Miyakogusa Predicted Gene

Lj4g3v3015100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3015100.1 Non Chatacterized Hit- tr|K4C0W4|K4C0W4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,34.82,7e-18,seg,NULL,CUFF.52107.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35320.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...    84   7e-17

>AT5G35320.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:13521893-13523144 FORWARD LENGTH=225
          Length = 225

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 100/220 (45%), Gaps = 23/220 (10%)

Query: 7   LKRKGVDEISHDFSDFSLSSPATKIRRLDSASLLPPIVEED--DQPPSFT---------- 54
           +KRK +D ++ DFSDFSLSSPA KIRRLD    LPPI+EE+  D P   T          
Sbjct: 9   MKRKDIDRVNDDFSDFSLSSPARKIRRLDVD--LPPIMEEEEIDLPMQDTVAEEIELEPV 66

Query: 55  NDERALVLFKXXXXXXXXXXXXTVDSELLSEIKNQQLPWWTREEERDLKSN--NHHLAIV 112
           NDERA+VLFK             VD  L+S  KN+ L   +  ++   +    N   A+V
Sbjct: 67  NDERAIVLFKPLHYHQPSSGNVFVDRHLISGFKNRFLRDVSIADDNQYEDERLNKCQAVV 126

Query: 113 PWVPQSSSFS----TLDEDNTNVELMEADDVMXXXXXXXXXXXXXXXXQDTAVGNAPSTS 168
            W P  S++S    T  +  T +E+ E D+                    T++       
Sbjct: 127 CWNPSQSTYSQSIGTFQQPRT-LEITELDETGEDVVMDDASNEIEEDTGSTSLSFPQQGQ 185

Query: 169 ITNFPTTMNLPEGFQQQQQHCFLPHLPQSNS--TPITWTR 206
                 T        QQ Q+C +P LPQ ++  TPITW R
Sbjct: 186 QQEQEHTYGFGLHPWQQAQNCMIPQLPQVSTTPTPITWFR 225