Miyakogusa Predicted Gene

Lj4g3v3017370.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3017370.2 Non Chatacterized Hit- tr|A2WM27|A2WM27_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,27.82,2e-18,Transposase_24,Transposase, Ptta/En/Spm, plant;
coiled-coil,NULL; seg,NULL,CUFF.52154.2
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...   132   4e-31
AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family)...   107   2e-23

>AT1G40087.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr1:14999762-15001868 REVERSE LENGTH=390
          Length = 390

 Score =  132 bits (332), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 166/350 (47%), Gaps = 32/350 (9%)

Query: 41  WTVQAIDEHGNQKTIQLTITDVFDMPKGQLIIVPFDR-QRRACGQAAALLSGACGRIVLD 99
           W ++ ID  GN +   +T  DV+ M +   +IV FD    +  G +  LL     ++  D
Sbjct: 36  WKIEVIDVDGNIEGKMMTSKDVWIM-QNHRVIVHFDEYTNQPIGDSGGLLGSWLSQLSND 94

Query: 100 PNNVPINFESWKEVVDPYKDDCFNTLKNLFHFQTLELFAKRYCLLIMGRKYRNGKLKLWN 159
              +PIN+  W+ V    KD  +  +++ F F    +  K Y +  +G K ++ KL+ W 
Sbjct: 95  IMLLPINYTDWRLVSPHIKDRAWAVIQSKFRFDD-PMMRKDYVMGALGSKCKDVKLRFWR 153

Query: 160 SKYDPSYSRGYL---IANVPDGVPKDQWSSFVDYHLKQEYQELCQRNSEARKKQTIPHTG 216
                 Y R  L   + N P+ VP+DQWS  V      +++++ +RN++ +K   +PH  
Sbjct: 154 E-----YKRNNLNETLQNRPEKVPEDQWSHLVHLIFTDKWRKMQERNTKNQKNHIMPHLC 208

Query: 217 GSKLLSRRQYEMEMELGREVSRGEMYIATHKKSNGSYVNEDARSVGVLVEQELSQTLDFS 276
           G K  SR++ E++++ G+   R E +I + KK +GS+V+++A+    L  + L+  L+ +
Sbjct: 209 GRKSFSRKRDEIKIKTGKTPCRAEFFIESRKKHDGSFVSDEAK----LRAEALTTLLNLN 264

Query: 277 -------EVSKNDALAKVLGPDHSGCVRGLGVGALHSVAFRSTTTQMKNSISSAESTQLN 329
                    S +D  ++V GP+  G VR +G G   S   R +    +  I ++E     
Sbjct: 265 PQVTYNGTASLDDEYSQVFGPERPGRVRCVGRGPTPSRLVRHSNATRRQDIENSEL---- 320

Query: 330 EELNSLKTKLAASDENIKTLQTVLFAYMQMKEGHIA----ANLAALFGNF 375
             +  LKT++    + +  + T L   +    G  A    AN A  F N 
Sbjct: 321 --VAQLKTQVKTLGDQVNAMSTFLGQILGNSTGEQASAWTANFATAFANI 368


>AT3G30200.1 | Symbols:  | Plant transposase (Ptta/En/Spm family) |
           chr3:11827752-11834262 REVERSE LENGTH=510
          Length = 510

 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 134/270 (49%), Gaps = 18/270 (6%)

Query: 103 VPINFESWKEVVDPYKDDCFNTLKNLFHFQTLELFAKRYCLLIMGRKYRNGKLKLWNSKY 162
           +PIN+  W+ V    KD  +  +++ F F    +  K Y +  +G + ++ KL+ W    
Sbjct: 218 LPINYTDWRLVSPHIKDRAWAVIQSKFRFDD-PMMRKDYVMGALGSRCKDVKLRFWRE-- 274

Query: 163 DPSYSRGYL---IANVPDGVPKDQWSSFVDYHLKQEYQELCQRNSEARKKQTIPHTGGSK 219
              + R  L   + N P+ VP+DQWS  V      +++++ +RN++ +K   +PH  G K
Sbjct: 275 ---HKRNNLNETLENRPEKVPEDQWSHLVHLRFTDKWRKMQERNTKNQKNHIMPHLCGRK 331

Query: 220 LLSRRQYEMEMELGREVSRGEMYIATHKKSNGSYVNEDA--RSVGVLVEQELSQTLDFS- 276
             SR++ E++++ G+   R E +I + KK +GS+V+++A  R++ +     L+  + ++ 
Sbjct: 332 SFSRKRDEIKIKTGKTPCRVEFFIESRKKHDGSFVSDEAKLRAIALTTLLNLNPQVTYNG 391

Query: 277 EVSKNDALAKVLGPDHSGCVRGLGVGALHSVAFRSTTTQMKNSISSAESTQLNEELNSLK 336
             S +D  ++V GP+  G V  +G G   S   R +    +  I ++E       +  LK
Sbjct: 392 TASLDDEYSQVFGPERPGRVHCVGRGPTPSRLVRHSNATRRKDIENSEL------VAQLK 445

Query: 337 TKLAASDENIKTLQTVLFAYMQMKEGHIAA 366
           T++    + +  + T L   +    G  A+
Sbjct: 446 TQVKTLGDQVNAMSTFLGQILGNSTGEQAS 475