++K S +G KR+ K+ EEE
Sbjct: 132 PLTDASKLVKERSINNVS--EDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEE 189
Query: 143 DKKSTQ------------------------VVHVRARRGQATDSHSLAERVRRGKINEKL 178
DKK +H+RARRGQAT+SHSLAERVRR KI+E++
Sbjct: 190 DKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERM 249
Query: 179 KCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSE 231
K LQ++VPGC K G A+MLDEIINYVQSLQ Q+EFLSMKL+A + DFN E
Sbjct: 250 KFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLE 302
>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 99/173 (57%), Gaps = 32/173 (18%)
Query: 89 PISSVENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRG------KRVKKNMMEEE 142
P++ ++R N+S + S+ ++K S +G KR+ K+ EEE
Sbjct: 132 PLTDASKLVKERSINNVS--EDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEE 189
Query: 143 DKKSTQ------------------------VVHVRARRGQATDSHSLAERVRRGKINEKL 178
DKK +H+RARRGQAT+SHSLAERVRR KI+E++
Sbjct: 190 DKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERM 249
Query: 179 KCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSE 231
K LQ++VPGC K G A+MLDEIINYVQSLQ Q+EFLSMKL+A + DFN E
Sbjct: 250 KFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLE 302
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=485
Length = 485
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 72/97 (74%)
Query: 135 KKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGM 194
K+ + D +HVRARRGQAT+SHSLAERVRR KI+E++K LQ++VPGC K G
Sbjct: 285 KQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGK 344
Query: 195 AIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSE 231
A+MLDEIINYVQSLQ QVEFLSMKL + DFN E
Sbjct: 345 AVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLE 381
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 72/97 (74%)
Query: 135 KKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGM 194
K+ + D +HVRARRGQAT+SHSLAERVRR KI+E++K LQ++VPGC K G
Sbjct: 286 KQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGK 345
Query: 195 AIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSE 231
A+MLDEIINYVQSLQ QVEFLSMKL + DFN E
Sbjct: 346 AVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLE 382
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 72/97 (74%)
Query: 135 KKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGM 194
K+ + D +HVRARRGQAT+SHSLAERVRR KI+E++K LQ++VPGC K G
Sbjct: 286 KQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGK 345
Query: 195 AIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSE 231
A+MLDEIINYVQSLQ QVEFLSMKL + DFN E
Sbjct: 346 AVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLE 382
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684160-19686871 FORWARD
LENGTH=498
Length = 498
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQ 209
+HVRARRGQATDSHSLAERVRR KI E++K LQ++VPGC K G A+MLDEIINYVQSLQ
Sbjct: 299 IHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQ 358
Query: 210 HQVEFLSMKLTAAS-TFYDFN 229
QVEFLSMKL++ + T DFN
Sbjct: 359 RQVEFLSMKLSSVNDTRLDFN 379
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528933-8530655 REVERSE
LENGTH=371
Length = 371
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 100/167 (59%), Gaps = 22/167 (13%)
Query: 86 VSPPISSVENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGR---GKRVK------- 135
VS + + ++ RKRK+ + ++ S++ S SK+ +G GKR K
Sbjct: 103 VSDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSS 162
Query: 136 KNMMEEEDKKST------------QVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQN 183
KN +E+ D K +HVRARRGQATDSHSLAER RR KI+E++ LQ+
Sbjct: 163 KNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQD 222
Query: 184 IVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNS 230
+VPGC + G A+MLDEIINYVQSLQ QVEFLSMKL + +FN+
