Miyakogusa Predicted Gene
- Lj4g3v3099320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3099320.1 Non Chatacterized Hit- tr|I1IYK2|I1IYK2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,32.85,3e-18,CRS1_YhbY,RNA-binding, CRM domain; no
description,RNA-binding, CRM domain; YhbY-like,RNA-binding,
CR,CUFF.52270.1
(741 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 727 0.0
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c... 436 e-122
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 436 e-122
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 433 e-121
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 424 e-119
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl... 371 e-103
AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 74 3e-13
AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 74 3e-13
AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 73 6e-13
AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 72 1e-12
AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 65 1e-10
AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (C... 53 9e-07
AT4G31010.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 51 3e-06
AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 50 4e-06
AT4G31010.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-c... 50 5e-06
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/650 (58%), Positives = 469/650 (72%), Gaps = 38/650 (5%)
Query: 81 NAIDRVVHRLRKLGSNSHH------------DEDEPPPHDG------FLRREWVRPDAPM 122
NAI+R+V RLR LG S + + P G L+REWVRPD +
Sbjct: 132 NAIERIVLRLRNLGLGSDDEDDVEDDEGGGINGGDVKPVTGEERLGDLLKREWVRPDMML 191
Query: 123 AVD--------TVLPWE-NDEELPRVRGEDEGGKG-LRKKTVKAPSLAELALGVDEVKRL 172
A +LPWE N+EE R EGG ++K+ +APSLAEL + E++RL
Sbjct: 192 AEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAELTVEDSELRRL 251
Query: 173 RRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLAQQIVERRTR 232
RR GM ++ R+++PKAGLTQAV+ KI+ WR E+VRLKFHE+LA++MK A +IVERRT
Sbjct: 252 RRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTG 311
Query: 233 GLIIWSSGSVLWVYRGRNYEGP-IPSNQWNGKGGDDRLLVTDVSLDSN-ATSSLPEKSXX 290
G++IW +GSV+ VYRG +Y+GP + SNQ G + L V DVS + AT++ +S
Sbjct: 312 GMVIWRAGSVMVVYRGLDYKGPPVISNQMAGP--KETLFVPDVSSAGDEATNAKDNQSAP 369
Query: 291 XXXXX------XXXXXMTPEEAEFDRMLDDFGPRFVEWWGTGILPVDADLLPPKVTGYKA 344
MT EE EF+ +LD GPRF EWWGTG+LPVDADLLPP + GYK
Sbjct: 370 LVIKDPIIKNPIRKENMTEEEVEFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKT 429
Query: 345 PLRLLPAGMRSRITEDELTKLRKLSKALPCHFALGRNRDLQGLACAILKLWEKSLVAKIA 404
P RLLP GMRS +T E+T LRK+ K LPCHFALGRNR+ QGLA AIL++WEKSL+AKIA
Sbjct: 430 PFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIA 489
Query: 405 VKRGIQNTNNELMADELKKLTGGALLLRNKYFIVIYRGKDFVPTSVAAVLAERQELTKQV 464
VKRGIQNTNN+LMADE+K LTGG LLLRNKY+IVIYRGKDF+P+SVAA LAERQELTK++
Sbjct: 490 VKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEI 549
Query: 465 QDAEEKVRCRTVDETLSGEDDANGQAGSLAEFYEAQARWGRDISNKEREKMMKEATEAKN 524
QD EE+VR R ++ D +AG+LAEFYEAQARWG++I+ REKM++EA+ N
Sbjct: 550 QDVEERVRNREIEAVQPVGDKVPAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVAN 609
Query: 525 VRLIKKVELKLASAQAKRLRAEKLLAKVEASLVPAVPXXXXXXXXXXXXXMFRSVGLTMK 584
R++K+++ KL AQ+K RAEKLL+K+EAS++P P MFR VGL MK
Sbjct: 610 ARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMK 669
Query: 585 AYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDR 644
