Miyakogusa Predicted Gene

Lj4g3v3019460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3019460.1 Non Chatacterized Hit- tr|I3TA70|I3TA70_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.22,0,no
description,NULL; 30S RIBOSOMAL PROTEIN S8,Ribosomal protein S8;
Ribosomal_S8,Ribosomal protein S,CUFF.52148.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29430.1 | Symbols: rps15ae | ribosomal protein S15A E | chr4...   230   2e-61
AT2G19720.1 | Symbols: rps15ab | ribosomal protein S15A B | chr2...   226   3e-60
AT2G39590.1 | Symbols:  | Ribosomal protein S8 family protein | ...   144   2e-35
AT5G59850.1 | Symbols:  | Ribosomal protein S8 family protein | ...   143   3e-35
AT1G07770.2 | Symbols: RPS15A | ribosomal protein S15A | chr1:24...   143   3e-35
AT1G07770.1 | Symbols: RPS15A | ribosomal protein S15A | chr1:24...   143   3e-35
AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr3...   140   2e-34

>AT4G29430.1 | Symbols: rps15ae | ribosomal protein S15A E |
           chr4:14472440-14473383 FORWARD LENGTH=129
          Length = 129

 Score =  230 bits (587), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 124/129 (96%)

Query: 1   MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRI 60
           MGRRILNDALR++VNAERRGKA+VELKPISTV+SSFL+IMK +GY+KNF+VYDPHRVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNV 120
           TV+LQGR+NDCKALTYRQD++A++IE Y  +TLPT QWGYVVI+TPDG+LDHEEAI++NV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+F+
Sbjct: 121 GGQVLGFFY 129


>AT2G19720.1 | Symbols: rps15ab | ribosomal protein S15A B |
           chr2:8510223-8511258 REVERSE LENGTH=129
          Length = 129

 Score =  226 bits (576), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 122/129 (94%)

Query: 1   MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRI 60
           MGRRILNDALR++VNAE+RGKA+VELKP+STV+SSFL+IMK +GY+KNF+V+DPHRVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNV 120
           TV+LQGR+NDCKALTYRQD+KA +I  Y  +TLPT QWGY+VI+TPDG+LDHEEAI++NV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129


>AT2G39590.1 | Symbols:  | Ribosomal protein S8 family protein |
           chr2:16517588-16518265 REVERSE LENGTH=136
          Length = 136

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LND L+SM NAE++GK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 12  VLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVEL 71

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N+C  ++ R DL  ++IE +  K LP+ Q+GY+V++T  G++DHEEA +KNVGG+V
Sbjct: 72  NGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKV 131

Query: 125 LGYFH 129
           LG+F+
Sbjct: 132 LGFFY 136


>AT5G59850.1 | Symbols:  | Ribosomal protein S8 family protein |
           chr5:24112499-24113084 REVERSE LENGTH=130
          Length = 130

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130


>AT1G07770.2 | Symbols: RPS15A | ribosomal protein S15A |
           chr1:2408413-2409065 REVERSE LENGTH=130
          Length = 130

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130


>AT1G07770.1 | Symbols: RPS15A | ribosomal protein S15A |
           chr1:2408413-2409065 REVERSE LENGTH=130
          Length = 130

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130


>AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D |
           chr3:16914891-16915529 FORWARD LENGTH=130
          Length = 130

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 90/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LND L+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+G++V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130