Sbjct: 223 LVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNA 269
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P |
chr1:21909464-21911030 REVERSE LENGTH=264
Length = 264
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 87/122 (71%), Gaps = 12/122 (9%)
Query: 113 STPSVSESESKIKN----CSGRGKRVKKNMMEEEDKKSTQV------VHVRARRGQATDS 162
ST SE E+K + C G+ + +++ E ++K Q+ +HVRARRGQATDS
Sbjct: 89 STIGASEGENKRQKIDEVCDGKAE--AESLGTETEQKKQQMEPTKDYIHVRARRGQATDS 146
Query: 163 HSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAA 222
HSLAER RR KI+E++K LQ++VPGC K +G A++LDEIINY+QSLQ QVEFLSMKL A
Sbjct: 147 HSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 206
Query: 223 ST 224
++
Sbjct: 207 NS 208
>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
basic-helix-loop-helix 1 | chr4:16498466-16499946
FORWARD LENGTH=335
Length = 335
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 94 ENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVR 153
E E K K T + S+ + +++ + N S +V K + + T +HVR
Sbjct: 120 EGEEEKSKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKEL------EKTDYIHVR 173
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
ARRGQATDSHS+AERVRR KI+E++K LQ++VPGC K G A MLDEIINYVQSLQ Q+E
Sbjct: 174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
Query: 214 FLSMKLTAASTFYDFN 229
FLSMKL + DF+
Sbjct: 234 FLSMKLAIVNPRPDFD 249
>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=302
Length = 302
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 93 VENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQ---V 149
V+N G R T + T + + K ++ + + K NM E Q
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDY 138
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQ 209
+HVRARRG+ATD HSLAER RR KI++K+KCLQ+IVPGC K G A MLDEIINYVQSLQ
Sbjct: 139 IHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQ 198
Query: 210 HQVEFLSMKLTAASTFYDFNSEINSLEAMQ 239
QVEFLSMKL+ + + I+ L A Q
Sbjct: 199 QQVEFLSMKLSVINP--ELECHIDDLSAKQ 226
>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=304
Length = 304
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 93 VENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQ---V 149
V+N G R T + T + + K ++ + + K NM E Q
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDY 138
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQ 209
+HVRARRG+ATD HSLAER RR KI++K+KCLQ+IVPGC K G A MLDEIINYVQSLQ
Sbjct: 139 IHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQ 198
Query: 210 HQVEFLSMKLTAASTFYDFNSEINSLEAMQ 239
QVEFLSMKL+ + + I+ L A Q
Sbjct: 199 QQVEFLSMKLSVINP--ELECHIDDLSAKQ 226
>AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304228-3305984 REVERSE
LENGTH=366
Length = 366
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 79/115 (68%), Gaps = 7/115 (6%)
Query: 119 ESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKL 178
+S+ K KN + + V K + E+ +H+RARRGQAT+SHSLAERVRR KI+E++
Sbjct: 174 QSQKKHKNDQSK-ETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERM 232
Query: 179 KCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFYDFNSEIN 233
+ LQ +VPGC K G A+MLDEIINYVQSLQ QVEFLSMKL N EIN
Sbjct: 233 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV------NPEIN 281
>AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P |
chr1:21909635-21911030 REVERSE LENGTH=343
Length = 343
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 87/122 (71%), Gaps = 12/122 (9%)
Query: 113 STPSVSESESKIKN----CSGRGKRVKKNMMEEEDKKSTQV------VHVRARRGQATDS 162
ST SE E+K + C G+ + +++ E ++K Q+ +HVRARRGQATDS
Sbjct: 89 STIGASEGENKRQKIDEVCDGKAE--AESLGTETEQKKQQMEPTKDYIHVRARRGQATDS 146
Query: 163 HSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTAA 222
