Miyakogusa Predicted Gene

Lj4g3v3020510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3020510.1 tr|B9P6Y9|B9P6Y9_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_679276
PE=4,53.52,0.000000000003, ,CUFF.52149.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26240.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   241   2e-64

>AT4G26240.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:13287011-13288896 REVERSE LENGTH=198
          Length = 198

 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 143/197 (72%), Gaps = 5/197 (2%)

Query: 1   MKKLARKFRNSKDD----HYSLPV-HDEDSRPLDPQEQEEFVRSLERSQIQQSRVWRRVF 55
           MKKLARK+R ++ D     + LP   D DSRP+D QEQEE+VR LE +  QQS  WR VF
Sbjct: 1   MKKLARKWRRTRRDEDDDKFVLPTSEDVDSRPIDTQEQEEYVRYLEEAHAQQSLQWRSVF 60

Query: 56  AALFFCYILFHLYSMFNQASSPWELRYHAYFMEETYSWMIISADMVAVLACSFAIIGLLD 115
             L  C+  F  YS+F Q  SPWELRYHAYFME+  SWM+ISA+ +A++ACS +I+GL D
Sbjct: 61  VVLLICFGAFLFYSIFQQFMSPWELRYHAYFMEDLKSWMVISAEWIAIMACSLSIVGLRD 120

Query: 116 ESMHHRRWIHYSFFTGVVLAVFWLYYMLRLPKLRWDVIWLPFGPLCASALCLYVDHLLAE 175
           +   HRRW  YS   G  L +FWLYY+LRLPK RWD IWLPFGPLC + +CLYVDHLL E
Sbjct: 121 KKNDHRRWFWYSCVVGSALTIFWLYYLLRLPKFRWDAIWLPFGPLCGAGICLYVDHLLEE 180

Query: 176 SSEDVRKLRGYMYTYKA 192
           SSE+V+KLR YMY YKA
Sbjct: 181 SSEEVKKLRNYMYAYKA 197