Miyakogusa Predicted Gene

Lj4g3v3014220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014220.1 Non Chatacterized Hit- tr|E1Z1V9|E1Z1V9_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,57.75,0.000000000000003,seg,NULL,CUFF.52045.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42070.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   127   2e-30

>AT5G42070.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 13 growth stages; Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:16819118-16820119
           REVERSE LENGTH=164
          Length = 164

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query: 72  SGCKACGREEIERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPEFLASGGRYRRQGQSMD 131
           SGC+ACG+EE E GCNG+GRIQGGIATVPGFGWWPIKAYRPCP F+ +GGRYRR GQSMD
Sbjct: 69  SGCRACGKEEKESGCNGDGRIQGGIATVPGFGWWPIKAYRPCPAFVEAGGRYRRIGQSMD 128

Query: 132 EVAFGRG 138
           EVAFGRG
Sbjct: 129 EVAFGRG 135