AYL +G RGVFDGVIENMHLHW+HRELVKLI+KQK AFVE+TARLLEYESGG+LVAI++
Sbjct: 670 AYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEK 729
Query: 645 LPKGFSLIYYRGKNYRRPISLWPRNLLTKAKALQRSINMQRHEALSQHIT 694
+PKGF+LIYYRGKNYRRPISL PRNLLTKAKAL+RSI MQRHEALSQHI+
Sbjct: 730 VPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHIS 779
>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
chr4:8337390-8341057 REVERSE LENGTH=907
Length = 907
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 258/635 (40%), Positives = 367/635 (57%), Gaps = 65/635 (10%)
Query: 112 RREWVRPDAPMAV-----DTVLPWENDEELPR---VRGEDEGGKGLRKKTVKAPSLAELA 163
RR ++P V + PWE + + V GE K R SLAE+
Sbjct: 168 RRGGFSEESPFGVYGGNDEVKFPWEKVSSMEKKELVNGEWTAKKESRY------SLAEMT 221
Query: 164 LGVDEVKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLA 223
L E+ RLR V K ++ V AG+TQAV+ I W+ E+VRLK A NM+
Sbjct: 222 LSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRM 281
Query: 224 QQIVERRTRGLIIWSSGSVLWVYRGRNYEGPIPSNQWNGKGGDDRLLVTDVS-LDSNATS 282
+I+ER+T GL+IW SG+ + +Y NY+G SN+ +G G ++ + L S+ +
Sbjct: 282 HEILERKTGGLVIWRSGTSIALY---NYKGG--SNR-DGSGNMNKQVYRRAERLPSSLPT 335
Query: 283 SLPEKSXXXXXXXXXXXXMT---------PEEAEF----DRMLDDFGPRFVEWWGTGILP 329
S ++S T P+E E+ + +L+ GPR+ +W G LP
Sbjct: 336 STVDQSVQLVNLPQLEKEPTVVGNKDRTSPQEVEYEDEINELLEGLGPRYTDWQGGYPLP 395
Query: 330 VDADLLPPKVTGYKAPLRLLPAGMRSRITEDELTKLRKLSKALPCHFALGRNRDLQGLAC 389
VDADLLP V GY+ P R LP G+RS + E T LR+++ LP HFALGR+R LQGLA
Sbjct: 396 VDADLLPGIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLAT 455
Query: 390 AILKLWEKSLVAKIAVKRGIQNTNNELMADELKKLTGGALLLRNKYFIVIYRGKDFVPTS 449
A++KLW+KSL+AK+A+KRG+Q T +E MA+++K+LTGG LL RNK F+V YRGK F+
Sbjct: 456 AMVKLWQKSLIAKVALKRGVQLTTSERMAEDIKRLTGGMLLSRNKDFLVFYRGKSFLSLE 515
Query: 450 VAAVLAERQELTKQVQDAEEKVRCRTVDETLSGEDDANGQ-------------------- 489
V L E++ L + +QD EE+ R R + AN Q
Sbjct: 516 VGEALMEKEMLVRTLQDEEEQARLRASSALVVPSIKANQQLARTLQDKEEQARPSALVLP 575
Query: 490 ----------AGSLAEFYEAQARWGRDISNKER-EKMMKEATEAKNVRLIKKVELKLASA 538
AG+L E +A +WG+++ N + E+M +E + ++ +L++K+E KLA A
Sbjct: 576 STKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRSAKLVRKLERKLAFA 635
Query: 539 QAKRLRAEKLLAKVEASLVPAVPXXXXXXXXXXXXXMFRSVGLTMKAYLQLGTRGVFDGV 598
+ K L+AE+ LAKVE SL PA MF+ +GL MKA+L LG RGVFDG
Sbjct: 636 EKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGT 695
Query: 599 IENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGILVAIDRLPKGFSLIYYRGKN 658
+ENMHLHW++REL+K++ K KTL + A LE ESGGILV++D++ KG+++I YRGK+
Sbjct: 696 VENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKD 755
Query: 659 YRRPISLWPRNLLTKAKALQRSINMQRHEALSQHI 693
Y+RP +L P+NLLTK KAL RS+ +Q+ EAL +HI
Sbjct: 756 YKRPTTLRPKNLLTKRKALARSLELQKREALIKHI 790
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 235/564 (41%), Positives = 344/564 (60%), Gaps = 31/564 (5%)
Query: 150 RKKTVKAPSLAELALGVDEVKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVR 209
RKK K PSLAEL L E++RLR VG+ + +++ + KAG+T+ +++ IH WR EVV+
Sbjct: 152 RKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVK 211
Query: 210 LKFHELLAQNMKLAQQIVERRTRGLIIWSSGSVLWVYRGRNYEGP-------IPSNQWNG 262
+ ++ NMK ++E +T GL+IW SGS + +YRG NY+ P + +G
Sbjct: 212 IFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASG 271
Query: 263 KGGDDRLLVTDVSLDSNATSSLPEKSXXXXXXXXXXXXMTPEEAEF------------DR 310
D+ +V S A SS P + +P++ F DR
