Miyakogusa Predicted Gene

Lj4g3v3095000.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3095000.3 Non Chatacterized Hit- tr|J3L1T2|J3L1T2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G3,45.16,7e-19,Exo_endo_phos,
Endonuclease/exonuclease/phosphatase; CARBON CATABOLITE REPRESSOR
PROTEIN 4-RELATED,NU,CUFF.52254.3
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18500.3 | Symbols:  | DNAse I-like superfamily protein | chr...   175   2e-44
AT3G18500.2 | Symbols:  | DNAse I-like superfamily protein | chr...   175   2e-44
AT5G11350.1 | Symbols:  | DNAse I-like superfamily protein | chr...   136   9e-33
AT3G18500.1 | Symbols:  | DNAse I-like superfamily protein | chr...   135   1e-32
AT1G73875.1 | Symbols:  | DNAse I-like superfamily protein | chr...   133   7e-32
AT3G58580.1 | Symbols:  | DNAse I-like superfamily protein | chr...    72   2e-13
AT3G58560.1 | Symbols:  | DNAse I-like superfamily protein | chr...    67   6e-12
AT1G31500.1 | Symbols:  | DNAse I-like superfamily protein | chr...    66   2e-11
AT1G31500.3 | Symbols:  | DNAse I-like superfamily protein | chr...    66   2e-11
AT1G31500.2 | Symbols:  | DNAse I-like superfamily protein | chr...    65   2e-11
AT1G31500.4 | Symbols:  | DNAse I-like superfamily protein | chr...    65   3e-11

>AT3G18500.3 | Symbols:  | DNAse I-like superfamily protein |
           chr3:6352544-6355297 FORWARD LENGTH=449
          Length = 449

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 105/151 (69%), Gaps = 5/151 (3%)

Query: 46  RRGHP-----PQFQRHWVEALDHQSLAFSERFTVASYNILADRNAFHHRDLYLNVPYPFI 100
           RR HP      Q  R W+++         ERFTV SYNIL D N+ +HR+LY NV  P++
Sbjct: 78  RRQHPDQIPSSQIARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYL 137

Query: 101 KWDRRKTVICHELFGWNPDIICLQEVDKYLELSNILVKAGYTGYYKRRTGDSVDGCAMFW 160
           KW  RK +IC EL   NPDII +QEVDKY +L +++ KAGY G YKRRTGD+VDGCAMFW
Sbjct: 138 KWGYRKRLICEELIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFW 197

Query: 161 KADKFRLLDGESIQFKDIGLRDNVAQLLVFE 191
           KAD+F +L+ E+I+F   G+RDNVAQL V E
Sbjct: 198 KADRFGVLERENIEFSQFGMRDNVAQLAVLE 228


>AT3G18500.2 | Symbols:  | DNAse I-like superfamily protein |
           chr3:6352544-6355297 FORWARD LENGTH=448
          Length = 448

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 105/151 (69%), Gaps = 5/151 (3%)

Query: 46  RRGHP-----PQFQRHWVEALDHQSLAFSERFTVASYNILADRNAFHHRDLYLNVPYPFI 100
           RR HP      Q  R W+++         ERFTV SYNIL D N+ +HR+LY NV  P++
Sbjct: 78  RRQHPDQIPSSQIARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYL 137

Query: 101 KWDRRKTVICHELFGWNPDIICLQEVDKYLELSNILVKAGYTGYYKRRTGDSVDGCAMFW 160
           KW  RK +IC EL   NPDII +QEVDKY +L +++ KAGY G YKRRTGD+VDGCAMFW
Sbjct: 138 KWGYRKRLICEELIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFW 197

Query: 161 KADKFRLLDGESIQFKDIGLRDNVAQLLVFE 191
           KAD+F +L+ E+I+F   G+RDNVAQL V E
Sbjct: 198 KADRFGVLERENIEFSQFGMRDNVAQLAVLE 228


>AT5G11350.1 | Symbols:  | DNAse I-like superfamily protein |
           chr5:3621583-3625412 FORWARD LENGTH=754
          Length = 754

 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 3/155 (1%)

