Miyakogusa Predicted Gene

Lj4g3v3098160.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3098160.1 Non Chatacterized Hit- tr|I0Z2P8|I0Z2P8_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,32.11,8e-17,CASP,NULL; CCAAT DISPLACEMENT PROTEIN-RELATED,NULL;
coiled-coil,NULL; CASP_C,CASP, C-terminal; seg,N,CUFF.52299.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein...   303   1e-82

>AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein
           alternatively spliced product | chr3:6336924-6341596
           FORWARD LENGTH=689
          Length = 689

 Score =  303 bits (775), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/223 (72%), Positives = 178/223 (79%), Gaps = 4/223 (1%)

Query: 1   MRKELHARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM 60
           M+KEL  RP+ K+VDDLRKKVKILQAVGYNSIEAEDW+ AT+GEEMSKMESLLLDKNRKM
Sbjct: 360 MKKELQERPSAKLVDDLRKKVKILQAVGYNSIEAEDWDAATTGEEMSKMESLLLDKNRKM 419

Query: 61  EHELTQLKVKLSEKTSSLEIAEQKAVELTTKVNEQQKLIQKLEDDILKGYSSNSKDHKG- 119
           EHE+TQLKV+LSEK S LE AE K  ELT KVNEQQ+LIQKLEDDILKGY   SK+ KG 
Sbjct: 420 EHEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDDILKGYG--SKERKGA 477

Query: 120 FPDDWDLSEAGRSEVSENMDQRHAL-DQDQSSMLKVICNQRDXXXXXXXXXXXXXXQLKE 178
             D+W+ SEAG +E SE MDQ+H   +QDQSSMLKVIC+QRD              +LKE
Sbjct: 478 LFDEWEFSEAGVAEQSEPMDQKHVPSEQDQSSMLKVICSQRDRFRARLRETEEEIRRLKE 537

Query: 179 KIRVLTGELEKTKADNVKLYGKIRYVQDYNTAKVVSRGSKKKI 221
           KI  LT ELEKTKADNVKLYGKIRYVQDYN  KVVSRGSKK +
Sbjct: 538 KIGFLTDELEKTKADNVKLYGKIRYVQDYNHDKVVSRGSKKYV 580