Miyakogusa Predicted Gene
- Lj4g3v3014230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3014230.1 tr|B6U757|B6U757_MAIZE RNA polymerase II
transcriptional coactivator KELP OS=Zea mays PE=2
SV=1,60,3e-17,seg,NULL; RNA POLYMERASE II TRANSCRIPTIONAL
COACTIVATOR,NULL; ssDNA-binding transcriptional regulato,CUFF.52046.1
(160 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10920.2 | Symbols: KELP | transcriptional coactivator p15 (P... 172 7e-44
AT4G10920.1 | Symbols: KELP | transcriptional coactivator p15 (P... 172 7e-44
AT4G00980.1 | Symbols: | zinc knuckle (CCHC-type) family protei... 84 6e-17
AT5G09250.1 | Symbols: KIWI | ssDNA-binding transcriptional regu... 75 2e-14
AT5G09240.1 | Symbols: | ssDNA-binding transcriptional regulato... 57 6e-09
AT5G09250.2 | Symbols: KIWI | ssDNA-binding transcriptional regu... 53 1e-07
AT5G42060.1 | Symbols: | DEK, chromatin associated protein | ch... 52 2e-07
>AT4G10920.2 | Symbols: KELP | transcriptional coactivator p15 (PC4)
family protein (KELP) | chr4:6697894-6699103 REVERSE
LENGTH=165
Length = 165
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 113/156 (72%), Gaps = 13/156 (8%)
Query: 15 VRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFXXXXXXXXXXXXXX 74
V +IL ES+M E+TE K+RK AS +L +DLS KAFV+ VV+ F
Sbjct: 13 VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQV 72
Query: 75 X----------GGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGK 124
G G +KEFDDDGDLIIC+LS+KR+VTIQ+F+GK+LVSIREYY+KDGK
Sbjct: 73 NKEEEDGDKDCGKG---NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGK 129
Query: 125 DLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI 160
+LPTSKGISLT+EQWSTFKKN+PA+E A++KMESR+
Sbjct: 130 ELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
>AT4G10920.1 | Symbols: KELP | transcriptional coactivator p15 (PC4)
family protein (KELP) | chr4:6697894-6699103 REVERSE
LENGTH=165
Length = 165
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 90/156 (57%), Positives = 113/156 (72%), Gaps = 13/156 (8%)
Query: 15 VRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFXXXXXXXXXXXXXX 74
V +IL ES+M E+TE K+RK AS +L +DLS KAFV+ VV+ F
Sbjct: 13 VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQV 72
Query: 75 X----------GGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGK 124
G G +KEFDDDGDLIIC+LS+KR+VTIQ+F+GK+LVSIREYY+KDGK
Sbjct: 73 NKEEEDGDKDCGKG---NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGK 129
Query: 125 DLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI 160
+LPTSKGISLT+EQWSTFKKN+PA+E A++KMESR+
Sbjct: 130 ELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
>AT4G00980.1 | Symbols: | zinc knuckle (CCHC-type) family protein |
chr4:422732-424580 REVERSE LENGTH=488
Length = 488
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 29/165 (17%)
Query: 10 RIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFXXXX----- 64
+IEE V+ IL ES+MD++TE K+R AS +LG+DLS K V+ V++ F
Sbjct: 19 KIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLLSTPGEAL 78
Query: 65 ---------XXXXXXXXXXXGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSI 115
GG +D+ F ICKLSEK+ T+Q +RG+ +SI
Sbjct: 79 VPETVAPAKNETVSVAAASVGG---EDERF-------ICKLSEKQNATVQRYRGQPFLSI 128
Query: 116 REYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI 160
++ GK +G L+ QWS KKN A+E I++ +S++
Sbjct: 129 GS--QEHGKAF---RGAHLSTNQWSVIKKNFAAIEDGIKQCQSKL 168
>AT5G09250.1 | Symbols: KIWI | ssDNA-binding transcriptional
regulator | chr5:2875421-2876368 REVERSE LENGTH=107
Length = 107
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 50/71 (70%)
Query: 86 DDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKN 145
D D+++C +S+ R+V+++++ GK + IRE+Y KDGK LP KGISL+ +QW+T + +
Sbjct: 36 DQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNH 95
Query: 146 VPAVEKAIEKM 156
+EKA+ +
Sbjct: 96 AEDIEKALSDL 106
>AT5G09240.1 | Symbols: | ssDNA-binding transcriptional regulator |
chr5:2873893-2874780 REVERSE LENGTH=110
Length = 110
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 90 DLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTS--KGISLTEEQWSTFKKNVP 147
D+ IC L + R+V +++ G+ ++IR+++ KDG LP + +GISL+ EQW+ + +
Sbjct: 39 DIFICNLDKNRRVFVRNCNGRIWIAIRQFFVKDGITLPCNSKQGISLSLEQWNDLRNHEE 98
Query: 148 AVEKAIEKM 156
++KA+ ++
Sbjct: 99 DIDKALSEL 107
>AT5G09250.2 | Symbols: KIWI | ssDNA-binding transcriptional
regulator | chr5:2875959-2876368 REVERSE LENGTH=85
Length = 85
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 86 DDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKG 131
D D+++C +S+ R+V+++++ GK + IRE+Y KDGK LP KG
Sbjct: 36 DQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKG 81
>AT5G42060.1 | Symbols: | DEK, chromatin associated protein |
chr5:16818644-16818922 REVERSE LENGTH=92
Length = 92
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 43/60 (71%)
Query: 1 MENDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAF 60
+E D + + +I++ V+KILE SN+ ++TE K R++AS +L LDLS P+K VK+ V+ F
Sbjct: 9 VEIDKDLRRKIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENF 68