Sbjct: 272 ASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADR 331
Query: 311 MLDDFGPRFVEWWGTGILPVDADLLPPKVTGYKAPLRLLPAGMRSRITEDELTKLRKLSK 370
+L+ GPRF +WW LPVD DLLP V Y+ P RLLP G+ ++T+DE+T +R+L +
Sbjct: 332 LLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGR 391
Query: 371 ALPCHFALGRNRDLQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMADELKKLTGGALL 430
LPCHFALGRNR+LQGLA AI+KLWEK +AKIAVKRG+QNTN+ELMA+ELK LTGG L+
Sbjct: 392 PLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLI 451
Query: 431 LRNKYFIVIYRGKDFVPTSVAAVLAERQELTKQVQDAEEKVRCRTVDETLSGEDDANGQA 490
R+K FIV+YRGKDF+P++V++ + ER+ T ++++ +V E++ +
Sbjct: 452 SRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENS-------SVHGNKLTENEEEIKP 504
Query: 491 GSLAEFYEAQARWGRD-ISNKEREKMMKEATEAKNVRLIKKVELKLASAQAKRLRAEKLL 549
++ E E +A+ +D I + + + + EA +++K +KL+ A K+ AEK+L
Sbjct: 505 RAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEA----ILEKTSMKLSMALEKKANAEKVL 560
Query: 550 AKVEASLVPAVPXXXXXXXXXXXXXMFRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHR 609
A +E P + M R +GL MK +L LG RGVFDG IENMHLHW++R
Sbjct: 561 ADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYR 620
Query: 610 ELVKLITKQKTLAFVEDTARLLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPISLWPRN 669
ELVK+I + ++ A +LE ESGGILVA++ + KG+++I YRGKNY RP L P+
Sbjct: 621 ELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQT 680
Query: 670 LLTKAKALQRSINMQRHEALSQHI 693
LL+K +AL+RS+ QR ++L H+
Sbjct: 681 LLSKREALKRSVEAQRRKSLKLHV 704
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/553 (43%), Positives = 348/553 (62%), Gaps = 19/553 (3%)
Query: 158 SLAELALGVDEVKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLA 217
SLAE+ L E++RLR + ++ + G+TQ + I W++ E+VRLK A
Sbjct: 215 SLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASA 274
Query: 218 QNMKLAQQIVERRTRGLIIWSSGSVLWVYRGRNYEGPIPSNQWNGKGGDDRLLVTDVSLD 277
NM+ +I+E++T GL+IW SG+ + +YRG +YE +PS +WN K + V +
Sbjct: 275 LNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYE--LPSGKWN-KQRREETPPEAVIEN 331
Query: 278 SNATSSLPEKSXXXXXXXXXXXXMTPEEAE------------FDRMLDDFGPRFVEWWGT 325
+ T+++ +KS T E + D +LDD GPRF++W G
Sbjct: 332 HDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGPRFMDWPGD 391
Query: 326 GILPVDADLLPPKVTGYKAPLRLLPAGMRSRITEDELTKLRKLSKALPCHFALGRNRDLQ 385
LPVDADLLP + Y+ P R+LP G+RS + E T LR+L++++P HFALGR+R LQ
Sbjct: 392 NPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQ 451
Query: 386 GLACAILKLWEKSLVAKIAVKRGIQNTNNELMADELKKLTGGALLLRNKYFIVIYRGKDF 445
GLA A+++LWEKS++AKIA+KRG+Q+T +E MA++LKKLTGG +L RNK F+V YRGK+F
Sbjct: 452 GLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNF 511
Query: 446 VPTSVAAVLAERQELTKQVQDAEEKVRCRTVDE-TLSGEDDANG--QAGSLAEFYEAQAR 502
+ VA L E++ + +QD EE+ R R + + AN AG+L E +A +
Sbjct: 512 LSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDATGK 571
Query: 503 WGRDISNKEREKMMKEATEA-KNVRLIKKVELKLASAQAKRLRAEKLLAKVEASLVPAVP 561
WG+++ + + +K+ E ++ L++K+E KLA A+ K L+AE+ LAKVE L PA
Sbjct: 572 WGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQ 631
Query: 562 XXXXXXXXXXXXXMFRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTL 621
MFR +GL MKA+L LG RGVFDG +ENMHLHW++RELVK+I K KT
Sbjct: 632 REDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTF 691
Query: 622 AFVEDTARLLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPISLWPRNLLTKAKALQRSI 681
V+ A LE ESGGILV+ID++ KG+++I YRG++Y+RP L P+NLLTK KAL RSI
Sbjct: 692 DGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSI 751
Query: 682 NMQRHEALSQHIT 694
+QR E L +HI+
Sbjct: 752 ELQRREGLLKHIS 764
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/546 (43%), Positives = 337/546 (61%), Gaps = 25/546 (4%)
Query: 160 AELALGVDEVKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQN 219
AE + E+KRLR V + + ERV V AG+TQA++ IH W EVV+LKF E + N
Sbjct: 240 AERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLN 299
Query: 220 MKLAQQIVERRTRGLIIWSSGSVLWVYRGRNY-----EGPIPSNQWNGKGGDDRLLVTD- 273
MK +++E++T GL+IW SGS + +YRG +Y + I N R +
Sbjct: 300 MKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQTFIKQNNLEANPEIHRSVEARD 359
Query: 274 -VSLDSNATSSLPEKSXXXXXXXXXXXXMTPEEAEFDRMLDDFGPRFVEWWGTGILPVDA 332
V D N ++P++ E E + +LD+ GPRF +W G PVDA
Sbjct: 360 YVQEDGNYPKNVPKEQLS-------------ELCELNDLLDEVGPRFHDWTGCAPFPVDA 406
Query: 333 DLLPPKVTGYKAPLRLLPAGMRSRITEDELTKLRKLSKALPCHFALGRNRDLQGLACAIL 392
DLLP V GY+ P R+LP G++ ++ E+T++R+L++ P HFALGR+R+LQGLA A++
Sbjct: 407 DLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMV 466
Query: 393 KLWEKSLVAKIAVKRGIQNTNNELMADELKKLTGGALLLRNKYFIVIYRGKDFVPTSVAA 452
KLW KS +AKIA+KRG++NT NE MA+ELK+LT G L+ RNK +IV YRG DF+P +VA
Sbjct: 467 KLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAE 526
Query: 453 VLAERQ-ELTKQVQDAEEKVR-CRTVDETLSGEDDANGQ---AGSLAEFYEAQARWGRDI 507
L ERQ E+T+ +Q E++ R + TL+ + + AG+LAE A +RW +
Sbjct: 527 ALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNA 586
Query: 508 SNKEREKMMKEATEAKNVRLIKKVELKLASAQAKRLRAEKLLAKVEASLVPAVPXXXXXX 567
S+ + E++ +E+ K LI+ +EL+L + K RAE+ LAKV+ L P+
Sbjct: 587 SSVDIEELKRESASIKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEI 646
Query: 568 XXXXXXXMFRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDT 627
++R +GL+M +L LG R V+DG IENMHLHW+HRELVK+I + K+L V+
Sbjct: 647 ITEEERLLYRKIGLSMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHI 706
Query: 628 ARLLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPISLWPRNLLTKAKALQRSINMQRHE 687
A LE ESGG+LV++D+ KG+++I YRGKNY+ P L P NLLT+ KA RSI +QR E
Sbjct: 707 AISLEAESGGVLVSVDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRRE 766
Query: 688 ALSQHI 693
AL H+
Sbjct: 767 ALKYHV 772
>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD
LENGTH=720
Length = 720
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/619 (38%), Positives = 346/619 (55%), Gaps = 67/619 (10%)
Query: 82 AIDRVVHRLRKLGSNSHHDEDEPPPHDGF--LRREWVRPDAPMAVDTVLPWENDEELPRV 139
A+ ++V + KL +S +E + F L R + ++ +PWE +EE +
Sbjct: 132 AMKKIVRNVEKLDEDSDSEETQMDDLSEFEYLGRIEEKVESKDRFGGKMPWEREEERFIL 191
Query: 140 RGEDEGGKGLRKKTVKAPSLAELALGVDEVKRLRRVGMLVKERVSVPKAGLTQAVLHKIH 199
R R K P+ AEL L + RLRR +++ V+V KAG+T+ V++KI
Sbjct: 192 R---------RMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIK 242
Query: 200 HHWRNCEVVRLKFHELLAQNMKLAQQIVERRTRGLIIWSSGSVLWVYRGRNYEGPIPSNQ 259
W+ E+ ++F L +NM+ AQ+I+E +T GL++ S L VYRG GP
Sbjct: 243 SMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG----GP----S 294
Query: 260 WNGKGGDDRLLVTDVSLDSNATSSLPEKSXXXXXXXXXXXXMTPEEAEFDRMLDDFGPRF 319
++ +G D+ +SSL E+ E DR+LD GPR+
Sbjct: 295 YSSEGQDE------------ISSSLYER-------------------EADRLLDGLGPRY 323
Query: 320 VEWWGTGILPVDADLLPPKVTGYKAPLRLLPAGMRSRITEDELTKLRKLSKALPCHFALG 379
++WW PVDADLLP V GY P R P R+++T++ELT LR +++ LP HF LG
