Miyakogusa Predicted Gene

Lj4g3v3056190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3056190.1 tr|G7L853|G7L853_MEDTR CRS2-associated factor
OS=Medicago truncatula GN=MTR_8g102850 PE=4
SV=1,67.52,0,CRS1_YhbY,RNA-binding, CRM domain; no
description,RNA-binding, CRM domain; CRM,RNA-binding, CRM
doma,CUFF.52195.1
         (736 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (C...   527   e-150
AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (C...   433   e-121
AT5G54890.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain-c...   262   7e-70
AT4G31010.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain-c...   261   2e-69
AT4G31010.2 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain-c...   175   9e-44
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3...    64   3e-10

>AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM)
           domain-containing protein | chr2:8644464-8647090 FORWARD
           LENGTH=701
          Length = 701

 Score =  527 bits (1358), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 245/339 (72%), Positives = 281/339 (82%), Gaps = 5/339 (1%)

Query: 69  NIPKSKPR-----PLTTAPENIKISDDGLSYVVDGAPFEFKYSYTETPKVKPLKMREAPY 123
           N PK+KPR     P   A   +K+S+DGL+YV++GAPFEFKYSYTETPKVKPLK+RE  Y
Sbjct: 114 NRPKNKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLREPAY 173

Query: 124 VPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFVPGSSPRYVR 183
            PFGP TM RPWTGRAPLP S+K  +EFDSF LPP  KKG+KPVQ PGPF PG  PRYV 
Sbjct: 174 APFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLPPVGKKGLKPVQKPGPFRPGVGPRYVY 233

Query: 184 SREEVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIG 243
           S+EE+LGEPLTKEEV +LV S +K+ R L+MGRDG THNML+NIH  WKRRRVCKIKC G
Sbjct: 234 SKEEILGEPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKG 293

Query: 244 VCTVDMDNVCQQLEEKTGGKVIRRMGGILYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRL 303
           VCTVDMDNVC+QLEEK GGKVI R GG+L+LFRGRNYN++TRP FPLMLWKPV PVYPRL
Sbjct: 294 VCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVAPVYPRL 353

Query: 304 IPRVPEGLTPEQAYEMRQKGRTLTPICKLGKNGVYFNLANNVREAFEECELVRINCQGLN 363
           I +VPEGLT ++A  MR+KGR L PICKLGKNGVY +L  NV+EAFE CELVRI+CQG+ 
Sbjct: 354 IQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMK 413

Query: 364 RSDYRRIGAKLRDLVPCTLISFENEHILMWRGLNWKSSL 402
            SD+R+IGAKL+DLVPC L+SFENE IL+WRG  WKSSL
Sbjct: 414 GSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSL 452



 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 17/145 (11%)

Query: 602 MERITLLLEQAVEKGSALVLDNDSLDADNIYQTTVSLAKSAPPEPIFTKHWKVAEQRSDK 661
           +ER+ +L++QAVE G+ALVLD   LDAD ++   V+ +  A P P+F    +  +Q + K
Sbjct: 562 IERVLILMKQAVESGTALVLDAADLDADTVFSKAVAFSSVASPGPVFQHGLR--KQPTVK 619

Query: 662 RQGSXXXXXXXXXXXXXXSGMEIGKWENSSKIPKIGMQKGKREKSSKIPRR--------- 712
           +Q S              S + + +  N+SK   + +  GKRE + +  R          
Sbjct: 620 KQES--QEFGYGDLEAKSSNVVVSR--NASKSSNV-VVFGKREVAERGEREEKEEGSKKK 674

Query: 713 -DNFDEQLLNIVPQGTLGVDELAKL 736
            D F E    ++P GTL VDELAKL
Sbjct: 675 MDEFAEDYREVMPHGTLKVDELAKL 699


>AT1G23400.1 | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM)
           domain-containing protein | chr1:8312199-8314740 REVERSE
           LENGTH=564
          Length = 564

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/372 (56%), Positives = 271/372 (72%), Gaps = 10/372 (2%)

Query: 39  NNAGQTSHPTSKDPRNPTVDQQSHPAFRFSNIPKSKPRPL------TTAPENIKISDDGL 92
           N   +T+H T  +P+ P    QS+PA +  +      +P+      +     I I D G+
Sbjct: 47  NRNQKTNHQTDTNPKKP----QSNPALKLPHHRTRYYKPVKEGVISSDGDRTILIGDSGV 102

Query: 93  SYVVDGAPFEFKYSYTETPKVKPLKMREAPYVPFGPVTMPRPWTGRAPLPPSKKKLKEFD 152
           SY + GAPFEF++SY+ETPKVKP+ +RE  ++PF P TMPRPWTG+APL  SKKK+  FD
Sbjct: 103 SYQLPGAPFEFQFSYSETPKVKPVGIREPAFMPFAPPTMPRPWTGKAPLKKSKKKIPLFD 162

Query: 153 SFVLPPPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSDRIL 212
           SF  PP  K GVK V+ PGP   G  P+   +REEVLGEPL + E   L+K  M  +R +
Sbjct: 163 SFNPPPAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDNRQV 222

Query: 213 HMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGIL 272
           ++GRDGFTHNML+ IH+HWKRRRVCK++C GV TVDM+NVC+ LEEKTGG++I R+GG++
Sbjct: 223 NLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVV 282

Query: 273 YLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKL 332
           YLFRGRNYNY+TRP +PLMLWKP  PVYP+LI  VPEGLT E+A+E R KG++L PICKL
Sbjct: 283 YLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKL 342

Query: 333 GKNGVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLISFENEHILM 392
            KNGVY +L  +VR+AFE   LV+++C GL  SDY++IGAKL++LVPC L+SF++E ILM
Sbjct: 343 SKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILM 402