HSLAER RR KI+E++K LQ++VPGC K +G A++LDEIINY+QSLQ QVEFLSMKL A
Sbjct: 147 HSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 206
Query: 223 ST 224
++
Sbjct: 207 NS 208
>AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=379
Length = 379
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 67/88 (76%)
Query: 142 EDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEI 201
E+ + VHVRARRGQATDSHSLAER RR KIN ++K LQ +VPGC K G A++LDEI
Sbjct: 194 EENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEI 253
Query: 202 INYVQSLQHQVEFLSMKLTAASTFYDFN 229
IN+VQSLQ QVE LSM+L A + DFN
Sbjct: 254 INHVQSLQRQVEMLSMRLAAVNPRIDFN 281
>AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17624635 FORWARD
LENGTH=327
Length = 327
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 14/125 (11%)
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQ 209
VHVRARRGQATD+HSLAER RR KIN ++K LQ +VPGC K G A++LDEIIN+VQ+LQ
Sbjct: 183 VHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQ 242
Query: 210 HQVEFLSMKLTAASTFYDFNSEINSLEAMQRARVSEAK-------ELAKYVTEGYEGVSC 262
QVE LSM+L A + DFN ++S+ A + + + +L ++ +GY
Sbjct: 243 RQVEMLSMRLAAVNPRIDFN--LDSILASENGSLMDGSFNAESYHQLQQWPFDGYH---- 296
Query: 263 FQPTW 267
QP W
Sbjct: 297 -QPEW 300
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25133117-25134600 REVERSE
LENGTH=281
Length = 281
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 61/70 (87%)
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQ 209
+HVRARRGQATD HSLAER RR KI+EK+ LQ+I+PGC K +G A++LDEIINY+QSLQ
Sbjct: 151 IHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQ 210
Query: 210 HQVEFLSMKL 219
QVEFLSMKL
Sbjct: 211 RQVEFLSMKL 220
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=337
Length = 337
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 72/108 (66%), Gaps = 6/108 (5%)
Query: 118 SESESKIKNCSGRGKRVKKNMMEEEDKKST------QVVHVRARRGQATDSHSLAERVRR 171
+E+ES +K S G + +E K +HVRARRGQATD HSLAER RR
Sbjct: 145 AETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARR 204
Query: 172 GKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKL 219
KI++K+K LQ+IVPGC K G A MLDEIINYVQ LQ QVEFLSMKL
Sbjct: 205 EKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKL 252
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=335
Length = 335
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 72/108 (66%), Gaps = 6/108 (5%)
Query: 118 SESESKIKNCSGRGKRVKKNMMEEEDKKST------QVVHVRARRGQATDSHSLAERVRR 171
+E+ES +K S G + +E K +HVRARRGQATD HSLAER RR
Sbjct: 145 AETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARR 204
Query: 172 GKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKL 219
KI++K+K LQ+IVPGC K G A MLDEIINYVQ LQ QVEFLSMKL
Sbjct: 205 EKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKL 252
>AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952546-7954446 REVERSE
LENGTH=364
Length = 364
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 59/72 (81%)
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQ 209
+HVRARRGQATD HSLAER RR KI++K+K LQ+IVPGC K G A MLDEIINYVQ LQ
Sbjct: 183 IHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQ 242
Query: 210 HQVEFLSMKLTA 221
QVEFLSMKL
Sbjct: 243 RQVEFLSMKLAV 254
>AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=426
Length = 426
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 67/135 (49%), Gaps = 47/135 (34%)
Query: 142 EDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYK----------- 190
E+ + VHVRARRGQATDSHSLAER RR KIN ++K LQ +VPGC K
Sbjct: 194 EENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIK 253
Query: 191 ------------------------------------TMGMAIMLDEIINYVQSLQHQVEF 214
G A++LDEIIN+VQSLQ QVE
Sbjct: 254 VCFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEM 313
