Miyakogusa Predicted Gene

Lj4g3v3096060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3096060.1 tr|G7L912|G7L912_MEDTR Protein CASP OS=Medicago
truncatula GN=MTR_8g103950 PE=4 SV=1,88.29,0,coiled-coil,NULL;
seg,NULL; CASP,NULL; CCAAT DISPLACEMENT
PROTEIN-RELATED,NULL,CUFF.52253.1
         (350 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein...   494   e-140

>AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein
           alternatively spliced product | chr3:6336924-6341596
           FORWARD LENGTH=689
          Length = 689

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/353 (72%), Positives = 289/353 (81%), Gaps = 8/353 (2%)

Query: 1   MEAPQGGSERDKPTSPI--------ITVVSAFWKDFDLEKEKSILDEQGLRIAENQENSQ 52
           ME  Q GSERDK   P         I VV+ FWK+FDLEKEKS+LDEQGLRIAENQENSQ
Sbjct: 1   MEVSQDGSERDKTPPPSSSSSSSSPIPVVTNFWKEFDLEKEKSLLDEQGLRIAENQENSQ 60

Query: 53  KNRRKLAESTRNFKKASPEDKLNLFNTLLRGYQEEVDNLTKRAKFGENAFLNIYQKLYEA 112
           KNRRKLAESTR+FKKASPE+KL++FN+LL+GYQEEVDN+TKRAKFGENAFLNIYQKLYEA
Sbjct: 61  KNRRKLAESTRDFKKASPENKLSMFNSLLKGYQEEVDNITKRAKFGENAFLNIYQKLYEA 120

Query: 113 PDPYPALASIAEQDLKLSELESENRKMKVELEEFRTEATHLKNQQATIXXXXXXXXXXXX 172
           PDP+PALASIAEQD KLSE+ESENRKMKVELEEFRTEATHLKNQQATI            
Sbjct: 121 PDPFPALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRRLEERNRQLEQ 180

Query: 173 XXXXXXXXXXXXXQRNLAEENQKTLEILKEREQLLQDQLQSAKESVSTMQKLHELAQNKL 232
                        QRNLAEENQKT+E+LK+REQ LQDQL+ AK+SVSTMQKLHELAQN+L
Sbjct: 181 QMEEKIKEVVEIKQRNLAEENQKTMELLKDREQALQDQLRQAKDSVSTMQKLHELAQNQL 240

Query: 233 FELRAQSDEERAAKQAEVNLLMDEVERAQTMLLGLEREKGVLRSQLQTTNQDGEIKKSDN 292
           FELRAQSDEE A KQ+EV+LLMDEVERAQT LL LEREKG LRSQLQT N+D + KKSDN
Sbjct: 241 FELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANEDTDNKKSDN 300

Query: 293 SDSTVALENSLIAKDRQISELNMELHNIETTLSNEREEHMKDVKKFTALLNEK 345
            DS   LENSL AK++ ISELNME+HN+ET L+NERE H+ ++KK  +LLN+K
Sbjct: 301 IDSNSMLENSLTAKEKIISELNMEIHNVETALANERESHVAEIKKLNSLLNKK 353