Miyakogusa Predicted Gene

Lj4g3v3014330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014330.1 tr|I4C326|I4C326_DESTA 30S ribosomal protein S6
OS=Desulfomonile tiedjei (strain ATCC 49306 / DSM
67,32.35,0.00000002,Ribosomal protein S6,Ribosomal protein S6;
Ribosomal_S6,Ribosomal protein S6, plastid/chloroplast; n,CUFF.52054.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64510.1 | Symbols:  | Translation elongation  factor EF1B/ri...   273   4e-74

>AT1G64510.1 | Symbols:  | Translation elongation  factor
           EF1B/ribosomal protein S6 family protein |
           chr1:23954993-23956205 REVERSE LENGTH=207
          Length = 207

 Score =  273 bits (699), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 134/179 (74%), Positives = 153/179 (85%), Gaps = 4/179 (2%)

Query: 35  RAFKPLFAESKSHC--YQKKNDSVFSVKAQTLDFTDSFFEGGLGSEDDLNS-SGTGL-TA 90
            + +P  ++SK  C   QK++ S F VK+Q LDF+ +FFEGG GS+DD  S SG+G+ TA
Sbjct: 28  HSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGGFGSDDDPTSPSGSGVSTA 87

Query: 91  TEEKEEPQCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPL 150
            E+K EPQCPPGLRQYETMAVLRPDMSEDERL LTQKYEELLVAGGGMYVEVFNRGVIPL
Sbjct: 88  LEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPL 147

Query: 151 AYSIKKKNKAGETNTYLDGIYLLYTYFTKPESIVALEETLLADDDVLRSTTFKIKKRKY 209
           AYSI+KKNKAGETNTYLDGIYLL+TYFTKPESIV LE  L ADDD++RS++FKIKKRKY
Sbjct: 148 AYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIKKRKY 206