Sbjct: 324 MDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLG 383
Query: 380 RNRDLQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMADELKKLTGGALLLRNKYFIVI 439
RN LQGLA AI+KLWEK ++AKIA+K G NTNNE MADEL+ LTGG L+LRNKY IV+
Sbjct: 384 RNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVL 443
Query: 440 YRGKDFVPTSVAAVLAERQELTKQVQDAEEKVRCRTVD----ETLSGEDDANGQAGSLAE 495
YRGKDF+ VA ++ +R+ L + Q EE R ++ T + ++G+L E
Sbjct: 444 YRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLE 503
Query: 496 FYEAQARWGR-DISNKEREKMMKEATEAKNVRL---IKKVELKLASAQAKRLRAEKLLAK 551
F E Q ++G D N E TEA+ RL +K E KL+ ++K ++ L K
Sbjct: 504 FQELQRKFGEMDPRNLE--------TEAEKARLEKELKSQEHKLSILKSKIEKSNMELFK 555
Query: 552 VEASLVPAVPXXXXXXXXXXXXXMFRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHREL 611
+ + P+ R +GL M + L LG RGVF GV+E +H HW+HRE+
Sbjct: 556 LNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREV 615
Query: 612 VKLITKQKTLAFVEDTARLLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPIS-LWPRNL 670
K+IT QK + V TA+ LE ES G+L++I++L +G +++ YRGKNY+RP S L +NL
Sbjct: 616 AKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNL 675
Query: 671 LTKAKALQRSINMQRHEAL 689
LTK KALQRS+ MQR +L
Sbjct: 676 LTKRKALQRSVVMQRLGSL 694
>AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9223998-9225505 FORWARD LENGTH=444
Length = 444
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 579 VGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYESGGI 638
+GL K Y+ +G RG++ GVI NMHLHW+ + ++++ K T V++ A L +GGI
Sbjct: 188 MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGI 247
Query: 639 LVAIDRLPKGFSLIYYRGKNYRRPIS--LWPRNLLTKAKALQRS 680
++ + +G ++I YRGKNY +P + + PR L + KAL +S
Sbjct: 248 VLDVH---EGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKS 288
>AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9224294-9225505 FORWARD LENGTH=380
Length = 380
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 576 FRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYES 635
+ +GL K Y+ +G RG++ GVI NMHLHW+ + ++++ K T V++ A L +
Sbjct: 121 YLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLT 180
Query: 636 GGILVAIDRLPKGFSLIYYRGKNYRRPIS--LWPRNLLTKAKALQRS 680
GGI++ + +G ++I YRGKNY +P + + PR L + KAL +S
Sbjct: 181 GGIVLDVH---EGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKS 224
>AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr2:12176642-12178031 REVERSE LENGTH=372
Length = 372
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 510 KEREKMMKEATEAKNVRLIKKVELKLASAQAKRLRAEKLLAKVEASLVPAVPXXXXXXXX 569
K+ ++ + + K V ++++ KL A+ K + L + E + V P
Sbjct: 107 KDPRRLTVKGKKKKFVNAEERIKYKLEKAKIKEALLIERLKRYEVAKVQG-PEVRPHEIT 165
Query: 570 XXXXXMFRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTAR 629
+ +G Y+ +G RGVF GVI NMHLHW+ E VK+I V+ A
Sbjct: 166 GEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAE 225
Query: 630 LLEYESGGILVAIDRLPKGFSLIYYRGKNYRRPISLWPRNLLTKAKALQRSINMQRHEAL 689
L SGG+ V I ++I+YRGK Y +P + P + L+K +A ++S Q E++
Sbjct: 226 ELAKLSGGVPVNII---GDDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESV 282
Query: 690 SQHIT 694
I
Sbjct: 283 RHFIA 287
>AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:7621780-7623051 REVERSE LENGTH=343
Length = 343
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 531 VELKLASAQAKRLRAEKLLAKVEASLVPAVPXXXX--XXXXXXXXXMFRSVGLTMKAYLQ 588