Query: 39  QQPHFHRRRGHPPQFQRHWVEALDHQSLAFSERFTVASYNILADRNAFHH-RDLYLNVPY 97
           QQ    R R  P  + R W  A    S   SE+F V SYNILAD  A  H R LY ++P 
Sbjct: 152 QQSFRQRPRSKPSDY-REWEYAKTPPSPG-SEKFVVLSYNILADYLANDHWRSLYFHIPR 209

Query: 98  PFIKWDRRKTVICHELFGWNPDIICLQEVDKYLELSNILVKAGYTGYYKRRTGDSVDGCA 157
             + W  RK+ +  EL  W+ DI+CLQEVDK+ +L   +   GY+  +K RTG++VDGCA
Sbjct: 210 NMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRTGNAVDGCA 269

Query: 158 MFWKADKFRLLDGESIQFKDIGLRDNVAQLLVFEA 192
           +FW++++F+L+  ESIQF  +GLRDNVAQ+ V E 
Sbjct: 270 IFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLET 304


>AT3G18500.1 | Symbols:  | DNAse I-like superfamily protein |
           chr3:6352544-6355297 FORWARD LENGTH=426
          Length = 426

 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 88/151 (58%), Gaps = 27/151 (17%)

Query: 46  RRGHP-----PQFQRHWVEALDHQSLAFSERFTVASYNILADRNAFHHRDLYLNVPYPFI 100
           RR HP      Q  R W+++         ERFTV SYNIL D N+ +HR+LY NV  P++
Sbjct: 78  RRQHPDQIPSSQIARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYL 137

Query: 101 KWDRRKTVICHELFGWNPDIICLQEVDKYLELSNILVKAGYTGYYKRRTGDSVDGCAMFW 160
           KW  RK +IC EL   NPDII +Q                      RRTGD+VDGCAMFW
Sbjct: 138 KWGYRKRLICEELIRLNPDIISMQ----------------------RRTGDNVDGCAMFW 175

Query: 161 KADKFRLLDGESIQFKDIGLRDNVAQLLVFE 191
           KAD+F +L+ E+I+F   G+RDNVAQL V E
Sbjct: 176 KADRFGVLERENIEFSQFGMRDNVAQLAVLE 206


>AT1G73875.1 | Symbols:  | DNAse I-like superfamily protein |
           chr1:27781112-27784571 FORWARD LENGTH=454
          Length = 454

 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 94/141 (66%), Gaps = 3/141 (2%)

Query: 54  QRHWV-EALDHQSLAFSERFTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHE 112
           +R WV  A + ++LA  ++  + SYN+L   NA +H DLY NVP   ++W RRK +IC E
Sbjct: 83  EREWVFSANNFENLA--DKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKE 140

Query: 113 LFGWNPDIICLQEVDKYLELSNILVKAGYTGYYKRRTGDSVDGCAMFWKADKFRLLDGES 172
           +  +N  I+CLQEVD++ +L  +L   G+ G +K RTG++ DGCA+FWK + F LLD + 
Sbjct: 141 ISRYNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQH 200

Query: 173 IQFKDIGLRDNVAQLLVFEAD 193
           I+F   G+R+NVAQL V E +
Sbjct: 201 IEFDKFGMRNNVAQLCVLEMN 221


>AT3G58580.1 | Symbols:  | DNAse I-like superfamily protein |
           chr3:21660866-21663697 REVERSE LENGTH=603
          Length = 603

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 32/151 (21%)

Query: 72  FTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFGWNPDIICLQEV--DKY 129
           FTV SYNIL+D +A    DLY   P   + W  R+  +  E+ G+  D++CLQEV  D +
Sbjct: 251 FTVLSYNILSDTSA--SSDLYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQEVQSDHF 308

Query: 130 LEL-SNILVKAGYTGYYKRRTGD-------SVDGCAMFWKADKFRLLDGESIQFKDIG-- 179
            E+ +  L K GY   YKR+T +       ++DGCA F++ D+F  +    ++F      
Sbjct: 309 HEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEFNKAAQS 368

Query: 180 ------------------LRDNVAQLLVFEA 192
                             ++DN+A ++V EA
Sbjct: 369 LTDALIPQAQKRTALNRLVKDNIALIVVLEA 399


>AT3G58560.1 | Symbols:  | DNAse I-like superfamily protein |
           chr3:21650880-21653896 REVERSE LENGTH=602
          Length = 602

 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 32/151 (21%)

