Miyakogusa Predicted Gene

Lj4g3v3098160.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3098160.2 tr|G7L912|G7L912_MEDTR Protein CASP OS=Medicago
truncatula GN=MTR_8g103950 PE=4 SV=1,89.46,0,coiled-coil,NULL;
seg,NULL; CASP_C,CASP, C-terminal; CASP,NULL; CCAAT DISPLACEMENT
PROTEIN-RELATED,N,CUFF.52299.2
         (330 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein...   499   e-142

>AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein
           alternatively spliced product | chr3:6336924-6341596
           FORWARD LENGTH=689
          Length = 689

 Score =  499 bits (1286), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/331 (76%), Positives = 275/331 (83%), Gaps = 4/331 (1%)

Query: 1   MRKELHARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM 60
           M+KEL  RP+ K+VDDLRKKVKILQAVGYNSIEAEDW+ AT+GEEMSKMESLLLDKNRKM
Sbjct: 360 MKKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKM 419

Query: 61  EHELTQLKVKLSEKTSSLEIAEQKAVELTTKVNEQQKLIQKLEDDILKGYSSNSKDHKG- 119
           EHE+TQLKV+LSEK S LE AE K  ELT KVNEQQ+LIQKLEDDILKGY S  K+ KG 
Sbjct: 420 EHEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYGS--KERKGA 477

Query: 120 FPDDWDLSEAGRSEVSENMDQRHA-LDQDQSSMLKVICNQRDXXXXXXXXXXXXXXQLKE 178
             D+W+ SEAG +E SE MDQ+H   +QDQSSMLKVIC+QRD              +LKE
Sbjct: 478 LFDEWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKE 537

Query: 179 KIRVLTGELEKTKADNVKLYGKIRYVQDYNTAKVVSRGSKKYAEDLESGFTSDVESKYKK 238
           KI  LT ELEKTKADNVKLYGKIRYVQDYN  KVVSRGSKKY EDLESGF+SDVESKYKK
Sbjct: 538 KIGFLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYVEDLESGFSSDVESKYKK 597

Query: 239 IYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHMLVF 298
           IYEDDINPFAAFSKKER+QR K+LG RDRITLSSGRFLLGNKYARTFAFFYTIGLH+LVF
Sbjct: 598 IYEDDINPFAAFSKKEREQRIKDLGIRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLVF 657

Query: 299 TCLYRMSALSYLSHGPEEPLIGARKVDLPRG 329
           TCLYRMSA SYLSHG EE L+     +LP G
Sbjct: 658 TCLYRMSAYSYLSHGAEETLMTEATTNLPHG 688