Miyakogusa Predicted Gene
- Lj4g3v3099280.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3099280.1 Non Chatacterized Hit- tr|G7KN45|G7KN45_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,67.35,4e-19,
,CUFF.52269.1
(166 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 100 8e-22
AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 95 2e-20
AT1G13390.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 80 6e-16
AT1G13390.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 80 6e-16
AT1G68490.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 79 1e-15
>AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:540024-540955 REVERSE
LENGTH=162
Length = 162
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 84/170 (49%), Gaps = 28/170 (16%)
Query: 11 QNNTLTSCEEMR---------MESVVCPKPRRMSQLNHSSMNNQIRPSRRPMGYQ--SEI 59
Q N S EE R ++SVVCPKPRR NN IRP R ++
Sbjct: 7 QQNAFLSREESRGFVPIYSHPVDSVVCPKPRRA--------NNVIRPFRLHFSLSGADDV 58
Query: 60 EDSGVGAELLDIILPKDSCYPESDRSGESPFFCGSPPSRASNPVIQDEQFGNGNXXXXXX 119
DS G +LLDI K ES S PFF GSPPSRA+NP+ QD +FG+
Sbjct: 59 CDSKAGEDLLDIFRRK-----ESVSSRSPPFFLGSPPSRAANPLAQDARFGDEKLNTVSP 113
Query: 120 XXXXXXXXXXR---GCVPMKFGNTPAVVRIEGFDCLTRDRRSNRSISAVA 166
R GC MKFG PA VR+EGFDCL RD R N SI A+A
Sbjct: 114 SLSPLLPSASRVKSGCGRMKFGVKPATVRVEGFDCLNRD-RPNSSIPAMA 162
>AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast
hits to 133 proteins in 18 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:5261171-5262668 REVERSE LENGTH=244
Length = 244
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 89/177 (50%), Gaps = 26/177 (14%)
Query: 11 QNNTLTSCEEM----RMESVVCPKPRRMSQLNHSSMNNQIRPSRRPMG-YQSEIEDSGVG 65
Q N S EEM R + VVCPKPRR+ L NN IRP R M +++ DS G
Sbjct: 73 QQNAFMSREEMMGFDRKDLVVCPKPRRVGLL----ANNVIRPLRLHMSQAAADLCDSKAG 128
Query: 66 AELLDIILPK-DSCYPESDRSGESPFFCGSPPSRASNPVIQDEQFGNG------------ 112
AELL+II K D+ S P+F GSPPSRA+NP+ QD +F +
Sbjct: 129 AELLEIIRRKEDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNSPFL 188
Query: 113 ---NXXXXXXXXXXXXXXXXRGCVPMKFGNTPAVVRIEGFDCLTRDRRSNRSISAVA 166
+ RGCV MKFG VR+EGFDCL RDR+ N SI A+A
Sbjct: 189 QPYSATGFPSPSSSSSSSSSRGCVRMKFGLNSPAVRVEGFDCLNRDRQ-NSSIPAMA 244
>AT1G13390.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:4592829-4593549 REVERSE
LENGTH=176
Length = 176
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 88/183 (48%), Gaps = 36/183 (19%)
Query: 8 GYQQNNTLTSCEEMRM--------ESVVCPKPRRMSQLNHSSMNNQIRPSRRPMGYQSEI 59
G QQN + EEMR ++V+CPKPRR+ LNH S R R + +Q E+
Sbjct: 6 GIQQN----AFEEMRRNAAVSDRRDAVICPKPRRVGALNHHSS----RSLRWQLNHQMEL 57
Query: 60 EDSGVGAELLDIILPKDSCYP---ESDRSGESP--FFCGSPPSRASNPVIQDEQFGNGNX 114
+S G+E+LD IL K + R+ +P FF GSPPSR SNP+ +D F
Sbjct: 58 CESNSGSEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELL 117
Query: 115 XXXXXXXXXXXXXXXR--------GCV--PMKFGNTPAVVRIEGFDCLTRDRR-SNRSIS 163
+ CV FGN P VVR+ GFDC DRR SNRSIS
Sbjct: 118 MVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNP-VVRVVGFDC---DRRSSNRSIS 173
Query: 164 AVA 166
+A
Sbjct: 174 TLA 176
>AT1G13390.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins
in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:4592829-4593549 REVERSE
LENGTH=176
Length = 176
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 88/183 (48%), Gaps = 36/183 (19%)
Query: 8 GYQQNNTLTSCEEMRM--------ESVVCPKPRRMSQLNHSSMNNQIRPSRRPMGYQSEI 59
G QQN + EEMR ++V+CPKPRR+ LNH S R R + +Q E+
Sbjct: 6 GIQQN----AFEEMRRNAAVSDRRDAVICPKPRRVGALNHHSS----RSLRWQLNHQMEL 57
Query: 60 EDSGVGAELLDIILPKDSCYP---ESDRSGESP--FFCGSPPSRASNPVIQDEQFGNGNX 114
+S G+E+LD IL K + R+ +P FF GSPPSR SNP+ +D F
Sbjct: 58 CESNSGSEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREELL 117
Query: 115 XXXXXXXXXXXXXXXR--------GCV--PMKFGNTPAVVRIEGFDCLTRDRR-SNRSIS 163
+ CV FGN P VVR+ GFDC DRR SNRSIS
Sbjct: 118 MVASPSPSTPRATKPQPPSSPRNGSCVMAATSFGNNP-VVRVVGFDC---DRRSSNRSIS 173
Query: 164 AVA 166
+A
Sbjct: 174 TLA 176
>AT1G68490.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast
hits to 125 proteins in 18 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:25693926-25694946 FORWARD LENGTH=183
Length = 183
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 87/183 (47%), Gaps = 26/183 (14%)
Query: 2 NCYAYYGYQQNNTLTSCEEMRMESVVCPKPRRMSQLNHSSMNNQIRPSRRP---MGYQSE 58
N +A G +++++ S E +VVCPKPRR+ NN PSR +Q E
Sbjct: 9 NAFAAGGDLRSSSV-SVVERDQTTVVCPKPRRIGL-----RNNHHHPSRSLRCYFSHQLE 62
Query: 59 IEDSGVGAELLDIILPKDSCYPESDRS----GESPFFCGSPPSRASNPVIQDEQFGNG-- 112
+ +S ++LDIIL KD E SPF CGSPPSR +NP+ QD +F +
Sbjct: 63 LCESKAETDILDIILTKDGYGAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDEIV 122
Query: 113 --------NXXXXXXXXXXXXXXXXRGCVPM-KFGNTPAVVRIEGFDCLTRDRRSNRSIS 163
GCV FGN+P VR+EGFDCL RD R N SI
Sbjct: 123 SVSSVIPPQLGLPPSSSPSSSSGRKGGCVVRGNFGNSPK-VRVEGFDCLDRDSR-NCSIP 180
Query: 164 AVA 166
A+A
Sbjct: 181 ALA 183