Query: 72  FTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFGWNPDIICLQEV--DKY 129
           FTV SYNIL+D   +   D+Y   P   + W  R+  +  E+  +  DI+CLQEV  D +
Sbjct: 248 FTVLSYNILSD--TYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHF 305

Query: 130 LE-LSNILVKAGYTGYYKRRTGD-------SVDGCAMFWKADKFRLLDGESIQFKDIG-- 179
            E     L K GY G +KR+T +       ++DGCA F++ D+F  +    ++F      
Sbjct: 306 EEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQS 365

Query: 180 ------------------LRDNVAQLLVFEA 192
                             ++DNVA ++V EA
Sbjct: 366 LTEAIIPVSQKKNALNRLVKDNVALIVVLEA 396


>AT1G31500.1 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11273821-11276534 REVERSE LENGTH=388
          Length = 388

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 58  VEALDHQSLAFSE--RFTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFG 115
           VE +D  S   S+  RF + SYNILA    +    L  + P   +KW  R   I   L  
Sbjct: 47  VEGVDIGSRNKSDGIRFRLVSYNILA--QVYVKSALLPHSPPACLKWKARSHAILSVLKN 104

Query: 116 WNPDIICLQEVDKYLEL-SNILVKAGYTGYYKRRTGD-SVDGCAMFWKADKFRLLDGESI 173
              D  CLQEVD+Y     N +   GY+G Y +RTG    DGCA+F+K     L+  E I
Sbjct: 105 LQADFFCLQEVDEYDSFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYKPSCAELVTKERI 164

Query: 174 QFKDI 178
           ++ D+
Sbjct: 165 EYNDL 169


>AT1G31500.3 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11274230-11276534 REVERSE LENGTH=283
          Length = 283

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 58  VEALDHQSLAFSE--RFTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFG 115
           VE +D  S   S+  RF + SYNILA    +    L  + P   +KW  R   I   L  
Sbjct: 42  VEGVDIGSRNKSDGIRFRLVSYNILA--QVYVKSALLPHSPPACLKWKARSHAILSVLKN 99

Query: 116 WNPDIICLQEVDKYLEL-SNILVKAGYTGYYKRRTGD-SVDGCAMFWKADKFRLLDGESI 173
              D  CLQEVD+Y     N +   GY+G Y +RTG    DGCA+F+K     L+  E I
Sbjct: 100 LQADFFCLQEVDEYDSFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYKPSCAELVTKERI 159

Query: 174 QFKDI 178
           ++ D+
Sbjct: 160 EYNDL 164


>AT1G31500.2 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11273821-11276147 REVERSE LENGTH=358
          Length = 358

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 58  VEALDHQSLAFSE--RFTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFG 115
           VE +D  S   S+  RF + SYNILA    +    L  + P   +KW  R   I   L  
Sbjct: 17  VEGVDIGSRNKSDGIRFRLVSYNILA--QVYVKSALLPHSPPACLKWKARSHAILSVLKN 74

Query: 116 WNPDIICLQEVDKYLEL-SNILVKAGYTGYYKRRTGD-SVDGCAMFWKADKFRLLDGESI 173
              D  CLQEVD+Y     N +   GY+G Y +RTG    DGCA+F+K     L+  E I
Sbjct: 75  LQADFFCLQEVDEYDSFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYKPSCAELVTKERI 134

Query: 174 QFKDI 178
           ++ D+
Sbjct: 135 EYNDL 139


>AT1G31500.4 | Symbols:  | DNAse I-like superfamily protein |
           chr1:11273821-11276534 REVERSE LENGTH=417
          Length = 417

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 71  RFTVASYNILADRNAFHHRDLYLNVPYPFIKWDRRKTVICHELFGWNPDIICLQEVDKYL 130
           RF + SYNILA    +    L  + P   +KW  R   I   L     D  CLQEVD+Y 
Sbjct: 91  RFRLVSYNILA--QVYVKSALLPHSPPACLKWKARSHAILSVLKNLQADFFCLQEVDEYD 148

Query: 131 EL-SNILVKAGYTGYYKRRTGD-SVDGCAMFWKADKFRLLDGESIQFKDI 178
               N +   GY+G Y +RTG    DGCA+F+K     L+  E I++ D+
Sbjct: 149 SFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYKPSCAELVTKERIEYNDL 198