Miyakogusa Predicted Gene
- Lj4g3v3060360.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3060360.3 tr|I6M418|I6M418_GOSHI Auxin-responsive protein
OS=Gossypium hirsutum GN=Aux3 PE=2 SV=1,58.95,7e-19,AUX_IAA,AUX/IAA
protein; seg,NULL,CUFF.52230.3
(108 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29080.1 | Symbols: PAP2, IAA27 | phytochrome-associated prot... 59 6e-10
AT2G22670.4 | Symbols: IAA8 | indoleacetic acid-induced protein ... 48 2e-06
AT2G22670.2 | Symbols: IAA8 | indoleacetic acid-induced protein ... 48 2e-06
AT2G22670.3 | Symbols: IAA8 | indoleacetic acid-induced protein ... 47 2e-06
AT2G22670.1 | Symbols: IAA8 | indoleacetic acid-induced protein ... 47 2e-06
>AT4G29080.1 | Symbols: PAP2, IAA27 | phytochrome-associated
protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
Length = 305
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 40/61 (65%), Gaps = 10/61 (16%)
Query: 13 GLNLKATELRLGLPGSESPEREGT-----NGFSAPLKGLLSGAKRGFSDAIDGGSGNWVL 67
GLN KATELRLGLPGSESPER + N S P +SGAKR FSDAI+ S WV
Sbjct: 37 GLNFKATELRLGLPGSESPERVDSRFLALNKSSCP----VSGAKRVFSDAIN-DSNKWVF 91
Query: 68 S 68
S
Sbjct: 92 S 92
>AT2G22670.4 | Symbols: IAA8 | indoleacetic acid-induced protein 8 |
chr2:9636877-9638459 FORWARD LENGTH=338
Length = 338
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 23/75 (30%)
Query: 12 AGLNLKATELRLGLPGSESPEREGTNGFSAP-----------------------LKGLLS 48
+ LN KATELRLGLP S+SPERE G +P K ++S
Sbjct: 62 SNLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVS 121
Query: 49 GAKRGFSDAIDGGSG 63
G KRGF+D D SG
Sbjct: 122 GNKRGFADTWDEFSG 136
>AT2G22670.2 | Symbols: IAA8 | indoleacetic acid-induced protein 8 |
chr2:9637136-9638459 FORWARD LENGTH=319
Length = 319
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 23/75 (30%)
Query: 12 AGLNLKATELRLGLPGSESPEREGTNGFSAP-----------------------LKGLLS 48
+ LN KATELRLGLP S+SPERE G +P K ++S
Sbjct: 45 SNLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVS 104
Query: 49 GAKRGFSDAIDGGSG 63
G KRGF+D D SG
Sbjct: 105 GNKRGFADTWDEFSG 119
>AT2G22670.3 | Symbols: IAA8 | indoleacetic acid-induced protein 8 |
chr2:9637136-9638459 FORWARD LENGTH=321
Length = 321
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 23/75 (30%)
Query: 12 AGLNLKATELRLGLPGSESPEREGTNGFSAP-----------------------LKGLLS 48
+ LN KATELRLGLP S+SPERE G +P K ++S
Sbjct: 45 SNLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVS 104
Query: 49 GAKRGFSDAIDGGSG 63
G KRGF+D D SG
Sbjct: 105 GNKRGFADTWDEFSG 119
>AT2G22670.1 | Symbols: IAA8 | indoleacetic acid-induced protein 8 |
chr2:9637136-9638459 FORWARD LENGTH=321
Length = 321
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 23/75 (30%)
Query: 12 AGLNLKATELRLGLPGSESPEREGTNGFSAP-----------------------LKGLLS 48
+ LN KATELRLGLP S+SPERE G +P K ++S
Sbjct: 45 SNLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVS 104
Query: 49 GAKRGFSDAIDGGSG 63
G KRGF+D D SG
Sbjct: 105 GNKRGFADTWDEFSG 119