Miyakogusa Predicted Gene

Lj4g3v3097120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3097120.1 tr|G7JX53|G7JX53_MEDTR Replication protein
A1-like protein OS=Medicago truncatula GN=MTR_5g053590
PE,30.86,2e-17,seg,NULL; no description,Nucleic acid-binding, OB-fold;
REPLICATION FACTOR A 1, RFA1,NULL; DUF223,Do,gene.g58016.t1.1
         (371 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    71   2e-12
AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    67   2e-11

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 65/109 (59%), Gaps = 4/109 (3%)

Query: 8   IAEVDDSKETWKLGVRITNLWVVEKSSK---VNAMEMIFMDQKGGKITAVVKKFDIDKWK 64
           ++++     T K+ VRI  LW   K  +   +  ++++ +D KG +I A ++   + K++
Sbjct: 8   VSQLHSHLSTCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQ 67

Query: 65  SMLKEDNTYIVQNFEVNHNDGQFRTSNHPYKLVFMKGT-IVQARQIPEI 112
             L+E + Y++ NFE++ N G +R S+HPYK+ FM  T I+  +++ E+
Sbjct: 68  EKLEEGDCYMIMNFEISDNGGSYRASSHPYKINFMSMTHIIGMQELKEV 116


>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)

Query: 15  KETWKLGVRITNLWVVEKSSKVNAMEMIFMDQKGGKITAVVKKFDIDKWKSMLKEDNTYI 74
           K +W + V+I + W         + EM+  D+ G KI A +KK  + K +  +K  +  I
Sbjct: 17  KTSWCIQVKILHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQRYVKIGHWTI 76

Query: 75  VQNFEVNHNDGQFRTSNHPYKLVFMKGTIVQARQIPEIPHNIY-HFTPFDDILAGGASTE 133
           ++ F V    G +R++ HPY++     T  +    P I   I+     F+D+L+G     
Sbjct: 77  IEEFSVTKASGLYRSTTHPYRINIQSST--RFSNSPTISDEIWLDLVNFNDVLSGTLDQN 134

Query: 134 VLVDVIGELSDVVQIQ 149
            LV+VIG+L +V +IQ
Sbjct: 135 KLVNVIGQLVNVGEIQ 150