Query: 215 LSMKLTAASTFYDFN 229
LSM+L A + DFN
Sbjct: 314 LSMRLAAVNPRIDFN 328
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
VRARRGQATD HS+AER+RR +I E++K LQ +VP KT A MLDEII+YV+ LQ Q
Sbjct: 130 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEIIDYVKFLQLQ 188
Query: 212 VEFLSM 217
V+ LSM
Sbjct: 189 VKVLSM 194
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
Query: 148 QVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQS 207
Q VRARRGQATD HS+AER+RR +I E++K LQ +VP KT A MLDEII YV+
Sbjct: 95 QKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEIIEYVRF 153
Query: 208 LQHQVEFLSM-KLTAASTFYDFNSEINSLEAMQRARV 243
LQ QV+ LSM +L A + +N L A R+
Sbjct: 154 LQLQVKVLSMSRLGGAGS---VGPRLNGLSAEAGGRL 187
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
+RARRGQATD HS+AER+RR +I E++K LQ +VP KT A MLDEII+YV+ LQ Q
Sbjct: 138 IRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEIIDYVKFLQLQ 196
Query: 212 VEFLSM-KLTAASTFYDFNSE 231
V+ LSM +L A++ SE
Sbjct: 197 VKVLSMSRLGGAASVSSQISE 217
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 98 RKRKATNMSGPS-----SANSTPSVSESESKIKNCSGRGKRVKKNMMEEE------DKKS 146
RK KA M+ P+ +++S S SE E + N R ++ ++ +E + K
Sbjct: 213 RKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQ 272
Query: 147 TQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQ 206
+V +R +A + H+L+ER RR +INE++K LQ ++P C K+ A MLDE I Y++
Sbjct: 273 ARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMK 331
Query: 207 SLQHQVEFLSM 217
SLQ Q++ +SM
Sbjct: 332 SLQLQIQMMSM 342
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 98 RKRKATNMSGPS-----SANSTPSVSESESKIKNCSGRGKRVKKNMMEEE------DKKS 146
RK KA M+ P+ +++S S SE E + N R ++ ++ +E + K
Sbjct: 213 RKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQ 272
Query: 147 TQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQ 206
+V +R +A + H+L+ER RR +INE++K LQ ++P C K+ A MLDE I Y++
Sbjct: 273 ARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMK 331
Query: 207 SLQHQVEFLSM 217
SLQ Q++ +SM
Sbjct: 332 SLQLQIQMMSM 342
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 12/131 (9%)
Query: 98 RKRKATNMSGPS-----SANSTPSVSESESKIKNCSGRGKRVKKNMMEEE------DKKS 146
RK KA M+ P+ +++S S SE E + N R ++ ++ +E + K
Sbjct: 142 RKGKAVAMTAPAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQ 201
Query: 147 TQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQ 206
+V +R +A + H+L+ER RR +INE++K LQ ++P C K+ A MLDE I Y++
Sbjct: 202 ARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMK 260
Query: 207 SLQHQVEFLSM 217
SLQ Q++ +SM
Sbjct: 261 SLQLQIQMMSM 271
>AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17623469 FORWARD
LENGTH=233
Length = 233
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 150 VHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYK 190
VHVRARRGQATD+HSLAER RR KIN ++K LQ +VPGC K
Sbjct: 183 VHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDK 223
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 102 ATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATD 161
++ GPS + S S+ S I++ + V++ + + + ++R ++ +
Sbjct: 288 GNSLDGPSESPSL-SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAE 346
Query: 162 SHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTA 221
H+L+ER RR +INEK++ LQ ++P C K + A MLDE I Y++SLQ QV+ +SM
Sbjct: 347 VHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQIMSM---- 401
Query: 222 ASTFY 226
AS +Y
Sbjct: 402 ASGYY 406
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 102 ATNMSGPSSANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATD 161
++ GPS + S S+ S I++ + V++ + + + ++R ++ +
Sbjct: 288 GNSLDGPSESPSL-SLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAE 346
Query: 162 SHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLTA 221
