Miyakogusa Predicted Gene

Lj4g3v3071600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3071600.1 Non Chatacterized Hit- tr|G7L895|G7L895_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,90.77,0,seg,NULL; DUF502,Protein of unknown function DUF502;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.52232.1
         (269 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20120.1 | Symbols: COV1 | Protein of unknown function (DUF50...   394   e-110
AT2G20130.1 | Symbols: LCV1 | like COV 1 | chr2:8690614-8692234 ...   391   e-109
AT2G18460.1 | Symbols: LCV3 | like COV 3 | chr2:8001320-8002854 ...   372   e-104
AT1G43130.1 | Symbols: LCV2 | like COV 2 | chr1:16228661-1623115...   323   9e-89

>AT2G20120.1 | Symbols: COV1 | Protein of unknown function (DUF502)
           | chr2:8687568-8689321 REVERSE LENGTH=268
          Length = 268

 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/262 (76%), Positives = 211/262 (80%), Gaps = 10/262 (3%)

Query: 1   MGDEIXXXXXXXAVMANRDRDRELLIPVANXXXX-----XXXXXXXXXXXXMHHAGRETF 55
           MGDE         VMANR+RDRELLIPVA+                      H +  ET 
Sbjct: 1   MGDE-----KPVIVMANRERDRELLIPVADSGDKDDGSSSKPSSSSSASSSSHQSSHETL 55

Query: 56  YKVVRSWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFITSI 115
              +R WASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGIN+FG GF+TSI
Sbjct: 56  SLFIRGWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSI 115

Query: 116 TFIFLVGVFMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAI 175
            FIFLVGVFMSSWLGASVL LGEWFIKRMP VRHIYNASKQIS AISPDQN+QAFKEVAI
Sbjct: 116 AFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAI 175

Query: 176 IRHPRVGEYAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVR 235
           IRHPRVGEYAFGFITS+VVLQ Y  +EELCCVYVPTNHLYIGD+ LVN  DVIRPNLSVR
Sbjct: 176 IRHPRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVR 235

Query: 236 EGIEIVVSGGMSMPQILSTLDS 257
           EGIEIVVSGGMSMPQILST+D 
Sbjct: 236 EGIEIVVSGGMSMPQILSTVDK 257


>AT2G20130.1 | Symbols: LCV1 | like COV 1 | chr2:8690614-8692234
           REVERSE LENGTH=256
          Length = 256

 Score =  391 bits (1004), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/247 (79%), Positives = 205/247 (82%), Gaps = 4/247 (1%)

Query: 15  MANRDRDRELLIPVANXXXX----XXXXXXXXXXXXMHHAGRETFYKVVRSWASKKFMTG 70
           MANR+RDRELLIPVA+                     H +G ET    +R WASKKFMTG
Sbjct: 1   MANRERDRELLIPVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTG 60

Query: 71  CVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFITSITFIFLVGVFMSSWLG 130
           CVILLPIA+TFY TWWFIHFVDGFFSPIYA LGINIFG GF+TSI FIFLVGVFMSSWLG
Sbjct: 61  CVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSWLG 120

Query: 131 ASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGEYAFGFIT 190
           ASVL LGEWFIKRMP VRHIYNASKQIS AISPDQN+QAFKEVAIIRHPRVGEYAFGFIT
Sbjct: 121 ASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFIT 180

Query: 191 SSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVSGGMSMPQ 250
           S+VVLQ Y  +EELCCVYVPTNHLYIGDI LVN  DVIRPNLSVREGIEIVVSGGMSMPQ
Sbjct: 181 STVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQ 240

Query: 251 ILSTLDS 257
           ILSTLD 
Sbjct: 241 ILSTLDK 247


>AT2G18460.1 | Symbols: LCV3 | like COV 3 | chr2:8001320-8002854
           FORWARD LENGTH=274
          Length = 274

 Score =  372 bits (956), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/248 (72%), Positives = 207/248 (83%), Gaps = 4/248 (1%)

Query: 15  MANRDRDRELLIPV----ANXXXXXXXXXXXXXXXXMHHAGRETFYKVVRSWASKKFMTG 70
           M  R+RD E LIP+    A+                +H AG+E  YKV+RSWASKKFMTG
Sbjct: 1   METRERDLERLIPMHKSGASPRDVVLSVPPSPLASPIHVAGKEAIYKVIRSWASKKFMTG 60

Query: 71  CVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFITSITFIFLVGVFMSSWLG 130
           CVILLPIA+TFY TWWFIHFVDGFFSPIY  LGIN+FGLGF+TSITFIF+VGVFMSSWLG
Sbjct: 61  CVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFGLGFVTSITFIFMVGVFMSSWLG 120

Query: 131 ASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQAFKEVAIIRHPRVGEYAFGFIT 190
           ASVL +GEWFIK+MPLV +IY+ASKQIS AISPDQ+S AFKEVAIIRHP +GEYAFGFIT
Sbjct: 121 ASVLSIGEWFIKKMPLVSYIYSASKQISGAISPDQSSGAFKEVAIIRHPHMGEYAFGFIT 180

Query: 191 SSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVSGGMSMPQ 250
           S+V+L+  +G EELCCVYVPTNHLY+GDIFL++ KD+IRPNLSVREGIEIV+SGGMS+P 
Sbjct: 181 STVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVISGGMSIPH 240

Query: 251 ILSTLDSR 258
           +L+TLDS 
Sbjct: 241 MLTTLDSE 248


>AT1G43130.1 | Symbols: LCV2 | like COV 2 | chr1:16228661-16231158
           REVERSE LENGTH=261
          Length = 261

 Score =  323 bits (828), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 149/207 (71%), Positives = 179/207 (86%)

Query: 50  AGRETFYKVVRSWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGL 109
           + R+  Y V++SW SKKFMTG V+L P+A+TF ITWWFI FVDGFFSPIY  LG++IFGL
Sbjct: 36  STRKACYGVLQSWVSKKFMTGFVVLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGL 95

Query: 110 GFITSITFIFLVGVFMSSWLGASVLGLGEWFIKRMPLVRHIYNASKQISAAISPDQNSQA 169
           GFITS+ F F VG+F SSWLG++V  LGE FI+RMP V+HIY+ASKQIS AISPDQN+ A
Sbjct: 96  GFITSVLFTFFVGIFASSWLGSTVFWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTA 155

Query: 170 FKEVAIIRHPRVGEYAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIR 229
           FKEVAIIRHPR+GEYAFGFITSSV LQT  G+EELC VYVPTNHLYIGD+FLV+ +++IR
Sbjct: 156 FKEVAIIRHPRIGEYAFGFITSSVTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIR 215

Query: 230 PNLSVREGIEIVVSGGMSMPQILSTLD 256
           PNLS+REGIEI+VS GM+MPQ++S +D
Sbjct: 216 PNLSIREGIEIIVSVGMTMPQVISHVD 242