Query: 393 WRGLNWKSSLAD 404
           WRG  WKS   D
Sbjct: 403 WRGREWKSRFVD 414


>AT5G54890.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM)
           domain-containing protein | chr5:22293346-22294909
           FORWARD LENGTH=358
          Length = 358

 Score =  262 bits (669), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 134/305 (43%), Positives = 188/305 (61%), Gaps = 34/305 (11%)

Query: 95  VVDGAPFEFKYSYTET-PKVKPLKMRE-APYVPFGPVTMPRPWTGRAPLPPSKKKLKEFD 152
           V+   PF+F+YSY+ET P+++P+  RE   + PFGP  + R WTG   L        E D
Sbjct: 73  VISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALASP-----EID 127

Query: 153 SFVLPPPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSD--R 210
                                      ++V  R  VLGE LT++EV +L++    SD  R
Sbjct: 128 Q-------------------------SQWVEERARVLGETLTEDEVTELIERYRHSDCTR 162

Query: 211 ILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGG 270
            +++G+ G THNM+D+IH HWK+    +IKC+GV T+DMDN+C  LEEK+GGK++ R   
Sbjct: 163 QINLGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNIN 222

Query: 271 ILYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPIC 330
           IL L+RGRNY+ K+RP  PLMLWKP PP+YPRL+  V +GL  E+  EMR +G     + 
Sbjct: 223 ILVLYRGRNYDPKSRPIIPLMLWKPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALM 282

Query: 331 KLGKNGVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLISFENEHI 390
           KL +NGVY N+   VRE FE  E+VR++C  +  SD +RIG KL+++VPC  I F++E I
Sbjct: 283 KLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQI 342

Query: 391 LMWRG 395
           ++WRG
Sbjct: 343 ILWRG 347


>AT4G31010.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM)
           domain-containing protein | chr4:15106708-15108446
           FORWARD LENGTH=405
          Length = 405

 Score =  261 bits (666), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/315 (43%), Positives = 192/315 (60%), Gaps = 22/315 (6%)

Query: 88  SDDGLSYVVDGAPFEFKYSYTET-PKVKPLKMREAPYVPFGPVTMPRPWTGRAPLPPSKK 146
           S +G+  V    PF+F++SYTE+   V+P+ +RE  Y PFGP  + R WTG    P    
Sbjct: 72  SLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNP 130

Query: 147 KLKEFDSFVLPPPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSM 206
           K++  D    P   +K  K                   RE++ G  LT+ E   LV+   
Sbjct: 131 KVESVDGVEDPKLEEKRRK------------------VREKIQGASLTEAERKFLVELCQ 172

Query: 207 --KSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKV 264
             K+ R +++GRDG THNML++++ HWK     ++KC+GV T+DM NV   LE+KT G+V
Sbjct: 173 RNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQV 232

Query: 265 IRRMGGILYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGR 324
           + +  G L L+RGRNY+ K RP  PLMLWKP  PVYPRLI    +GL+ ++   MR+KG 
Sbjct: 233 VSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGL 292

Query: 325 TLTPICKLGKNGVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLIS 384
            +  + KL KNG Y +L   VR+AF   ELVRI+C GL R DY++IGAKLRDLVPC L++
Sbjct: 293 AVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVT 352

Query: 385 FENEHILMWRGLNWK 399
           F+ E +++WRG ++K
Sbjct: 353 FDKEQVVIWRGKDYK 367


>AT4G31010.2 | Symbols:  | RNA-binding CRS1 / YhbY (CRM)
           domain-containing protein | chr4:15106708-15108038
           FORWARD LENGTH=341
          Length = 341

 Score =  175 bits (444), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 144/249 (57%), Gaps = 22/249 (8%)

Query: 88  SDDGLSYVVDGAPFEFKYSYTET-PKVKPLKMREAPYVPFGPVTMPRPWTGRAPLPPSKK 146
           S +G+  V    PF+F++SYTE+   V+P+ +RE  Y PFGP  + R WTG    P    
Sbjct: 72  SLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRLDREWTGVCA-PAVNP 130

Query: 147 KLKEFDSFVLPPPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSM 206
           K++  D          GV+         P    +  + RE++ G  LT+ E   LV+   
Sbjct: 131 KVESVD----------GVED--------PKLEEKRRKVREKIQGASLTEAERKFLVELCQ 172

Query: 207 --KSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKV 264
             K+ R +++GRDG THNML++++ HWK     ++KC+GV T+DM NV   LE+KT G+V
Sbjct: 173 RNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQV 232

Query: 265 IRRMGGILYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGR 324
           + +  G L L+RGRNY+ K RP  PLMLWKP  PVYPRLI    +GL+ ++   MR+KG 
Sbjct: 233 VSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGL 292

Query: 325 TLTPICKLG 333
            +  + KLG
Sbjct: 293 AVPALTKLG 301


>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
           chr3:139033-143477 FORWARD LENGTH=1011
          Length = 1011

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 197 EVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQL 256
           E+  L    ++  + L +G+ G T  +++ IH  W+   V KI C  +  ++M      L
Sbjct: 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229

Query: 257 EEKTGGKVIRRMGGILYLFRGRNYNYKTRPHF 288
           E KTGG VI R G  + L+RG NY Y   P+F
Sbjct: 230 ETKTGGLVIWRSGSKILLYRGVNYQY---PYF 258



 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 191 EPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMD 250
           E +T +E   L K  +K    L +GR G     ++N+H HWK R + KI C         
Sbjct: 577 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 636

Query: 251 NVCQQLEEKTGGKVIR----RMGGILYLFRGRNY 280
            V + LE ++GG ++       G  + ++RG+NY
Sbjct: 637 KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNY 670