H+L+ER RR +INEK++ LQ ++P C K + A MLDE I Y++SLQ QV+ +SM
Sbjct: 347 VHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQIMSM---- 401
Query: 222 ASTFY 226
AS +Y
Sbjct: 402 ASGYY 406
>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
1 | chr2:19295617-19297678 REVERSE LENGTH=416
Length = 416
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 137 NMMEEEDKKSTQVVHVRAR-----RGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKT 191
N +E D TQV H R R R ++T+ H L ER RR + N+K++ LQ+++P CYK
Sbjct: 204 NSDDESDDAKTQV-HARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKD 262
Query: 192 MGMAIMLDEIINYVQSLQHQVEFLSM 217
A +LDE I Y+++LQ QV+ +SM
Sbjct: 263 -DKASLLDEAIKYMRTLQLQVQMMSM 287
>AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=297
Length = 297
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 144 KKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIIN 203
++ST VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A M+DEI++
Sbjct: 131 QQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVD 189
Query: 204 YVQSLQHQVEFLSM-KLTAASTFYDFNSEI 232
YV+ L+ QV+ LSM +L A +E+
Sbjct: 190 YVKFLRLQVKVLSMSRLGGAGAVAPLVTEM 219
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=302
Length = 302
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
Query: 144 KKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIIN 203
++ST VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A M+DEI++
Sbjct: 136 QQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVD 194
Query: 204 YVQSLQHQVEFLSM-KLTAASTFYDFNSEI 232
YV+ L+ QV+ LSM +L A +E+
Sbjct: 195 YVKFLRLQVKVLSMSRLGGAGAVAPLVTEM 224
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 135 KKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGM 194
+ M +EE+KK+ V +R +A H+ +ER RR KIN+++K LQ +VP KT
Sbjct: 190 RPQMEDEEEKKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKT-DK 248
Query: 195 AIMLDEIINYVQSLQHQVEFLS 216
A MLDE+I Y++ LQ QV +S
Sbjct: 249 ASMLDEVIEYLKQLQAQVSMMS 270
>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 204
Query: 212 VEFLSM 217
V+ LSM
Sbjct: 205 VKVLSM 210
>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 146 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 204
Query: 212 VEFLSM 217
V+ LSM
Sbjct: 205 VKVLSM 210
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 136 KNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMA 195
+N EE + ST ++R +A H L+ER RR KINE +K LQ ++P C KT +
Sbjct: 260 ENQGTEEARDSTS-----SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKT-DRS 313
Query: 196 IMLDEIINYVQSLQHQVEFLSM 217
MLD++I YV+SLQ Q++ SM
Sbjct: 314 SMLDDVIEYVKSLQSQIQMFSM 335
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
RA +G ATD SL R RR KINE+LK LQN+VP K + ++ ML+E ++YV+ LQ Q
Sbjct: 167 TRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTK-VDISTMLEEAVHYVKFLQLQ 225
Query: 212 VEFLS 216
++ LS
Sbjct: 226 IKLLS 230
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
+RA+RG AT S+AERVRR KI+E+++ LQ++VP A MLD + Y++ LQ Q
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQ 363
Query: 212 VEFL 215
V+ L
Sbjct: 364 VKAL 367
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
RA RG ATD SL R RR +INE+L+ LQN+VP K + ++ ML+E ++YV+ LQ Q
Sbjct: 266 TRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTK-VDISTMLEEAVHYVKFLQLQ 324
Query: 212 VEFLS 216
++ LS
Sbjct: 325 IKLLS 329
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 136 KNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMA 195
+N+ME+ + VRA+RG AT S+AERVRR +I+++++ LQ +VP K A
Sbjct: 173 ENLMED-----SVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTA 227
Query: 196 IMLDEIINYVQSLQHQVEFLS 216
ML+E + YV+ LQ Q++ L+
Sbjct: 228 DMLEEAVEYVKVLQRQIQELT 248
>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140117
