Miyakogusa Predicted Gene

Lj4g3v3014900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014900.1 Non Chatacterized Hit- tr|E1ZK35|E1ZK35_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,34.05,1e-17,PseudoU_synth_1,Pseudouridine synthase I, TruA,
alpha/beta domain; no description,Pseudouridine synt,CUFF.52095.1
         (390 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein ...   414   e-116
AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein ...   390   e-109
AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein ...    58   1e-08
AT3G06950.1 | Symbols:  | Pseudouridine synthase family protein ...    54   2e-07

>AT5G35400.1 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=420
          Length = 420

 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/368 (59%), Positives = 258/368 (70%), Gaps = 28/368 (7%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
           Y HY+H D C  ARWNARE++ FMY RPWQ V DFY NAV GNLS+  LF  +K   H++
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
             GI     +  +PE  S    GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66  --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P  IED
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 182

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
           AI   A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D     +S  + E F     
Sbjct: 183 AINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 242

Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
                + L + EI +    S  D+LE E  S           FSVSKV++LLQ L+GK+L
Sbjct: 243 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 302

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLPLADNDEETRVMCIELVANRFLRRMVR 377
           SYKMFARDTKA+RNEGPPTECF+YHARA E RL  +D  E  RVMC+ELVANRFLR+MVR
Sbjct: 303 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSDCVEGRRVMCVELVANRFLRKMVR 362

Query: 378 VLVATSIR 385
           VLVATSIR
Sbjct: 363 VLVATSIR 370


>AT5G35400.2 | Symbols:  | Pseudouridine synthase family protein |
           chr5:13599416-13602240 REVERSE LENGTH=471
          Length = 471

 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/419 (52%), Positives = 258/419 (61%), Gaps = 79/419 (18%)

Query: 43  YAHYNHTDPCKHARWNARESYEFMYARPWQRVNDFYLNAVLGNLSLPLLFGAEKIHDHNN 102
           Y HY+H D C  ARWNARE++ FMY RPWQ V DFY NAV GNLS+  LF  +K   H++
Sbjct: 6   YVHYHHADACSKARWNARETFRFMYDRPWQHVLDFYSNAVEGNLSVLSLFQPKKSLVHDD 65

Query: 103 EPGIPA---VSDKPEFESVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVI 159
             GI     +  +PE  S    GR GRW R+ FKIVLSY+G SFDGWQKQP L+TVQ V+
Sbjct: 66  --GITEEMLLESEPE-TSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLHTVQGVV 122

Query: 160 EGPLGTFVDENKTQQLKDRGLPIEGSVTVAGRTDKGVTALQQVCSFYTWKKDVKPRDIED 219
           E  LG FVDE K Q LK +  P+EG V VAGRTDKGV+AL QVCSFYTW+KD++P  IED
Sbjct: 123 EKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWRKDIEPIAIED 182

Query: 220 AIYHAAPGKLRVISVSEVSRAFHPNFSAKWRRYLYIFPLTDGGYKDQSSGSGEFF----- 274
           AI   A GKLRV+S+S+VSR+FHPNFSAKWRRYLYIFPL D     +S  + E F     
Sbjct: 183 AINKDASGKLRVVSISKVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDEN 242

Query: 275 -----DTLRNNEIHDS---SSKDDLENETKSYM---------FSVSKVNRLLQKLEGKLL 317
                + L + EI +    S  D+LE E  S           FSVSKV++LLQ L+GK+L
Sbjct: 243 KKKQRNGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQGKVL 302

Query: 318 SYKMFARDTKASRNEGPPTECFLYHARAIEARLP-------------------------- 351
           SYKMFARDTKA+RNEGPPTECF+YHARA E RL                           
Sbjct: 303 SYKMFARDTKAARNEGPPTECFMYHARAAEIRLSSSVVHFVAWVFGGSIVLVILATEGST 362

Query: 352 -------------------------LADNDEETRVMCIELVANRFLRRMVRVLVATSIR 385
                                     +D  E  RVMC+ELVANRFLR+MVRVLVATSIR
Sbjct: 363 LDLTDTKLYIASWFLIKRSCEFLFIASDCVEGRRVMCVELVANRFLRKMVRVLVATSIR 421


>AT1G20370.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:7051846-7053588 REVERSE LENGTH=549
          Length = 549

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 18/147 (12%)

Query: 117 SVASRGRGGRWARLTFKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPL---GTFVDENKTQ 173
           +VA R R  ++ R    IV ++ G  + G QK PG  T++  +E  L   G   D     
Sbjct: 46  NVAER-RAPKYRRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPD----- 99

Query: 174 QLKDRGLPIEGSVTVAGRTDKGVTALQQVCS--FYTWKKDVKPRDIEDAIYHAAPGKLRV 231
              DR  P       + RTDKGV+A+ QV S  FY     V P    + +    P ++RV
Sbjct: 100 --ADRNKPRNYEWARSARTDKGVSAVGQVVSGRFY-----VDPPGFVERLNSKLPDQIRV 152

Query: 232 ISVSEVSRAFHPNFSAKWRRYLYIFPL 258
                V+ +F        RRY+Y+ P+
Sbjct: 153 FGYKRVAPSFSSKKFCDRRRYVYLIPV 179


>AT3G06950.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:2192869-2194254 FORWARD LENGTH=323
          Length = 323

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 132 FKIVLSYHGGSFDGWQKQPGLNTVQSVIEGPLGTFVDENKTQQLKDRGLPIEGSVTVAGR 191
           +++V++Y G  F GWQ Q    T+QS++E  L       +  +L  + L + G    AGR
Sbjct: 43  WRLVIAYDGTRFAGWQYQESPPTIQSMLEKAL------IQITELGRKELQLIG----AGR 92

Query: 192 TDKGVTALQQVCSFYTWKKDVKPRDIEDAIYHAAPGKLRVISVSEVSRAFHPNFSAKWRR 251
           TD GV A  QV  F T            A+    P  +RV  +S     FH  FSA  + 
Sbjct: 93  TDAGVHAWGQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKV 152

Query: 252 YLY 254
           Y Y
Sbjct: 153 YRY 155