V ++ +AKR + E L+ K+ VP P + G K ++
Sbjct: 144 VRIRYKLEKAKR-KEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVL 202
Query: 589 LGTRGVFDGVIENMHLHWRHRELVKLITKQ-----KTLAFVEDTARLLEYESGGILVAID 643
+G RGVF GV+ N+HLHW+ E VK+I K + + E+ ARL S GI+ ID
Sbjct: 203 VGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARL----SKGIV--ID 256
Query: 644 RLPKGFSLIYYRGKNYRRPISLWPRNLLTKAKALQRSINMQRHEALSQHI 693
P +++ YRGKNY RP + P + L+K KAL++ Q E S+ I
Sbjct: 257 VKPNN-TIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFI 305
>AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:10208010-10209899 REVERSE LENGTH=491
Length = 491
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 576 FRSVGLTMKAYLQLGTRGVFDGVIENMHLHWRHRELVKLITKQKTLAFVEDTARLLEYES 635
F+ +G K Y+ +G RGVF GV++NMH+HW+ E V++ +++ A ++ S
Sbjct: 100 FKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLS 159
Query: 636 GGILVAIDRLPKGFSLIYYRGKNYRRPISLWPRNLLTKAKAL 677
GG+++ I + ++I +RG+NYR+P +L P N LTK KAL
Sbjct: 160 GGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKAL 198
>AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr1:8312199-8314740 REVERSE
LENGTH=564
Length = 564
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 176 GMLVKE------RVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLAQQIVER 229
GML+K +V++ + G T +L IH HW+ V +++ + +M +++E
Sbjct: 209 GMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEE 268
Query: 230 RTRGLIIWSSGSVLWVYRGRNY 251
+T G II G V++++RGRNY
Sbjct: 269 KTGGEIIHRVGGVVYLFRGRNY 290
>AT4G31010.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr4:15106708-15108446
FORWARD LENGTH=405
Length = 405
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 12/144 (8%)
Query: 111 LRREWVRPDAPMAVDTVLPWENDEELPRVRGEDEGGKGLRKKTVKAPSL--AELALGVDE 168
L REW AP AV+ + + E P++ +E + +R+K ++ SL AE V+
Sbjct: 116 LDREWTGVCAP-AVNPKVESVDGVEDPKL---EEKRRKVREK-IQGASLTEAERKFLVEL 170
Query: 169 VKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLAQQIVE 228
+R + K +V++ + GLT +L+ +++HW++ E VR+K + +MK +E
Sbjct: 171 CQRNK-----TKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLE 225
Query: 229 RRTRGLIIWSSGSVLWVYRGRNYE 252
+T G ++ L +YRGRNY+
Sbjct: 226 DKTFGQVVSKHSGTLVLYRGRNYD 249
>AT5G54890.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr5:22293346-22294909
FORWARD LENGTH=358
Length = 358
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%)
Query: 182 RVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLAQQIVERRTRGLIIWSSGS 241
++++ K G+T ++ IH+HW+ E VR+K + +M +E ++ G I++ + +
Sbjct: 163 QINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNIN 222
Query: 242 VLWVYRGRNYE 252
+L +YRGRNY+
Sbjct: 223 ILVLYRGRNYD 233
>AT4G31010.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM)
domain-containing protein | chr4:15106708-15108038
FORWARD LENGTH=341
Length = 341
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 12/144 (8%)
Query: 111 LRREWVRPDAPMAVDTVLPWENDEELPRVRGEDEGGKGLRKKTVKAPSL--AELALGVDE 168
L REW AP AV+ + + E P++ +E + +R+K ++ SL AE V+
Sbjct: 116 LDREWTGVCAP-AVNPKVESVDGVEDPKL---EEKRRKVREK-IQGASLTEAERKFLVEL 170
Query: 169 VKRLRRVGMLVKERVSVPKAGLTQAVLHKIHHHWRNCEVVRLKFHELLAQNMKLAQQIVE 228
+R + K +V++ + GLT +L+ +++HW++ E VR+K + +MK +E
Sbjct: 171 CQRNK-----TKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLE 225
Query: 229 RRTRGLIIWSSGSVLWVYRGRNYE 252
+T G ++ L +YRGRNY+
Sbjct: 226 DKTFGQVVSKHSGTLVLYRGRNYD 249