REVERSE LENGTH=247
Length = 247
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
VRARRGQATD HS+AER+RR +I E+++ LQ +VP KT A M+DEI++YV+ L+ Q
Sbjct: 83 VRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 141
Query: 212 VEFLSM-KLTAASTFYDFNSEI 232
V+ LSM +L A +++
Sbjct: 142 VKVLSMSRLGGAGAVAPLVTDM 163
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
VRA+RG AT S+AERVRR +I+++++ LQ +VP K A ML+E + YV++LQ Q
Sbjct: 181 VRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQ 240
Query: 212 VEFLS 216
++ L+
Sbjct: 241 IQELT 245
>AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931680-17935639 REVERSE
LENGTH=309
Length = 309
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
RA+RG AT S+AER RR +I+ KLK LQ +VP K A MLD + +++ LQHQ
Sbjct: 231 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 290
Query: 212 VEFL 215
VE L
Sbjct: 291 VESL 294
>AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17932376-17935639 REVERSE
LENGTH=297
Length = 297
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
RA+RG AT S+AER RR +I+ KLK LQ +VP K A MLD + +++ LQHQ
Sbjct: 233 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 292
Query: 212 VE 213
VE
Sbjct: 293 VE 294
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611428-17613163 REVERSE
LENGTH=359
Length = 359
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
+RA+RG AT S+AERVRR +I+E+++ LQ +VP K + MLD ++Y++ LQ Q
Sbjct: 279 IRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQ 338
Query: 212 VEFL 215
+ L
Sbjct: 339 YKIL 342
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 127 CSGRGKRVKKNMMEEEDKKSTQVVHV----RARRGQATDSHSLAERVRRGKINEKLKCLQ 182
CS + +ED + ++ +++ RA RG ATD SL R RR +INE+L+ LQ
Sbjct: 208 CSDDESNGGDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQ 267
Query: 183 NIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLS 216
++VP K + ++ ML+E + YV+ LQ Q++ LS
Sbjct: 268 HLVPNGTK-VDISTMLEEAVQYVKFLQLQIKLLS 300
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Query: 155 RRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQV-- 212
+R +A + H+LAER RR KINE++K LQ ++P C K+ ++ ML+++I YV+SL+ Q+
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVS-MLEDVIEYVKSLEMQINQ 205
Query: 213 --EFLSMKLTAASTFYDFNSE 231
++M + + F S+
Sbjct: 206 FMPHMAMGMNQPPAYIPFPSQ 226
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 155 RRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE- 213
+R + + H+LAER RR KINEK+K LQ ++P C K+ ++ LD+ I YV+SLQ Q++
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVST-LDDAIEYVKSLQSQIQG 310
Query: 214 FLSMKLTAAST 224
+S + A +T
Sbjct: 311 MMSPMMNAGNT 321
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 136 KNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMA 195
+N EE + ST ++R +A H L+ER RR KINE +K LQ ++P C KT +
Sbjct: 260 ENQGTEEARDSTS-----SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKT-DRS 313
Query: 196 IMLDEIINYVQSLQHQVEFLSMKL 219
MLD++I YV+SLQ Q++ +++
Sbjct: 314 SMLDDVIEYVKSLQSQIQGKHLRI 337
>AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1744843-1747427 FORWARD
LENGTH=362
Length = 362
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 152 VRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQ 211
+RA+RG AT S+AER RR +I+ KLK LQ++VP K + MLD + +++ LQHQ
Sbjct: 283 IRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQ 342
Query: 212 VEFL 215
++ L
Sbjct: 343 LQNL 346
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 158 QATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSM 217
+A + H+L+E+ RR +INEK+K LQ+++P KT A MLDE I Y++ LQ QV+ L+M
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQMLTM 255
Query: 218 K 218
+
Sbjct: 256 R 256
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
Query: 86 VSPPISSVENEGRKRKA---TNMSGPSSANSTPSVSESESKIKNCSGR-----GKRVKKN 137
+ PP SS E R+ T + PSS + +VS +E+ + SG G V +
Sbjct: 10 LPPPSSSDELSSFLRQILSRTPTAQPSSPPKSTNVSSAETFFPSVSGGAVSSVGYGVSET 69
Query: 138 MMEE---EDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGM 194
++ E K+S +R H+L+E+ RR KINEK+K LQ ++P KT
Sbjct: 70 GQDKYAFEHKRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKT-DK 128
Query: 195 AIMLDEIINYVQSLQHQVEFLSM 217
A MLDE I Y++ LQ QV+ L++
Sbjct: 129 ASMLDEAIEYLKQLQLQVQTLAV 151
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 51 FSSGSFFCSSEPEFQGNLEENMPGLVHHFNQNAAPVSPPISSVENEGRKRKATNMSGPSS 110
FSS FF Q N + G H N+N + S ++ + RK +S S+
Sbjct: 40 FSSDDFFPFGTI-LQSNYAAVLDGSNHQTNRN-------VDSRQDLLKPRKKQKLSSESN 91
Query: 111 ANSTPSVSESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVR 170
+ P + + + + K + KS + +A RG A+D SL R R
Sbjct: 92 LVTEPKTAWRDGQSLSSYNSSDDEKALGLVSNTSKSLKR-KAKANRGIASDPQSLYARKR 150
Query: 171 RGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLS 216
R +IN++LK LQ++VP K + ++ ML++ ++YV+ LQ Q++ LS
Sbjct: 151 RERINDRLKTLQSLVPNGTK-VDISTMLEDAVHYVKFLQLQIKLLS 195
>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
RR +A + H+L+ER RR +INE++K LQ ++P C +T A +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 214 FLSM 217
+ M
Sbjct: 311 VMWM 314
>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
RR +A + H+L+ER RR +INE++K LQ ++P C +T A +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 214 FLSM 217
+ M
Sbjct: 311 VMWM 314
>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
RR +A + H+L+ER RR +INE++K LQ ++P C +T A +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 214 FLSM 217
+ M
Sbjct: 311 VMWM 314
>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
Length = 442
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
RR +A + H+L+ER RR +INE++K LQ ++P C +T A +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 214 FLSM 217
+ M
Sbjct: 311 VMWM 314
>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
Length = 430
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 155 RRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEF 214
RR +A + H+L+ER RR +INE++K LQ ++P C KT A +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQV 312
Query: 215 L 215
+
Sbjct: 313 M 313
>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
Length = 428
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 155 RRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEF 214
RR +A + H+L+ER RR +INE++K LQ ++P C KT A +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQV 312
Query: 215 L 215
+
Sbjct: 313 M 313
>AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=341
Length = 341
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 127 CSGRGKRVKKNMMEEEDKKSTQVVHV----RARRGQATDSHSLAERV------------- 169
CS + +ED + ++ +++ RA RG ATD SL R+
Sbjct: 208 CSDDESNGGDTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARLKQLNKVHCMMVQK 267
Query: 170 RRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLS 216
RR +INE+L+ LQ++VP K + ++ ML+E + YV+ LQ Q++ LS
Sbjct: 268 RRERINERLRILQHLVPNGTK-VDISTMLEEAVQYVKFLQLQIKLLS 313
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 159 ATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFL 215
+TD ++A R RR +I+EK++ LQ +VPG K M A MLDE NY++ L+ QV+ L
Sbjct: 276 STDPQTVAARQRRERISEKIRVLQTLVPGGTK-MDTASMLDEAANYLKFLRAQVKAL 331
>AT1G68240.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25575179-25576066 REVERSE
LENGTH=185
Length = 185
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 134 VKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMG 193
K N E+ D++ + + A+R ++ + + E+ RR +I +K+ LQ ++P
Sbjct: 43 TKNNDHEKHDEEPDEESYRMAKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPD 102
