Miyakogusa Predicted Gene

Lj4g3v3081720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3081720.1 Non Chatacterized Hit- tr|I1L4H8|I1L4H8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,45.45,9e-17,seg,NULL,gene.g57988.t1.1
         (282 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29300.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    51   1e-06

>AT3G29300.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 12 plant structures; EXPRESSED
           DURING: 6 growth stages; Has 451 Blast hits to 349
           proteins in 91 species: Archae - 0; Bacteria - 85;
           Metazoa - 81; Fungi - 88; Plants - 18; Viruses - 1;
           Other Eukaryotes - 178 (source: NCBI BLink). |
           chr3:11247011-11247652 FORWARD LENGTH=213
          Length = 213

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 182 LVYISNPIYESQGSGE-NTPFMTPETSPSRLXXXXXXXXXXXXXXXXXY----TPPLSPM 236
            +YISNP+Y +  + +  TPF TPE+SPSRL                      TP L+PM
Sbjct: 120 FIYISNPMYSNDATSKPTTPFETPESSPSRLETGESSSSSSGEEDNDHIIEVSTPTLTPM 179

Query: 237 KKLPAEASCSVSLRDSRSLGTSGSDFHSNKCLSSLFSASPCTSPAW 282
           K LP E +CSVSL++  +  +  +            S SP TSP+W
Sbjct: 180 KDLP-EKACSVSLKNVETSASESN-----------SSGSPYTSPSW 213