Miyakogusa Predicted Gene

Lj4g3v3014210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014210.1 Non Chatacterized Hit- tr|B7FK32|B7FK32_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,35.04,0.0000000000002,no description,NULL; NTF2-like,NULL;
F-box domain,F-box domain, cyclin-like; seg,NULL;
SnoaL_3,NULL;,CUFF.52042.1
         (284 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10925.3 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   355   1e-98
AT4G10925.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   355   1e-98
AT4G10925.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...   355   1e-98
AT4G23960.1 | Symbols:  | F-box family protein | chr4:12444765-1...   156   2e-38
AT3G09250.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    73   2e-13
AT3G09250.2 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    64   1e-10

>AT4G10925.3 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr4:6702987-6704283 REVERSE LENGTH=231
          Length = 231

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 161/219 (73%), Positives = 184/219 (84%)

Query: 60  AVPYLNGGSAEMLEASHAPVAPVVLAERRTGSSMMEELVPEITTHALSYLDYPSLCRLSM 119
           + P  NGG+  M       V    +A+ + G SMME+LVPEITTHALSYLDYPSLCRLSM
Sbjct: 3   STPLANGGTPPMGGGERTTVTTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSM 62

Query: 120 TNSLMRKAANDDNAWKALYHKDFTWEQDSITPVNGWKAYYAATRAIVNINTEFFNIIRDK 179
           TNSLMRKAANDDNAWKALYHKDFT EQD ITPVNGWK YYA TRAI+++NTEFF IIRD+
Sbjct: 63  TNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDR 122

Query: 180 SIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRDVRARVLTDM 239
           ++ AM+R WLN+DYVKCIHASGELFSGYN V+QSWQL FNWEQG +FQV  VR R+LTDM
Sbjct: 123 ALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDM 182

Query: 240 AWVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVM 278
           AWVTMK ++++D GPF +TNVFEFHNGRW+MVHHHSSVM
Sbjct: 183 AWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVM 221


>AT4G10925.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr4:6702987-6704283 REVERSE LENGTH=231
          Length = 231

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 161/219 (73%), Positives = 184/219 (84%)

Query: 60  AVPYLNGGSAEMLEASHAPVAPVVLAERRTGSSMMEELVPEITTHALSYLDYPSLCRLSM 119
           + P  NGG+  M       V    +A+ + G SMME+LVPEITTHALSYLDYPSLCRLSM
Sbjct: 3   STPLANGGTPPMGGGERTTVTTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSM 62

Query: 120 TNSLMRKAANDDNAWKALYHKDFTWEQDSITPVNGWKAYYAATRAIVNINTEFFNIIRDK 179
           TNSLMRKAANDDNAWKALYHKDFT EQD ITPVNGWK YYA TRAI+++NTEFF IIRD+
Sbjct: 63  TNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDR 122

Query: 180 SIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRDVRARVLTDM 239
           ++ AM+R WLN+DYVKCIHASGELFSGYN V+QSWQL FNWEQG +FQV  VR R+LTDM
Sbjct: 123 ALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDM 182

Query: 240 AWVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVM 278
           AWVTMK ++++D GPF +TNVFEFHNGRW+MVHHHSSVM
Sbjct: 183 AWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVM 221


>AT4G10925.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr4:6702987-6704283 REVERSE LENGTH=231
          Length = 231

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 161/219 (73%), Positives = 184/219 (84%)

Query: 60  AVPYLNGGSAEMLEASHAPVAPVVLAERRTGSSMMEELVPEITTHALSYLDYPSLCRLSM 119
           + P  NGG+  M       V    +A+ + G SMME+LVPEITTHALSYLDYPSLCRLSM
Sbjct: 3   STPLANGGTPPMGGGERTTVTTSTVADDKPGVSMMEQLVPEITTHALSYLDYPSLCRLSM 62

Query: 120 TNSLMRKAANDDNAWKALYHKDFTWEQDSITPVNGWKAYYAATRAIVNINTEFFNIIRDK 179
           TNSLMRKAANDDNAWKALYHKDFT EQD ITPVNGWK YYA TRAI+++NTEFF IIRD+
Sbjct: 63  TNSLMRKAANDDNAWKALYHKDFTLEQDGITPVNGWKEYYATTRAIISVNTEFFTIIRDR 122

Query: 180 SIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRDVRARVLTDM 239
           ++ AM+R WLN+DYVKCIHASGELFSGYN V+QSWQL FNWEQG +FQV  VR R+LTDM
Sbjct: 123 ALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHTVRTRILTDM 182

Query: 240 AWVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVM 278
           AWVTMK ++++D GPF +TNVFEFHNGRW+MVHHHSSVM
Sbjct: 183 AWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVM 221


>AT4G23960.1 | Symbols:  | F-box family protein |
           chr4:12444765-12445323 FORWARD LENGTH=122
          Length = 122

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 91/115 (79%)

Query: 93  MMEELVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTWEQDSITPV 152
           M+E+L PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +  TPV
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 153 NGWKAYYAATRAIVNINTEFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGY 207
           NGWKA++A T+ ++ +N +FF+I+  +S+P M+  WLN+DYVKC + SGELF+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115


>AT3G09250.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr3:2839080-2840294 FORWARD LENGTH=244
          Length = 244

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 5/118 (4%)

Query: 164 AIVNINTEFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLV-FNWEQ 222
           ++++ N+ F+   R+  + AM   W  +    C+H   +  +GY+ VM+SW+LV  N+E 
Sbjct: 123 SVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEF 182

Query: 223 GLNFQVRDVRARVLTDMAWVTMKTFVDMDT----GPFNVTNVFEFHNGRWYMVHHHSS 276
            L  +++DV   V  ++ +VT   FV        G   V+NVFE  +G+W++  HH+S
Sbjct: 183 PLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWFICIHHAS 240


>AT3G09250.2 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr3:2839488-2840585 FORWARD LENGTH=246
          Length = 246

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 164 AIVNINTEFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLV-FNWEQ 222
           ++++ N+ F+   R+  + AM   W  +    C+H   +  +GY+ VM+SW+LV  N+E 
Sbjct: 109 SVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEF 168

Query: 223 GLNFQVRDVRARVLTDMAWVTMKTFVDMDT----GPFNVTNVFEFHNGRW 268
            L  +++DV   V  ++ +VT   FV        G   V+NVFE  +G+W
Sbjct: 169 PLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQW 218