Query: 194 MAIMLDEIINYVQSLQHQVEFLSMKLTAASTF 225
+A L+ II Y++SL++QV+ +SM T +
Sbjct: 103 LASKLENIIEYIKSLKYQVDVMSMAYTTTPVY 134
>AT1G68240.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25575280-25576066 REVERSE
LENGTH=174
Length = 174
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 51/92 (55%)
Query: 134 VKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMG 193
K N E+ D++ + + A+R ++ + + E+ RR +I +K+ LQ ++P
Sbjct: 43 TKNNDHEKHDEEPDEESYRMAKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPD 102
Query: 194 MAIMLDEIINYVQSLQHQVEFLSMKLTAASTF 225
+A L+ II Y++SL++QV+ +SM T +
Sbjct: 103 LASKLENIIEYIKSLKYQVDVMSMAYTTTPVY 134
>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
chr5:15036197-15037574 FORWARD LENGTH=307
Length = 307
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 35/215 (16%)
Query: 41 SILNMQNLMQFSSGSFFC--------------SSEPEFQGNLEENMPGLVHHFNQNAAP- 85
+I + +LM F++ SFF + P GN+ + G HH + +P
Sbjct: 61 TIEDHNSLMDFNASSFFTFDNHRSLISPVTNGGAFPVVDGNMSYSYDGWSHHQVDSISPR 120
Query: 86 -VSPPISSVENEGRKRKATNMSGPSSANSTPSVSESESKIKNCSGR----------GKRV 134
+ P S + +MS P++ + S S I N R KR
Sbjct: 121 VIKTPNSFETTSSFGLTSNSMSKPATNHGNGDWLYSGSTIVNIGSRHESTSPKLAGNKRP 180
Query: 135 KKNMMEEEDKKSTQVVHVRARRGQAT---DSHSLAERVRRGKINEKLKCLQNIVPGCYKT 191
+ KK + + + + T D SLA + RR +I+E+LK LQ +VP K
Sbjct: 181 FTGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTK- 239
Query: 192 MGMAIMLDEIINYVQSLQHQVEFLSMKLTAASTFY 226
+ + ML++ I YV+ LQ QV+ L AA F+
Sbjct: 240 VDLVTMLEKAIGYVKFLQVQVKVL-----AADEFW 269
>AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990495 REVERSE LENGTH=346
Length = 346
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
+R + ++++ ER +R IN+K++ LQN++P +K + MLDE INY+ +LQ QV+
Sbjct: 167 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNES-MLDEAINYMTNLQLQVQ 225
Query: 214 FLSM 217
++M
Sbjct: 226 MMTM 229
>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=912
Length = 912
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 159 ATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEF 214
+TD S+A R RR +I+++ K LQ++VPG K M MLDE I+YV+ L+ Q+ +
Sbjct: 44 STDPQSVAARDRRHRISDRFKILQSMVPGGAK-MDTVSMLDEAISYVKFLKAQIWY 98
>AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990546 REVERSE LENGTH=363
Length = 363
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
+R + ++++ ER +R IN+K++ LQN++P +K + MLDE INY+ +LQ QV+
Sbjct: 184 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNES-MLDEAINYMTNLQLQVQ 242
Query: 214 FLSM 217
++M
Sbjct: 243 MMTM 246
>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640031 REVERSE LENGTH=278
Length = 278
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
RRG+A H+ +ER RR +IN++++ LQ ++P K ++I LD++I +++ LQ QV+
Sbjct: 74 GRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSI-LDDVIEHLKQLQAQVQ 132
Query: 214 FLSMK 218
F+S++
Sbjct: 133 FMSLR 137
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 154 ARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVE 213
RRG+A H+ +ER RR +IN++++ LQ ++P K ++I LD++I +++ LQ QV+
Sbjct: 162 GRRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSI-LDDVIEHLKQLQAQVQ 220
Query: 214 FLSMK 218
F+S++
Sbjct: 221 FMSLR 225
>AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14225335-14227840 FORWARD
LENGTH=544
Length = 544
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 119 ESESKIKNCSGRGKRVKKNMMEEEDKKSTQVVHVRARRGQATDSHSLAERVRRGKINEKL 178
E E+KI R + + + EE ST +R +A D H+L+ER RR +INE++
Sbjct: 323 ERETKITEDKKREETIAEIQGTEEAHGSTS-----RKRSRAADMHNLSERRRRERINERM 377
Query: 179 KCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLS 216
K LQ ++P C KT ++ ML+++I YV+SLQ Q++ +S
Sbjct: 378 KTLQELLPRCRKTDKVS-MLEDVIEYVKSLQLQIQMMS 414